Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01965

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS01960 and RR42_RS01965 are separated by 208 nucleotidesRR42_RS01965 and RR42_RS01970 are separated by 7 nucleotidesRR42_RS01970 and RR42_RS01975 are separated by 89 nucleotides RR42_RS01960: RR42_RS01960 - transcriptional regulator, at 439,408 to 440,061 _RS01960 RR42_RS01965: RR42_RS01965 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 440,270 to 440,971 _RS01965 RR42_RS01970: RR42_RS01970 - maleylacetoacetate isomerase, at 440,979 to 441,623 _RS01970 RR42_RS01975: RR42_RS01975 - cell division protein FtsY, at 441,713 to 442,858 _RS01975 Position (kb) 440 441Strain fitness (log2 ratio) -2 -1 0 1 2 3at 439.409 kb on + strandat 439.409 kb on + strandat 439.410 kb on - strandat 439.490 kb on + strand, within RR42_RS01960at 439.490 kb on + strand, within RR42_RS01960at 439.490 kb on + strand, within RR42_RS01960at 439.490 kb on + strand, within RR42_RS01960at 439.490 kb on + strand, within RR42_RS01960at 439.491 kb on - strand, within RR42_RS01960at 439.491 kb on - strand, within RR42_RS01960at 439.625 kb on + strand, within RR42_RS01960at 439.679 kb on + strand, within RR42_RS01960at 439.679 kb on + strand, within RR42_RS01960at 439.680 kb on - strand, within RR42_RS01960at 439.680 kb on - strand, within RR42_RS01960at 440.119 kb on + strandat 440.120 kb on - strandat 440.120 kb on - strandat 440.120 kb on - strandat 440.177 kb on + strandat 440.177 kb on + strandat 440.177 kb on + strandat 440.177 kb on + strandat 440.178 kb on - strandat 440.178 kb on - strandat 440.178 kb on - strandat 440.178 kb on - strandat 440.178 kb on - strandat 440.178 kb on - strandat 440.182 kb on + strandat 440.183 kb on - strandat 440.183 kb on - strandat 440.183 kb on - strandat 440.183 kb on - strandat 440.183 kb on - strandat 440.236 kb on + strandat 440.236 kb on + strandat 440.237 kb on - strandat 440.237 kb on - strandat 440.242 kb on - strandat 440.242 kb on - strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.254 kb on - strandat 440.254 kb on - strandat 440.254 kb on - strandat 440.283 kb on + strandat 440.283 kb on + strandat 440.283 kb on + strandat 440.284 kb on - strandat 440.284 kb on - strandat 440.354 kb on + strand, within RR42_RS01965at 440.372 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.516 kb on + strand, within RR42_RS01965at 440.517 kb on - strand, within RR42_RS01965at 440.831 kb on + strand, within RR42_RS01965at 440.831 kb on + strand, within RR42_RS01965at 440.831 kb on + strand, within RR42_RS01965at 440.832 kb on - strand, within RR42_RS01965at 440.873 kb on + strand, within RR42_RS01965at 440.873 kb on + strand, within RR42_RS01965at 440.873 kb on + strand, within RR42_RS01965at 440.873 kb on + strand, within RR42_RS01965at 440.873 kb on + strand, within RR42_RS01965at 440.874 kb on - strand, within RR42_RS01965at 440.874 kb on - strand, within RR42_RS01965at 440.874 kb on - strand, within RR42_RS01965at 440.964 kb on + strandat 440.964 kb on + strandat 440.964 kb on + strandat 440.965 kb on - strandat 440.965 kb on - strandat 440.988 kb on + strandat 440.989 kb on - strandat 440.995 kb on - strandat 440.995 kb on - strandat 441.054 kb on + strand, within RR42_RS01970at 441.055 kb on - strand, within RR42_RS01970at 441.055 kb on - strand, within RR42_RS01970at 441.055 kb on - strand, within RR42_RS01970at 441.060 kb on + strand, within RR42_RS01970at 441.060 kb on + strand, within RR42_RS01970at 441.061 kb on - strand, within RR42_RS01970at 441.061 kb on - strand, within RR42_RS01970at 441.061 kb on - strand, within RR42_RS01970at 441.166 kb on + strand, within RR42_RS01970at 441.167 kb on - strand, within RR42_RS01970at 441.195 kb on + strand, within RR42_RS01970at 441.255 kb on + strand, within RR42_RS01970at 441.324 kb on + strand, within RR42_RS01970at 441.324 kb on + strand, within RR42_RS01970at 441.324 kb on + strand, within RR42_RS01970at 441.411 kb on - strand, within RR42_RS01970at 441.621 kb on + strandat 441.621 kb on + strandat 441.622 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
439,409 + +0.3
439,409 + -0.1
439,410 - -1.0
439,490 + RR42_RS01960 0.13 -0.0
439,490 + RR42_RS01960 0.13 +0.5
439,490 + RR42_RS01960 0.13 +0.3
439,490 + RR42_RS01960 0.13 -0.4
439,490 + RR42_RS01960 0.13 +2.9
439,491 - RR42_RS01960 0.13 -1.6
439,491 - RR42_RS01960 0.13 +0.3
439,625 + RR42_RS01960 0.33 -1.2
439,679 + RR42_RS01960 0.41 -0.7
439,679 + RR42_RS01960 0.41 +1.4
439,680 - RR42_RS01960 0.42 +0.2
439,680 - RR42_RS01960 0.42 -0.7
440,119 + +0.4
440,120 - -1.0
440,120 - +0.4
440,120 - +0.5
440,177 + +0.2
440,177 + +1.3
440,177 + +0.2
440,177 + +0.1
440,178 - +0.3
440,178 - +0.1
440,178 - -0.0
440,178 - -0.3
440,178 - +0.5
440,178 - +0.6
440,182 + -0.1
440,183 - -1.5
440,183 - -0.2
440,183 - -0.2
440,183 - +0.0
440,183 - +0.1
440,236 + -0.0
440,236 + +1.1
440,237 - -2.1
440,237 - -0.7
440,242 - +0.3
440,242 - -0.0
440,253 + +0.1
440,253 + -0.0
440,253 + +0.5
440,253 + +0.5
440,253 + -0.2
440,253 + -0.3
440,253 + +0.1
440,253 + -0.3
440,253 + -0.0
440,254 - -0.1
440,254 - +0.2
440,254 - +0.6
440,283 + -0.4
440,283 + -0.0
440,283 + -0.2
440,284 - -0.2
440,284 - +1.7
440,354 + RR42_RS01965 0.12 -0.6
440,372 + RR42_RS01965 0.15 +1.9
440,456 + RR42_RS01965 0.26 -0.6
440,456 + RR42_RS01965 0.26 -0.4
440,456 + RR42_RS01965 0.26 -1.0
440,456 + RR42_RS01965 0.26 +0.1
440,456 + RR42_RS01965 0.26 -0.4
440,456 + RR42_RS01965 0.26 -0.5
440,456 + RR42_RS01965 0.26 +0.4
440,456 + RR42_RS01965 0.26 -0.3
440,516 + RR42_RS01965 0.35 -0.4
440,517 - RR42_RS01965 0.35 +0.1
440,831 + RR42_RS01965 0.80 -0.9
440,831 + RR42_RS01965 0.80 -0.4
440,831 + RR42_RS01965 0.80 +0.0
440,832 - RR42_RS01965 0.80 +0.1
440,873 + RR42_RS01965 0.86 -0.0
440,873 + RR42_RS01965 0.86 +0.1
440,873 + RR42_RS01965 0.86 -1.2
440,873 + RR42_RS01965 0.86 -0.3
440,873 + RR42_RS01965 0.86 +0.6
440,874 - RR42_RS01965 0.86 -1.2
440,874 - RR42_RS01965 0.86 +0.3
440,874 - RR42_RS01965 0.86 -1.4
440,964 + +0.4
440,964 + -0.9
440,964 + -0.6
440,965 - +0.3
440,965 - -0.0
440,988 + +0.6
440,989 - +0.4
440,995 - -0.2
440,995 - -0.2
441,054 + RR42_RS01970 0.12 -0.1
441,055 - RR42_RS01970 0.12 -0.5
441,055 - RR42_RS01970 0.12 +0.2
441,055 - RR42_RS01970 0.12 +0.1
441,060 + RR42_RS01970 0.13 -0.7
441,060 + RR42_RS01970 0.13 -0.1
441,061 - RR42_RS01970 0.13 -0.5
441,061 - RR42_RS01970 0.13 -0.3
441,061 - RR42_RS01970 0.13 +0.4
441,166 + RR42_RS01970 0.29 -0.8
441,167 - RR42_RS01970 0.29 -0.0
441,195 + RR42_RS01970 0.33 +0.4
441,255 + RR42_RS01970 0.43 +0.0
441,324 + RR42_RS01970 0.53 +0.4
441,324 + RR42_RS01970 0.53 -0.8
441,324 + RR42_RS01970 0.53 +1.1
441,411 - RR42_RS01970 0.67 +0.8
441,621 + +0.5
441,621 + +0.8
441,622 - -0.3

Or see this region's nucleotide sequence