Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01710

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01705 and RR42_RS01710 are separated by 141 nucleotidesRR42_RS01710 and RR42_RS01715 are separated by 9 nucleotides RR42_RS01705: RR42_RS01705 - Fis family transcriptional regulator, at 388,503 to 389,819 _RS01705 RR42_RS01710: RR42_RS01710 - tyrosine ammonia-lyase, at 389,961 to 391,559 _RS01710 RR42_RS01715: RR42_RS01715 - ATP-dependent DNA helicase, at 391,569 to 393,677 _RS01715 Position (kb) 389 390 391 392Strain fitness (log2 ratio) -2 -1 0 1at 389.409 kb on + strand, within RR42_RS01705at 389.409 kb on + strand, within RR42_RS01705at 389.697 kb on + strandat 389.697 kb on + strandat 389.721 kb on - strandat 389.721 kb on - strandat 389.790 kb on + strandat 389.887 kb on + strandat 389.936 kb on - strandat 390.126 kb on + strand, within RR42_RS01710at 390.126 kb on + strand, within RR42_RS01710at 390.126 kb on + strand, within RR42_RS01710at 390.127 kb on - strand, within RR42_RS01710at 390.127 kb on - strand, within RR42_RS01710at 390.127 kb on - strand, within RR42_RS01710at 390.161 kb on + strand, within RR42_RS01710at 390.161 kb on + strand, within RR42_RS01710at 390.162 kb on - strand, within RR42_RS01710at 390.162 kb on - strand, within RR42_RS01710at 390.162 kb on - strand, within RR42_RS01710at 390.342 kb on + strand, within RR42_RS01710at 390.493 kb on + strand, within RR42_RS01710at 390.494 kb on - strand, within RR42_RS01710at 390.494 kb on - strand, within RR42_RS01710at 390.538 kb on + strand, within RR42_RS01710at 390.862 kb on - strand, within RR42_RS01710at 391.115 kb on + strand, within RR42_RS01710at 391.332 kb on + strand, within RR42_RS01710at 391.333 kb on - strand, within RR42_RS01710at 391.467 kb on + strandat 391.467 kb on + strandat 391.467 kb on + strandat 391.581 kb on - strandat 391.581 kb on - strandat 391.581 kb on - strandat 391.721 kb on - strandat 391.738 kb on + strandat 391.816 kb on + strand, within RR42_RS01715at 391.817 kb on - strand, within RR42_RS01715at 391.817 kb on - strand, within RR42_RS01715at 391.817 kb on - strand, within RR42_RS01715at 391.819 kb on - strand, within RR42_RS01715at 391.819 kb on - strand, within RR42_RS01715at 391.903 kb on + strand, within RR42_RS01715at 391.957 kb on + strand, within RR42_RS01715at 391.957 kb on + strand, within RR42_RS01715at 391.957 kb on + strand, within RR42_RS01715at 391.958 kb on - strand, within RR42_RS01715at 391.958 kb on - strand, within RR42_RS01715at 392.050 kb on + strand, within RR42_RS01715at 392.050 kb on + strand, within RR42_RS01715at 392.051 kb on - strand, within RR42_RS01715at 392.051 kb on - strand, within RR42_RS01715at 392.334 kb on + strand, within RR42_RS01715at 392.334 kb on + strand, within RR42_RS01715at 392.334 kb on + strand, within RR42_RS01715at 392.335 kb on - strand, within RR42_RS01715at 392.335 kb on - strand, within RR42_RS01715

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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389,409 + RR42_RS01705 0.69 -1.2
389,409 + RR42_RS01705 0.69 -0.9
389,697 + -1.1
389,697 + -1.5
389,721 - -1.4
389,721 - -1.4
389,790 + +0.8
389,887 + -0.2
389,936 - +0.1
390,126 + RR42_RS01710 0.10 -0.7
390,126 + RR42_RS01710 0.10 +0.4
390,126 + RR42_RS01710 0.10 +1.1
390,127 - RR42_RS01710 0.10 +0.1
390,127 - RR42_RS01710 0.10 +0.5
390,127 - RR42_RS01710 0.10 -0.5
390,161 + RR42_RS01710 0.13 -0.4
390,161 + RR42_RS01710 0.13 -0.5
390,162 - RR42_RS01710 0.13 -0.7
390,162 - RR42_RS01710 0.13 +0.1
390,162 - RR42_RS01710 0.13 -0.1
390,342 + RR42_RS01710 0.24 -0.1
390,493 + RR42_RS01710 0.33 +0.2
390,494 - RR42_RS01710 0.33 +0.3
390,494 - RR42_RS01710 0.33 -0.8
390,538 + RR42_RS01710 0.36 +0.3
390,862 - RR42_RS01710 0.56 -0.5
391,115 + RR42_RS01710 0.72 +1.1
391,332 + RR42_RS01710 0.86 -0.2
391,333 - RR42_RS01710 0.86 +0.1
391,467 + -0.5
391,467 + -0.5
391,467 + +1.7
391,581 - -0.1
391,581 - -0.9
391,581 - -0.5
391,721 - +0.1
391,738 + -0.4
391,816 + RR42_RS01715 0.12 -0.3
391,817 - RR42_RS01715 0.12 +0.2
391,817 - RR42_RS01715 0.12 -0.0
391,817 - RR42_RS01715 0.12 +0.1
391,819 - RR42_RS01715 0.12 -0.4
391,819 - RR42_RS01715 0.12 +0.3
391,903 + RR42_RS01715 0.16 -0.6
391,957 + RR42_RS01715 0.18 -0.1
391,957 + RR42_RS01715 0.18 -0.3
391,957 + RR42_RS01715 0.18 -0.9
391,958 - RR42_RS01715 0.18 -0.7
391,958 - RR42_RS01715 0.18 -0.3
392,050 + RR42_RS01715 0.23 +0.7
392,050 + RR42_RS01715 0.23 +0.1
392,051 - RR42_RS01715 0.23 -1.9
392,051 - RR42_RS01715 0.23 +0.7
392,334 + RR42_RS01715 0.36 +0.6
392,334 + RR42_RS01715 0.36 +1.1
392,334 + RR42_RS01715 0.36 -0.5
392,335 - RR42_RS01715 0.36 -0.2
392,335 - RR42_RS01715 0.36 -1.3

Or see this region's nucleotide sequence