Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01465

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01460 and RR42_RS01465 are separated by 644 nucleotidesRR42_RS01465 and RR42_RS01470 are separated by 56 nucleotidesRR42_RS01470 and RR42_RS01475 are separated by 224 nucleotides RR42_RS01460: RR42_RS01460 - glucosamine--fructose-6-phosphate aminotransferase, at 328,636 to 330,474 _RS01460 RR42_RS01465: RR42_RS01465 - histidine kinase, at 331,119 to 333,086 _RS01465 RR42_RS01470: RR42_RS01470 - hypothetical protein, at 333,143 to 333,856 _RS01470 RR42_RS01475: RR42_RS01475 - hypothetical protein, at 334,081 to 334,401 _RS01475 Position (kb) 331 332 333 334Strain fitness (log2 ratio) -1 0 1 2at 330.473 kb on - strandat 330.485 kb on - strandat 330.485 kb on - strandat 330.556 kb on + strandat 330.556 kb on + strandat 330.557 kb on - strandat 330.557 kb on - strandat 330.679 kb on - strandat 330.746 kb on + strandat 330.868 kb on + strandat 330.868 kb on + strandat 330.869 kb on - strandat 330.869 kb on - strandat 330.869 kb on - strandat 330.869 kb on - strandat 330.869 kb on - strandat 330.873 kb on + strandat 330.873 kb on + strandat 331.521 kb on + strand, within RR42_RS01465at 331.614 kb on + strand, within RR42_RS01465at 331.615 kb on - strand, within RR42_RS01465at 331.788 kb on + strand, within RR42_RS01465at 331.788 kb on + strand, within RR42_RS01465at 331.789 kb on - strand, within RR42_RS01465at 331.992 kb on + strand, within RR42_RS01465at 331.995 kb on + strand, within RR42_RS01465at 331.996 kb on - strand, within RR42_RS01465at 331.996 kb on - strand, within RR42_RS01465at 331.996 kb on - strand, within RR42_RS01465at 331.996 kb on - strand, within RR42_RS01465at 332.052 kb on + strand, within RR42_RS01465at 332.052 kb on + strand, within RR42_RS01465at 332.053 kb on - strand, within RR42_RS01465at 332.053 kb on - strand, within RR42_RS01465at 332.053 kb on - strand, within RR42_RS01465at 332.076 kb on + strand, within RR42_RS01465at 332.076 kb on + strand, within RR42_RS01465at 332.076 kb on + strand, within RR42_RS01465at 332.076 kb on + strand, within RR42_RS01465at 332.076 kb on + strand, within RR42_RS01465at 332.076 kb on + strand, within RR42_RS01465at 332.077 kb on - strand, within RR42_RS01465at 332.077 kb on - strand, within RR42_RS01465at 332.077 kb on - strand, within RR42_RS01465at 332.077 kb on - strand, within RR42_RS01465at 332.077 kb on - strand, within RR42_RS01465at 332.077 kb on - strand, within RR42_RS01465at 332.077 kb on - strand, within RR42_RS01465at 332.118 kb on + strand, within RR42_RS01465at 332.119 kb on - strand, within RR42_RS01465at 332.119 kb on - strand, within RR42_RS01465at 332.119 kb on - strand, within RR42_RS01465at 332.181 kb on + strand, within RR42_RS01465at 332.181 kb on + strand, within RR42_RS01465at 332.181 kb on + strand, within RR42_RS01465at 332.182 kb on - strand, within RR42_RS01465at 332.182 kb on - strand, within RR42_RS01465at 332.182 kb on - strand, within RR42_RS01465at 332.182 kb on - strand, within RR42_RS01465at 332.182 kb on - strand, within RR42_RS01465at 332.182 kb on - strand, within RR42_RS01465at 332.475 kb on + strand, within RR42_RS01465at 332.475 kb on + strand, within RR42_RS01465at 332.476 kb on - strand, within RR42_RS01465at 332.477 kb on + strand, within RR42_RS01465at 332.796 kb on + strand, within RR42_RS01465at 332.796 kb on + strand, within RR42_RS01465at 332.796 kb on + strand, within RR42_RS01465at 332.796 kb on + strand, within RR42_RS01465at 332.797 kb on - strand, within RR42_RS01465at 332.797 kb on - strand, within RR42_RS01465at 332.797 kb on - strand, within RR42_RS01465at 332.803 kb on - strand, within RR42_RS01465at 333.227 kb on + strand, within RR42_RS01470at 333.228 kb on - strand, within RR42_RS01470at 333.300 kb on + strand, within RR42_RS01470at 333.301 kb on - strand, within RR42_RS01470at 333.446 kb on + strand, within RR42_RS01470at 333.630 kb on + strand, within RR42_RS01470at 333.630 kb on + strand, within RR42_RS01470at 333.630 kb on + strand, within RR42_RS01470at 333.631 kb on - strand, within RR42_RS01470at 333.631 kb on - strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.705 kb on - strand, within RR42_RS01470at 333.705 kb on - strand, within RR42_RS01470at 333.705 kb on - strand, within RR42_RS01470at 333.815 kb on + strandat 333.816 kb on - strandat 333.928 kb on - strandat 333.958 kb on + strandat 333.959 kb on - strandat 334.066 kb on + strandat 334.066 kb on + strandat 334.066 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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330,473 - +0.6
330,485 - +0.5
330,485 - -0.0
330,556 + +0.2
330,556 + +1.1
330,557 - -0.6
330,557 - -0.6
330,679 - -0.2
330,746 + +0.4
330,868 + -0.0
330,868 + -0.1
330,869 - +0.5
330,869 - +0.8
330,869 - -0.2
330,869 - -0.5
330,869 - +1.2
330,873 + -1.2
330,873 + -0.9
331,521 + RR42_RS01465 0.20 +0.9
331,614 + RR42_RS01465 0.25 -0.3
331,615 - RR42_RS01465 0.25 -0.1
331,788 + RR42_RS01465 0.34 +0.2
331,788 + RR42_RS01465 0.34 -0.6
331,789 - RR42_RS01465 0.34 +0.0
331,992 + RR42_RS01465 0.44 -1.2
331,995 + RR42_RS01465 0.45 +0.5
331,996 - RR42_RS01465 0.45 +0.2
331,996 - RR42_RS01465 0.45 +1.0
331,996 - RR42_RS01465 0.45 -0.2
331,996 - RR42_RS01465 0.45 +0.4
332,052 + RR42_RS01465 0.47 +0.0
332,052 + RR42_RS01465 0.47 +0.2
332,053 - RR42_RS01465 0.47 +0.1
332,053 - RR42_RS01465 0.47 -0.3
332,053 - RR42_RS01465 0.47 -0.4
332,076 + RR42_RS01465 0.49 -0.5
332,076 + RR42_RS01465 0.49 -0.3
332,076 + RR42_RS01465 0.49 -1.2
332,076 + RR42_RS01465 0.49 +0.2
332,076 + RR42_RS01465 0.49 +0.3
332,076 + RR42_RS01465 0.49 +0.6
332,077 - RR42_RS01465 0.49 +0.2
332,077 - RR42_RS01465 0.49 -0.6
332,077 - RR42_RS01465 0.49 -0.7
332,077 - RR42_RS01465 0.49 -0.1
332,077 - RR42_RS01465 0.49 -0.1
332,077 - RR42_RS01465 0.49 -1.7
332,077 - RR42_RS01465 0.49 -0.0
332,118 + RR42_RS01465 0.51 +0.1
332,119 - RR42_RS01465 0.51 -0.4
332,119 - RR42_RS01465 0.51 +0.3
332,119 - RR42_RS01465 0.51 +0.2
332,181 + RR42_RS01465 0.54 +2.1
332,181 + RR42_RS01465 0.54 +0.9
332,181 + RR42_RS01465 0.54 +1.1
332,182 - RR42_RS01465 0.54 -0.1
332,182 - RR42_RS01465 0.54 -1.7
332,182 - RR42_RS01465 0.54 -0.7
332,182 - RR42_RS01465 0.54 +0.2
332,182 - RR42_RS01465 0.54 +0.1
332,182 - RR42_RS01465 0.54 +2.1
332,475 + RR42_RS01465 0.69 +0.3
332,475 + RR42_RS01465 0.69 -0.6
332,476 - RR42_RS01465 0.69 +0.5
332,477 + RR42_RS01465 0.69 +0.6
332,796 + RR42_RS01465 0.85 -0.3
332,796 + RR42_RS01465 0.85 +1.0
332,796 + RR42_RS01465 0.85 -0.1
332,796 + RR42_RS01465 0.85 +0.9
332,797 - RR42_RS01465 0.85 -0.8
332,797 - RR42_RS01465 0.85 +0.7
332,797 - RR42_RS01465 0.85 +0.4
332,803 - RR42_RS01465 0.86 +0.1
333,227 + RR42_RS01470 0.12 +0.4
333,228 - RR42_RS01470 0.12 +0.2
333,300 + RR42_RS01470 0.22 -0.6
333,301 - RR42_RS01470 0.22 +0.7
333,446 + RR42_RS01470 0.42 +0.4
333,630 + RR42_RS01470 0.68 -1.2
333,630 + RR42_RS01470 0.68 +1.1
333,630 + RR42_RS01470 0.68 -0.3
333,631 - RR42_RS01470 0.68 -1.2
333,631 - RR42_RS01470 0.68 -0.0
333,704 + RR42_RS01470 0.79 -1.1
333,704 + RR42_RS01470 0.79 +0.6
333,704 + RR42_RS01470 0.79 +0.3
333,704 + RR42_RS01470 0.79 -0.3
333,704 + RR42_RS01470 0.79 +0.7
333,705 - RR42_RS01470 0.79 +0.5
333,705 - RR42_RS01470 0.79 -0.2
333,705 - RR42_RS01470 0.79 +0.4
333,815 + -0.0
333,816 - +0.8
333,928 - -0.2
333,958 + -0.9
333,959 - +0.1
334,066 + -0.1
334,066 + -0.4
334,066 + +0.4

Or see this region's nucleotide sequence