Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21350 and RR42_RS21355 are separated by 79 nucleotides RR42_RS21355 and RR42_RS21360 overlap by 4 nucleotides RR42_RS21360 and RR42_RS21365 are separated by 19 nucleotides
RR42_RS21350: RR42_RS21350 - peptide ABC transporter substrate-binding protein, at 118,746 to 120,308
_RS21350
RR42_RS21355: RR42_RS21355 - ABC transporter permease, at 120,388 to 121,392
_RS21355
RR42_RS21360: RR42_RS21360 - ABC transporter permease, at 121,389 to 122,228
_RS21360
RR42_RS21365: RR42_RS21365 - ABC transporter ATP-binding protein, at 122,248 to 123,885
_RS21365
Position (kb) 120
121
122 Strain fitness (log2 ratio) -1
0
1
2 at 119.413 kb on - strand, within RR42_RS21350 at 119.413 kb on - strand, within RR42_RS21350 at 119.811 kb on + strand, within RR42_RS21350 at 119.839 kb on - strand, within RR42_RS21350 at 119.869 kb on - strand, within RR42_RS21350 at 119.979 kb on + strand, within RR42_RS21350 at 119.980 kb on - strand, within RR42_RS21350 at 119.985 kb on + strand, within RR42_RS21350 at 119.986 kb on - strand, within RR42_RS21350 at 120.025 kb on - strand, within RR42_RS21350 at 120.025 kb on - strand, within RR42_RS21350 at 120.150 kb on + strand, within RR42_RS21350 at 120.151 kb on - strand, within RR42_RS21350 at 120.311 kb on - strand at 120.311 kb on - strand at 120.326 kb on + strand at 120.327 kb on - strand at 120.640 kb on + strand, within RR42_RS21355 at 120.830 kb on - strand, within RR42_RS21355 at 121.016 kb on - strand, within RR42_RS21355 at 121.016 kb on - strand, within RR42_RS21355 at 121.150 kb on - strand, within RR42_RS21355 at 121.411 kb on - strand at 121.803 kb on + strand, within RR42_RS21360 at 121.804 kb on - strand, within RR42_RS21360 at 122.268 kb on - strand at 122.348 kb on - strand at 122.348 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 119,413 - RR42_RS21350 0.43 +0.0 119,413 - RR42_RS21350 0.43 +0.2 119,811 + RR42_RS21350 0.68 -0.3 119,839 - RR42_RS21350 0.70 +0.5 119,869 - RR42_RS21350 0.72 -0.1 119,979 + RR42_RS21350 0.79 +0.5 119,980 - RR42_RS21350 0.79 -0.6 119,985 + RR42_RS21350 0.79 -0.1 119,986 - RR42_RS21350 0.79 -0.5 120,025 - RR42_RS21350 0.82 +0.3 120,025 - RR42_RS21350 0.82 +0.5 120,150 + RR42_RS21350 0.90 +0.7 120,151 - RR42_RS21350 0.90 +0.1 120,311 - +0.3 120,311 - +0.8 120,326 + +0.2 120,327 - -1.0 120,640 + RR42_RS21355 0.25 -1.2 120,830 - RR42_RS21355 0.44 +2.2 121,016 - RR42_RS21355 0.62 +0.3 121,016 - RR42_RS21355 0.62 +0.3 121,150 - RR42_RS21355 0.76 +0.3 121,411 - -0.8 121,803 + RR42_RS21360 0.49 -0.8 121,804 - RR42_RS21360 0.49 -0.3 122,268 - -0.9 122,348 - +0.8 122,348 - +0.6
Or see this region's nucleotide sequence