Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01705 and RR42_RS01710 are separated by 141 nucleotides RR42_RS01710 and RR42_RS01715 are separated by 9 nucleotides
RR42_RS01705: RR42_RS01705 - Fis family transcriptional regulator, at 388,503 to 389,819
_RS01705
RR42_RS01710: RR42_RS01710 - tyrosine ammonia-lyase, at 389,961 to 391,559
_RS01710
RR42_RS01715: RR42_RS01715 - ATP-dependent DNA helicase, at 391,569 to 393,677
_RS01715
Position (kb) 389
390
391
392 Strain fitness (log2 ratio) -2
-1
0
1 at 389.409 kb on + strand, within RR42_RS01705 at 389.409 kb on + strand, within RR42_RS01705 at 389.697 kb on + strand at 389.697 kb on + strand at 389.721 kb on - strand at 389.721 kb on - strand at 389.790 kb on + strand at 389.887 kb on + strand at 389.936 kb on - strand at 390.126 kb on + strand, within RR42_RS01710 at 390.126 kb on + strand, within RR42_RS01710 at 390.126 kb on + strand, within RR42_RS01710 at 390.127 kb on - strand, within RR42_RS01710 at 390.127 kb on - strand, within RR42_RS01710 at 390.127 kb on - strand, within RR42_RS01710 at 390.161 kb on + strand, within RR42_RS01710 at 390.161 kb on + strand, within RR42_RS01710 at 390.162 kb on - strand, within RR42_RS01710 at 390.162 kb on - strand, within RR42_RS01710 at 390.162 kb on - strand, within RR42_RS01710 at 390.342 kb on + strand, within RR42_RS01710 at 390.493 kb on + strand, within RR42_RS01710 at 390.494 kb on - strand, within RR42_RS01710 at 390.494 kb on - strand, within RR42_RS01710 at 390.538 kb on + strand, within RR42_RS01710 at 390.862 kb on - strand, within RR42_RS01710 at 391.115 kb on + strand, within RR42_RS01710 at 391.332 kb on + strand, within RR42_RS01710 at 391.333 kb on - strand, within RR42_RS01710 at 391.467 kb on + strand at 391.467 kb on + strand at 391.467 kb on + strand at 391.581 kb on - strand at 391.581 kb on - strand at 391.581 kb on - strand at 391.721 kb on - strand at 391.738 kb on + strand at 391.816 kb on + strand, within RR42_RS01715 at 391.817 kb on - strand, within RR42_RS01715 at 391.817 kb on - strand, within RR42_RS01715 at 391.817 kb on - strand, within RR42_RS01715 at 391.819 kb on - strand, within RR42_RS01715 at 391.819 kb on - strand, within RR42_RS01715 at 391.903 kb on + strand, within RR42_RS01715 at 391.957 kb on + strand, within RR42_RS01715 at 391.957 kb on + strand, within RR42_RS01715 at 391.957 kb on + strand, within RR42_RS01715 at 391.958 kb on - strand, within RR42_RS01715 at 391.958 kb on - strand, within RR42_RS01715 at 392.050 kb on + strand, within RR42_RS01715 at 392.050 kb on + strand, within RR42_RS01715 at 392.051 kb on - strand, within RR42_RS01715 at 392.051 kb on - strand, within RR42_RS01715 at 392.334 kb on + strand, within RR42_RS01715 at 392.334 kb on + strand, within RR42_RS01715 at 392.334 kb on + strand, within RR42_RS01715 at 392.335 kb on - strand, within RR42_RS01715 at 392.335 kb on - strand, within RR42_RS01715
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 389,409 + RR42_RS01705 0.69 -1.2 389,409 + RR42_RS01705 0.69 -0.9 389,697 + -1.1 389,697 + -1.5 389,721 - -1.4 389,721 - -1.4 389,790 + +0.8 389,887 + -0.2 389,936 - +0.1 390,126 + RR42_RS01710 0.10 -0.7 390,126 + RR42_RS01710 0.10 +0.4 390,126 + RR42_RS01710 0.10 +1.1 390,127 - RR42_RS01710 0.10 +0.1 390,127 - RR42_RS01710 0.10 +0.5 390,127 - RR42_RS01710 0.10 -0.5 390,161 + RR42_RS01710 0.13 -0.4 390,161 + RR42_RS01710 0.13 -0.5 390,162 - RR42_RS01710 0.13 -0.7 390,162 - RR42_RS01710 0.13 +0.1 390,162 - RR42_RS01710 0.13 -0.1 390,342 + RR42_RS01710 0.24 -0.1 390,493 + RR42_RS01710 0.33 +0.2 390,494 - RR42_RS01710 0.33 +0.3 390,494 - RR42_RS01710 0.33 -0.8 390,538 + RR42_RS01710 0.36 +0.3 390,862 - RR42_RS01710 0.56 -0.5 391,115 + RR42_RS01710 0.72 +1.1 391,332 + RR42_RS01710 0.86 -0.2 391,333 - RR42_RS01710 0.86 +0.1 391,467 + -0.5 391,467 + -0.5 391,467 + +1.7 391,581 - -0.1 391,581 - -0.9 391,581 - -0.5 391,721 - +0.1 391,738 + -0.4 391,816 + RR42_RS01715 0.12 -0.3 391,817 - RR42_RS01715 0.12 +0.2 391,817 - RR42_RS01715 0.12 -0.0 391,817 - RR42_RS01715 0.12 +0.1 391,819 - RR42_RS01715 0.12 -0.4 391,819 - RR42_RS01715 0.12 +0.3 391,903 + RR42_RS01715 0.16 -0.6 391,957 + RR42_RS01715 0.18 -0.1 391,957 + RR42_RS01715 0.18 -0.3 391,957 + RR42_RS01715 0.18 -0.9 391,958 - RR42_RS01715 0.18 -0.7 391,958 - RR42_RS01715 0.18 -0.3 392,050 + RR42_RS01715 0.23 +0.7 392,050 + RR42_RS01715 0.23 +0.1 392,051 - RR42_RS01715 0.23 -1.9 392,051 - RR42_RS01715 0.23 +0.7 392,334 + RR42_RS01715 0.36 +0.6 392,334 + RR42_RS01715 0.36 +1.1 392,334 + RR42_RS01715 0.36 -0.5 392,335 - RR42_RS01715 0.36 -0.2 392,335 - RR42_RS01715 0.36 -1.3
Or see this region's nucleotide sequence