Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21690

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS21685 and RR42_RS21690 are separated by 49 nucleotidesRR42_RS21690 and RR42_RS21695 are separated by 14 nucleotides RR42_RS21685: RR42_RS21685 - hypothetical protein, at 192,839 to 193,855 _RS21685 RR42_RS21690: RR42_RS21690 - acetyltransferase, at 193,905 to 194,432 _RS21690 RR42_RS21695: RR42_RS21695 - DNA-binding protein, at 194,447 to 195,034 _RS21695 Position (kb) 193 194 195Strain fitness (log2 ratio) -2 -1 0 1 2at 192.980 kb on - strand, within RR42_RS21685at 192.980 kb on - strand, within RR42_RS21685at 193.022 kb on + strand, within RR42_RS21685at 193.263 kb on - strand, within RR42_RS21685at 193.442 kb on + strand, within RR42_RS21685at 193.918 kb on + strandat 194.005 kb on + strand, within RR42_RS21690at 194.421 kb on - strandat 194.500 kb on - strandat 194.530 kb on - strand, within RR42_RS21695at 194.607 kb on + strand, within RR42_RS21695at 194.754 kb on + strand, within RR42_RS21695at 194.754 kb on + strand, within RR42_RS21695at 194.755 kb on - strand, within RR42_RS21695at 195.291 kb on + strandat 195.291 kb on + strandat 195.291 kb on + strandat 195.292 kb on - strandat 195.292 kb on - strandat 195.293 kb on + strandat 195.293 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
192,980 - RR42_RS21685 0.14 -0.1
192,980 - RR42_RS21685 0.14 -0.4
193,022 + RR42_RS21685 0.18 +0.2
193,263 - RR42_RS21685 0.42 +0.4
193,442 + RR42_RS21685 0.59 +0.3
193,918 + -0.5
194,005 + RR42_RS21690 0.19 -1.2
194,421 - -0.1
194,500 - +0.1
194,530 - RR42_RS21695 0.14 -0.1
194,607 + RR42_RS21695 0.27 +0.9
194,754 + RR42_RS21695 0.52 +1.6
194,754 + RR42_RS21695 0.52 -1.8
194,755 - RR42_RS21695 0.52 +0.5
195,291 + -0.7
195,291 + -0.5
195,291 + +2.3
195,292 - -0.4
195,292 - +0.4
195,293 + +0.2
195,293 + +0.0

Or see this region's nucleotide sequence