Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08990

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08985 and RR42_RS08990 are separated by 188 nucleotidesRR42_RS08990 and RR42_RS08995 are separated by 240 nucleotides RR42_RS08985: RR42_RS08985 - diguanylate cyclase, at 1,886,417 to 1,888,045 _RS08985 RR42_RS08990: RR42_RS08990 - DNA polymerase, at 1,888,234 to 1,889,397 _RS08990 RR42_RS08995: RR42_RS08995 - hypothetical protein, at 1,889,638 to 1,890,129 _RS08995 Position (kb) 1888 1889 1890Strain fitness (log2 ratio) -2 -1 0 1at 1887.258 kb on - strand, within RR42_RS08985at 1887.424 kb on + strand, within RR42_RS08985at 1887.424 kb on + strand, within RR42_RS08985at 1887.425 kb on - strand, within RR42_RS08985at 1887.425 kb on - strand, within RR42_RS08985at 1887.425 kb on - strand, within RR42_RS08985at 1887.426 kb on + strand, within RR42_RS08985at 1887.426 kb on + strand, within RR42_RS08985at 1887.497 kb on + strand, within RR42_RS08985at 1887.497 kb on + strand, within RR42_RS08985at 1887.497 kb on + strand, within RR42_RS08985at 1887.497 kb on + strand, within RR42_RS08985at 1887.497 kb on + strand, within RR42_RS08985at 1887.497 kb on + strand, within RR42_RS08985at 1887.498 kb on - strand, within RR42_RS08985at 1887.498 kb on - strand, within RR42_RS08985at 1887.498 kb on - strand, within RR42_RS08985at 1887.498 kb on - strand, within RR42_RS08985at 1887.498 kb on - strand, within RR42_RS08985at 1887.514 kb on - strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.544 kb on - strand, within RR42_RS08985at 1887.544 kb on - strand, within RR42_RS08985at 1887.544 kb on - strand, within RR42_RS08985at 1887.544 kb on - strand, within RR42_RS08985at 1887.544 kb on - strand, within RR42_RS08985at 1887.547 kb on + strand, within RR42_RS08985at 1887.547 kb on + strand, within RR42_RS08985at 1887.548 kb on - strand, within RR42_RS08985at 1887.548 kb on - strand, within RR42_RS08985at 1887.548 kb on - strand, within RR42_RS08985at 1887.548 kb on - strand, within RR42_RS08985at 1887.548 kb on - strand, within RR42_RS08985at 1887.548 kb on - strand, within RR42_RS08985at 1887.612 kb on + strand, within RR42_RS08985at 1887.613 kb on - strand, within RR42_RS08985at 1887.613 kb on - strand, within RR42_RS08985at 1887.613 kb on - strand, within RR42_RS08985at 1887.961 kb on + strandat 1887.961 kb on + strandat 1887.961 kb on + strandat 1887.961 kb on + strandat 1887.962 kb on - strandat 1887.962 kb on - strandat 1888.031 kb on + strandat 1888.031 kb on + strandat 1888.049 kb on + strandat 1888.057 kb on + strandat 1888.057 kb on + strandat 1888.057 kb on + strandat 1888.057 kb on + strandat 1888.058 kb on - strandat 1888.058 kb on - strandat 1888.058 kb on - strandat 1888.082 kb on - strandat 1888.096 kb on + strandat 1888.183 kb on - strandat 1888.201 kb on - strandat 1888.201 kb on - strandat 1888.203 kb on + strandat 1888.203 kb on + strandat 1888.203 kb on + strandat 1888.203 kb on + strandat 1888.204 kb on - strandat 1888.204 kb on - strandat 1888.204 kb on - strandat 1888.235 kb on + strandat 1888.454 kb on + strand, within RR42_RS08990at 1888.487 kb on + strand, within RR42_RS08990at 1888.487 kb on + strand, within RR42_RS08990at 1888.679 kb on + strand, within RR42_RS08990at 1888.798 kb on - strand, within RR42_RS08990at 1888.798 kb on - strand, within RR42_RS08990at 1888.798 kb on - strand, within RR42_RS08990at 1889.009 kb on + strand, within RR42_RS08990at 1889.010 kb on - strand, within RR42_RS08990at 1889.081 kb on + strand, within RR42_RS08990at 1889.082 kb on - strand, within RR42_RS08990at 1889.082 kb on - strand, within RR42_RS08990at 1889.189 kb on + strand, within RR42_RS08990at 1889.190 kb on - strand, within RR42_RS08990at 1889.222 kb on + strand, within RR42_RS08990at 1889.223 kb on - strand, within RR42_RS08990at 1889.263 kb on + strand, within RR42_RS08990at 1889.263 kb on + strand, within RR42_RS08990at 1889.264 kb on - strand, within RR42_RS08990at 1889.348 kb on + strandat 1889.348 kb on + strandat 1889.419 kb on - strandat 1889.426 kb on + strandat 1889.452 kb on + strandat 1889.475 kb on - strandat 1889.489 kb on + strandat 1889.489 kb on + strandat 1889.489 kb on + strandat 1889.489 kb on + strandat 1889.490 kb on - strandat 1889.490 kb on - strandat 1889.490 kb on - strandat 1889.490 kb on - strandat 1889.569 kb on + strandat 1889.801 kb on + strand, within RR42_RS08995at 1889.801 kb on + strand, within RR42_RS08995at 1889.802 kb on - strand, within RR42_RS08995at 1889.802 kb on - strand, within RR42_RS08995at 1889.884 kb on + strand, within RR42_RS08995at 1890.130 kb on - strandat 1890.171 kb on + strandat 1890.171 kb on + strandat 1890.172 kb on - strandat 1890.232 kb on + strandat 1890.232 kb on + strandat 1890.233 kb on - strandat 1890.233 kb on - strandat 1890.259 kb on - strandat 1890.259 kb on - strandat 1890.269 kb on + strandat 1890.269 kb on + strandat 1890.269 kb on + strandat 1890.269 kb on + strandat 1890.269 kb on + strandat 1890.269 kb on + strandat 1890.269 kb on + strandat 1890.270 kb on - strandat 1890.270 kb on - strandat 1890.270 kb on - strandat 1890.291 kb on + strandat 1890.291 kb on + strandat 1890.291 kb on + strandat 1890.292 kb on - strandat 1890.292 kb on - strandat 1890.292 kb on - strandat 1890.292 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,887,258 - RR42_RS08985 0.52 -0.7
1,887,424 + RR42_RS08985 0.62 -0.2
1,887,424 + RR42_RS08985 0.62 -0.3
1,887,425 - RR42_RS08985 0.62 -1.5
1,887,425 - RR42_RS08985 0.62 -0.7
1,887,425 - RR42_RS08985 0.62 +0.7
1,887,426 + RR42_RS08985 0.62 +0.5
1,887,426 + RR42_RS08985 0.62 +0.2
1,887,497 + RR42_RS08985 0.66 -0.8
1,887,497 + RR42_RS08985 0.66 -0.3
1,887,497 + RR42_RS08985 0.66 +0.5
1,887,497 + RR42_RS08985 0.66 +0.1
1,887,497 + RR42_RS08985 0.66 -0.6
1,887,497 + RR42_RS08985 0.66 -0.5
1,887,498 - RR42_RS08985 0.66 +0.4
1,887,498 - RR42_RS08985 0.66 -0.3
1,887,498 - RR42_RS08985 0.66 -0.0
1,887,498 - RR42_RS08985 0.66 +0.6
1,887,498 - RR42_RS08985 0.66 -0.2
1,887,514 - RR42_RS08985 0.67 -0.3
1,887,543 + RR42_RS08985 0.69 +0.6
1,887,543 + RR42_RS08985 0.69 -0.2
1,887,543 + RR42_RS08985 0.69 +0.1
1,887,543 + RR42_RS08985 0.69 -0.3
1,887,543 + RR42_RS08985 0.69 -0.7
1,887,543 + RR42_RS08985 0.69 -2.1
1,887,543 + RR42_RS08985 0.69 +0.6
1,887,543 + RR42_RS08985 0.69 +0.2
1,887,543 + RR42_RS08985 0.69 -1.5
1,887,544 - RR42_RS08985 0.69 -0.3
1,887,544 - RR42_RS08985 0.69 -0.1
1,887,544 - RR42_RS08985 0.69 -0.5
1,887,544 - RR42_RS08985 0.69 -0.4
1,887,544 - RR42_RS08985 0.69 +0.8
1,887,547 + RR42_RS08985 0.69 +1.6
1,887,547 + RR42_RS08985 0.69 -0.4
1,887,548 - RR42_RS08985 0.69 +0.8
1,887,548 - RR42_RS08985 0.69 -0.4
1,887,548 - RR42_RS08985 0.69 -0.6
1,887,548 - RR42_RS08985 0.69 +0.1
1,887,548 - RR42_RS08985 0.69 -0.5
1,887,548 - RR42_RS08985 0.69 +0.4
1,887,612 + RR42_RS08985 0.73 -0.2
1,887,613 - RR42_RS08985 0.73 +0.3
1,887,613 - RR42_RS08985 0.73 +1.1
1,887,613 - RR42_RS08985 0.73 +0.4
1,887,961 + -0.0
1,887,961 + -0.7
1,887,961 + -0.9
1,887,961 + -1.0
1,887,962 - -0.5
1,887,962 - +0.0
1,888,031 + -0.1
1,888,031 + -0.2
1,888,049 + -0.1
1,888,057 + -0.2
1,888,057 + +1.0
1,888,057 + -0.2
1,888,057 + +1.0
1,888,058 - -0.4
1,888,058 - +0.8
1,888,058 - -0.5
1,888,082 - -1.5
1,888,096 + -0.1
1,888,183 - -0.4
1,888,201 - +0.7
1,888,201 - +0.0
1,888,203 + +0.2
1,888,203 + +0.4
1,888,203 + -0.1
1,888,203 + +0.1
1,888,204 - -0.6
1,888,204 - +0.1
1,888,204 - -0.5
1,888,235 + +0.5
1,888,454 + RR42_RS08990 0.19 +0.5
1,888,487 + RR42_RS08990 0.22 -1.0
1,888,487 + RR42_RS08990 0.22 +1.4
1,888,679 + RR42_RS08990 0.38 +0.3
1,888,798 - RR42_RS08990 0.48 +0.4
1,888,798 - RR42_RS08990 0.48 -0.8
1,888,798 - RR42_RS08990 0.48 -0.1
1,889,009 + RR42_RS08990 0.67 +0.1
1,889,010 - RR42_RS08990 0.67 -0.8
1,889,081 + RR42_RS08990 0.73 +0.9
1,889,082 - RR42_RS08990 0.73 -0.3
1,889,082 - RR42_RS08990 0.73 +0.0
1,889,189 + RR42_RS08990 0.82 -0.2
1,889,190 - RR42_RS08990 0.82 -0.9
1,889,222 + RR42_RS08990 0.85 -0.0
1,889,223 - RR42_RS08990 0.85 -0.9
1,889,263 + RR42_RS08990 0.88 +1.6
1,889,263 + RR42_RS08990 0.88 +0.4
1,889,264 - RR42_RS08990 0.88 +0.3
1,889,348 + +0.4
1,889,348 + +0.2
1,889,419 - -0.2
1,889,426 + +0.9
1,889,452 + +0.3
1,889,475 - -0.2
1,889,489 + +0.2
1,889,489 + -0.2
1,889,489 + -0.8
1,889,489 + +0.5
1,889,490 - -0.2
1,889,490 - -1.3
1,889,490 - +0.1
1,889,490 - -0.0
1,889,569 + +0.9
1,889,801 + RR42_RS08995 0.33 -1.3
1,889,801 + RR42_RS08995 0.33 -1.1
1,889,802 - RR42_RS08995 0.33 +0.6
1,889,802 - RR42_RS08995 0.33 -1.4
1,889,884 + RR42_RS08995 0.50 -0.5
1,890,130 - -2.7
1,890,171 + +0.8
1,890,171 + -0.3
1,890,172 - -1.4
1,890,232 + +0.6
1,890,232 + -0.2
1,890,233 - -0.2
1,890,233 - -0.1
1,890,259 - +1.1
1,890,259 - +0.4
1,890,269 + -1.2
1,890,269 + -1.1
1,890,269 + +0.5
1,890,269 + -0.3
1,890,269 + -0.8
1,890,269 + -1.2
1,890,269 + -0.5
1,890,270 - -0.2
1,890,270 - -0.0
1,890,270 - -0.3
1,890,291 + -1.7
1,890,291 + +0.2
1,890,291 + +0.1
1,890,292 - +0.2
1,890,292 - +0.2
1,890,292 - -0.9
1,890,292 - -0.0

Or see this region's nucleotide sequence