Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24845 and RR42_RS24850 overlap by 1 nucleotides RR42_RS24850 and RR42_RS24855 are separated by 32 nucleotides
RR42_RS24845: RR42_RS24845 - iditol 2-dehydrogenase, at 911,968 to 913,023
_RS24845
RR42_RS24850: RR42_RS24850 - alpha/beta hydrolase, at 913,023 to 913,943
_RS24850
RR42_RS24855: RR42_RS24855 - MFS transporter, at 913,976 to 915,304
_RS24855
Position (kb) 913
914
915
916 Strain fitness (log2 ratio) -2
-1
0
1
2 at 913.091 kb on - strand at 913.100 kb on - strand at 913.355 kb on - strand, within RR42_RS24850 at 913.525 kb on + strand, within RR42_RS24850 at 913.526 kb on - strand, within RR42_RS24850 at 913.526 kb on - strand, within RR42_RS24850 at 913.692 kb on + strand, within RR42_RS24850 at 913.712 kb on - strand, within RR42_RS24850 at 913.858 kb on + strand at 913.993 kb on - strand at 914.085 kb on + strand at 914.231 kb on + strand, within RR42_RS24855 at 914.232 kb on + strand, within RR42_RS24855 at 914.233 kb on - strand, within RR42_RS24855 at 914.459 kb on + strand, within RR42_RS24855 at 914.646 kb on - strand, within RR42_RS24855 at 914.646 kb on - strand, within RR42_RS24855 at 914.749 kb on - strand, within RR42_RS24855 at 914.914 kb on - strand, within RR42_RS24855 at 915.211 kb on - strand at 915.269 kb on + strand at 915.270 kb on - strand at 915.270 kb on - strand at 915.390 kb on + strand at 915.390 kb on + strand at 915.391 kb on - strand at 915.522 kb on - strand at 915.642 kb on + strand at 915.643 kb on + strand at 915.644 kb on - strand at 915.648 kb on - strand at 915.736 kb on - strand at 915.736 kb on - strand at 915.776 kb on - strand at 916.143 kb on - strand at 916.212 kb on + strand at 916.212 kb on + strand at 916.212 kb on + strand at 916.212 kb on + strand at 916.213 kb on - strand at 916.213 kb on - strand at 916.213 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 913,091 - -1.2 913,100 - -0.8 913,355 - RR42_RS24850 0.36 +0.5 913,525 + RR42_RS24850 0.55 -0.1 913,526 - RR42_RS24850 0.55 +0.0 913,526 - RR42_RS24850 0.55 -0.1 913,692 + RR42_RS24850 0.73 -2.0 913,712 - RR42_RS24850 0.75 -1.2 913,858 + -0.8 913,993 - +0.8 914,085 + -1.4 914,231 + RR42_RS24855 0.19 +0.1 914,232 + RR42_RS24855 0.19 +0.5 914,233 - RR42_RS24855 0.19 -1.4 914,459 + RR42_RS24855 0.36 -1.2 914,646 - RR42_RS24855 0.50 -0.7 914,646 - RR42_RS24855 0.50 -0.3 914,749 - RR42_RS24855 0.58 +0.0 914,914 - RR42_RS24855 0.71 -0.3 915,211 - +0.2 915,269 + -2.0 915,270 - +0.2 915,270 - -1.0 915,390 + +0.1 915,390 + +0.6 915,391 - +0.0 915,522 - -0.9 915,642 + -0.2 915,643 + -0.0 915,644 - -0.3 915,648 - +0.5 915,736 - +2.4 915,736 - -0.4 915,776 - +0.5 916,143 - -0.8 916,212 + +0.8 916,212 + +0.3 916,212 + +0.2 916,212 + -0.1 916,213 - -1.3 916,213 - -0.4 916,213 - -0.5
Or see this region's nucleotide sequence