Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04375 and RR42_RS04380 are separated by 85 nucleotides
RR42_RS04375: RR42_RS04375 - magnesium transporter, at 973,188 to 974,501
_RS04375
RR42_RS04380: RR42_RS04380 - LysR family transcriptional regulator, at 974,587 to 975,540
_RS04380
Position (kb) 973
974
975 Strain fitness (log2 ratio) -2
-1
0
1
2 at 972.365 kb on - strand at 972.719 kb on + strand at 972.803 kb on + strand at 972.803 kb on + strand at 972.863 kb on + strand at 972.863 kb on + strand at 972.864 kb on - strand at 972.864 kb on - strand at 972.909 kb on + strand at 972.971 kb on + strand at 972.972 kb on - strand at 973.052 kb on + strand at 973.358 kb on - strand, within RR42_RS04375 at 973.477 kb on + strand, within RR42_RS04375 at 973.477 kb on + strand, within RR42_RS04375 at 973.477 kb on + strand, within RR42_RS04375 at 973.503 kb on + strand, within RR42_RS04375 at 973.732 kb on + strand, within RR42_RS04375 at 974.086 kb on - strand, within RR42_RS04375 at 974.086 kb on - strand, within RR42_RS04375 at 974.288 kb on + strand, within RR42_RS04375 at 974.501 kb on + strand at 974.501 kb on + strand at 974.501 kb on + strand at 974.501 kb on + strand at 974.502 kb on - strand at 974.502 kb on - strand at 974.502 kb on - strand at 974.554 kb on + strand at 974.554 kb on + strand at 974.593 kb on - strand at 974.861 kb on + strand, within RR42_RS04380 at 974.862 kb on - strand, within RR42_RS04380 at 974.862 kb on - strand, within RR42_RS04380 at 975.169 kb on + strand, within RR42_RS04380 at 975.169 kb on + strand, within RR42_RS04380 at 975.326 kb on + strand, within RR42_RS04380 at 975.347 kb on + strand, within RR42_RS04380
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 972,365 - -0.2 972,719 + +1.1 972,803 + -0.6 972,803 + -1.6 972,863 + -0.2 972,863 + +0.2 972,864 - -0.3 972,864 - -0.6 972,909 + +0.3 972,971 + +0.5 972,972 - +0.9 973,052 + +0.8 973,358 - RR42_RS04375 0.13 -0.4 973,477 + RR42_RS04375 0.22 +0.3 973,477 + RR42_RS04375 0.22 -0.6 973,477 + RR42_RS04375 0.22 -0.3 973,503 + RR42_RS04375 0.24 +0.7 973,732 + RR42_RS04375 0.41 +0.1 974,086 - RR42_RS04375 0.68 +1.3 974,086 - RR42_RS04375 0.68 -0.3 974,288 + RR42_RS04375 0.84 -0.5 974,501 + -0.3 974,501 + +2.7 974,501 + +0.0 974,501 + +0.2 974,502 - +1.1 974,502 - -0.0 974,502 - +0.0 974,554 + -0.9 974,554 + -2.1 974,593 - -1.4 974,861 + RR42_RS04380 0.29 +1.3 974,862 - RR42_RS04380 0.29 +0.6 974,862 - RR42_RS04380 0.29 +0.8 975,169 + RR42_RS04380 0.61 -0.4 975,169 + RR42_RS04380 0.61 +0.5 975,326 + RR42_RS04380 0.77 -0.1 975,347 + RR42_RS04380 0.80 +0.6
Or see this region's nucleotide sequence