Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07210

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
1,319,144	-		MMJJ_RS07200	0.43	+1.8
1,319,145	+		MMJJ_RS07200	0.43	+1.3
1,319,157	+		MMJJ_RS07200	0.44	-0.1
1,319,163	+		MMJJ_RS07200	0.45	+0.5
1,319,264	+		MMJJ_RS07200	0.54	-0.5
1,319,319	+		MMJJ_RS07200	0.58	-0.3
1,319,324	-		MMJJ_RS07200	0.59	-0.5
1,319,338	-		MMJJ_RS07200	0.60	+0.8
1,319,346	-		MMJJ_RS07200	0.61	-0.6
1,319,366	-		MMJJ_RS07200	0.62	+1.4
1,319,367	+		MMJJ_RS07200	0.63	+1.6
1,319,369	-		MMJJ_RS07200	0.63	+0.0
1,319,369	-		MMJJ_RS07200	0.63	+1.1
1,319,370	+		MMJJ_RS07200	0.63	-1.2
1,319,370	+		MMJJ_RS07200	0.63	-0.2
1,319,387	-		MMJJ_RS07200	0.64	-0.7
1,319,387	-		MMJJ_RS07200	0.64	-1.1
1,319,388	+		MMJJ_RS07200	0.64	-0.6
1,319,388	+		MMJJ_RS07200	0.64	-1.0
1,319,396	+		MMJJ_RS07200	0.65	+0.4
1,319,430	-		MMJJ_RS07200	0.68	+0.4
1,319,431	+		MMJJ_RS07200	0.68	+0.0
1,319,454	-		MMJJ_RS07200	0.70	+1.2
1,319,454	-		MMJJ_RS07200	0.70	-0.5
1,319,455	+		MMJJ_RS07200	0.70	-0.5
1,319,455	+		MMJJ_RS07200	0.70	+2.0
1,319,455	+		MMJJ_RS07200	0.70	+2.3
1,319,455	+				+1.8
1,319,455	+		MMJJ_RS07200	0.70	-0.2
1,319,459	-		MMJJ_RS07200	0.71	+0.8
1,319,464	-		MMJJ_RS07200	0.71	-0.3
1,319,465	+		MMJJ_RS07200	0.71	-0.5
1,319,465	+		MMJJ_RS07200	0.71	+1.0
1,319,465	+		MMJJ_RS07200	0.71	+0.5
1,319,465	+		MMJJ_RS07200	0.71	-0.1
1,319,503	+		MMJJ_RS07200	0.74	+0.5
1,319,517	-		MMJJ_RS07200	0.76	-0.1
1,319,537	-		MMJJ_RS07200	0.77	+0.9
1,319,537	-		MMJJ_RS07200	0.77	+2.4
1,319,538	+		MMJJ_RS07200	0.77	+1.2
1,319,538	+		MMJJ_RS07200	0.77	-0.1
1,319,553	+		MMJJ_RS07200	0.79	+0.9
1,319,577	-		MMJJ_RS07200	0.81	+1.2
1,319,577	-		MMJJ_RS07200	0.81	-2.4
1,319,577	-		MMJJ_RS07200	0.81	+1.8
1,319,577	-		MMJJ_RS07200	0.81	+0.6
1,319,578	+		MMJJ_RS07200	0.81	-0.8
1,319,578	+		MMJJ_RS07200	0.81	+1.3
1,319,578	+		MMJJ_RS07200	0.81	-0.5
1,319,581	-		MMJJ_RS07200	0.81	+0.1
1,319,582	+		MMJJ_RS07200	0.81	-0.6
1,319,582	+		MMJJ_RS07200	0.81	+0.7
1,319,643	+		MMJJ_RS07200	0.87	-0.2
1,319,649	-		MMJJ_RS07200	0.87	+0.6
1,319,661	-		MMJJ_RS07200	0.88	+2.1
1,319,662	+		MMJJ_RS07200	0.88	+2.4
1,319,663	-		MMJJ_RS07200	0.88	+1.8
1,319,664	+		MMJJ_RS07200	0.88	-0.1
1,319,664	+		MMJJ_RS07200	0.88	+0.5
1,319,716	+				-1.5
1,319,716	+				+2.2
1,319,730	+				+2.3
1,319,733	-				-0.2
1,319,739	+				+1.5
1,319,739	+				+0.9
1,319,814	-				-0.7
1,319,824	-				+2.2
1,319,850	-				-0.9
1,319,864	-				+1.5
1,319,966	-		MMJJ_RS07205	0.47	+0.1
1,319,966	-		MMJJ_RS07205	0.47	+0.5
1,319,990	-		MMJJ_RS07205	0.57	+1.6
1,320,025	+		MMJJ_RS07205	0.71	+0.1
1,320,026	-		MMJJ_RS07205	0.71	+1.7
1,320,026	-		MMJJ_RS07205	0.71	-0.4
1,320,026	-		MMJJ_RS07205	0.71	+0.3
1,320,026	-		MMJJ_RS07205	0.71	-0.6
1,320,026	-		MMJJ_RS07205	0.71	-0.3
1,320,027	+		MMJJ_RS07205	0.72	+0.0
1,320,027	+		MMJJ_RS07205	0.72	+0.6
1,320,027	+		MMJJ_RS07205	0.72	+0.2
1,320,051	+		MMJJ_RS07205	0.81	-0.6
1,320,072	-				+1.6
1,320,094	-				+2.0
1,320,107	-				-0.3
1,320,108	+				+1.6
1,320,118	-				-1.1
1,320,139	-				-0.9
1,320,140	+				+2.2
1,320,147	-				+0.5
1,320,209	+				-1.0
1,320,216	-				+0.5
1,320,216	-				-0.1
1,320,217	+				-0.6
1,320,221	+				+1.1
1,320,221	+				-0.1
1,320,266	-		MMJJ_RS07210	0.15	+0.1
1,320,291	-		MMJJ_RS07210	0.18	+2.6
1,320,291	-		MMJJ_RS07210	0.18	+2.1
1,320,292	+		MMJJ_RS07210	0.18	+0.9
1,320,292	+		MMJJ_RS07210	0.18	+0.9
1,320,292	+		MMJJ_RS07210	0.18	+0.1
1,320,293	-		MMJJ_RS07210	0.18	+1.4
1,320,293	-		MMJJ_RS07210	0.18	+0.8
1,320,319	+		MMJJ_RS07210	0.21	-0.1
1,320,351	-		MMJJ_RS07210	0.25	+0.7
1,320,394	-		MMJJ_RS07210	0.30	-1.4
1,320,410	-		MMJJ_RS07210	0.32	-0.6
1,320,438	-		MMJJ_RS07210	0.35	+0.0
1,320,438	-		MMJJ_RS07210	0.35	+2.3
1,320,466	-		MMJJ_RS07210	0.38	-1.3
1,320,467	+		MMJJ_RS07210	0.38	+1.5
1,320,467	+		MMJJ_RS07210	0.38	+4.0
1,320,471	-		MMJJ_RS07210	0.39	+1.6
1,320,472	+		MMJJ_RS07210	0.39	-0.7
1,320,472	+		MMJJ_RS07210	0.39	+0.3
1,320,491	+		MMJJ_RS07210	0.41	-1.2
1,320,491	+		MMJJ_RS07210	0.41	+1.2
1,320,491	+		MMJJ_RS07210	0.41	+0.1
1,320,506	-		MMJJ_RS07210	0.43	-0.5
1,320,506	-		MMJJ_RS07210	0.43	+0.0
1,320,507	+		MMJJ_RS07210	0.43	+2.0
1,320,541	+		MMJJ_RS07210	0.47	+0.3
1,320,541	+		MMJJ_RS07210	0.47	+0.2
1,320,541	+		MMJJ_RS07210	0.47	+2.2
1,320,568	+		MMJJ_RS07210	0.50	+0.1
1,320,573	-		MMJJ_RS07210	0.51	-1.2
1,320,573	-		MMJJ_RS07210	0.51	+0.8
1,320,573	-		MMJJ_RS07210	0.51	+1.3
1,320,573	-		MMJJ_RS07210	0.51	+1.7
1,320,573	-		MMJJ_RS07210	0.51	+0.5
1,320,574	+		MMJJ_RS07210	0.51	-1.4
1,320,580	+		MMJJ_RS07210	0.52	+1.8
1,320,614	-		MMJJ_RS07210	0.56	+2.1
1,320,615	+		MMJJ_RS07210	0.56	-0.8
1,320,619	+		MMJJ_RS07210	0.56	+0.3
1,320,731	-		MMJJ_RS07210	0.69	+2.1
1,320,820	-		MMJJ_RS07210	0.80	-0.3
1,320,821	+		MMJJ_RS07210	0.80	+1.1
1,320,824	-		MMJJ_RS07210	0.80	+2.8
1,320,824	-		MMJJ_RS07210	0.80	+0.5
1,320,825	+		MMJJ_RS07210	0.80	+0.4
1,320,826	-		MMJJ_RS07210	0.80	+1.1
1,320,826	-		MMJJ_RS07210	0.80	+0.3
1,320,826	-		MMJJ_RS07210	0.80	+0.0
1,320,826	-		MMJJ_RS07210	0.80	+0.5
1,320,827	+		MMJJ_RS07210	0.81	+0.2
1,320,827	+		MMJJ_RS07210	0.81	+0.6
1,320,865	-		MMJJ_RS07210	0.85	+0.1
1,320,993	+				+0.4
1,321,015	+				+1.6
1,321,015	+				-0.6
1,321,015	+				-0.3
1,321,040	-				-1.3
1,321,069	-				-0.6
1,321,069	-				+0.7
1,321,070	+				-0.7
1,321,070	+				+1.0
1,321,077	-				-0.6
1,321,077	-				+0.4
1,321,078	+				+1.3
1,321,078	+				+0.2
1,321,078	+				+0.6
1,321,167	+		MMJJ_RS07215	0.13	+0.2
1,321,167	+		MMJJ_RS07215	0.13	-0.6
1,321,182	+		MMJJ_RS07215	0.14	-0.5
1,321,223	+		MMJJ_RS07215	0.18	+2.5
1,321,224	-		MMJJ_RS07215	0.18	+0.9
1,321,224	-		MMJJ_RS07215	0.18	+1.2
1,321,225	+		MMJJ_RS07215	0.18	-0.3
1,321,225	+		MMJJ_RS07215	0.18	+0.9
1,321,225	+		MMJJ_RS07215	0.18	+1.0
1,321,228	-		MMJJ_RS07215	0.19	+1.6
1,321,228	-		MMJJ_RS07215	0.19	-0.1
1,321,229	+		MMJJ_RS07215	0.19	+0.9
1,321,234	+		MMJJ_RS07215	0.19	+0.9
1,321,237	-		MMJJ_RS07215	0.20	+0.6
1,321,237	-		MMJJ_RS07215	0.20	+0.7
1,321,238	+		MMJJ_RS07215	0.20	-0.9
1,321,238	+		MMJJ_RS07215	0.20	+1.1
1,321,238	+		MMJJ_RS07215	0.20	-0.7
1,321,261	-		MMJJ_RS07215	0.22	+1.5
1,321,265	-		MMJJ_RS07215	0.22	+1.0
1,321,265	-		MMJJ_RS07215	0.22	+0.6
1,321,265	-		MMJJ_RS07215	0.22	-0.7
1,321,266	+		MMJJ_RS07215	0.23	-0.0
1,321,285	-		MMJJ_RS07215	0.24	-0.2
1,321,300	-		MMJJ_RS07215	0.26	+0.1
1,321,300	-		MMJJ_RS07215	0.26	-1.4
1,321,301	+		MMJJ_RS07215	0.26	+2.4
1,321,329	-		MMJJ_RS07215	0.29	+0.8
1,321,329	-		MMJJ_RS07215	0.29	+0.7
1,321,406	+		MMJJ_RS07215	0.36	+0.1
1,321,423	-		MMJJ_RS07215	0.38	-0.7
1,321,462	-		MMJJ_RS07215	0.42	+1.4
1,321,462	-		MMJJ_RS07215	0.42	-0.6
1,321,462	-		MMJJ_RS07215	0.42	+0.2
1,321,462	-		MMJJ_RS07215	0.42	-0.4
1,321,462	-		MMJJ_RS07215	0.42	+0.9
1,321,463	+		MMJJ_RS07215	0.42	+2.1
1,321,463	+		MMJJ_RS07215	0.42	+1.0
1,321,613	+		MMJJ_RS07215	0.57	-0.5
1,321,627	-		MMJJ_RS07215	0.58	-0.8
1,321,628	+		MMJJ_RS07215	0.58	+1.4
1,321,646	+		MMJJ_RS07215	0.60	+0.7
1,321,651	-		MMJJ_RS07215	0.61	+1.4
1,321,660	+		MMJJ_RS07215	0.62	+4.5
1,321,679	+		MMJJ_RS07215	0.63	+0.7
1,321,685	+		MMJJ_RS07215	0.64	+0.3
1,321,687	-		MMJJ_RS07215	0.64	-0.8
1,321,695	+		MMJJ_RS07215	0.65	-0.6
1,321,697	-		MMJJ_RS07215	0.65	+0.5
1,321,717	-		MMJJ_RS07215	0.67	+0.2
1,321,718	+		MMJJ_RS07215	0.67	+0.3
1,321,718	+		MMJJ_RS07215	0.67	+1.3
1,321,718	+		MMJJ_RS07215	0.67	-1.5
1,321,719	-		MMJJ_RS07215	0.67	-0.9
1,321,719	-		MMJJ_RS07215	0.67	+0.6
1,321,720	+		MMJJ_RS07215	0.68	+0.7
1,321,739	+		MMJJ_RS07215	0.69	-0.2
1,321,783	-		MMJJ_RS07215	0.74	+0.8
1,321,784	+		MMJJ_RS07215	0.74	+0.3
1,321,838	+		MMJJ_RS07215	0.79	-0.6
1,321,873	-		MMJJ_RS07215	0.83	+0.2
1,321,874	+		MMJJ_RS07215	0.83	-0.9
1,321,874	+		MMJJ_RS07215	0.83	+0.8
1,321,912	-		MMJJ_RS07215	0.87	+1.9
1,321,926	-		MMJJ_RS07215	0.88	+0.4
1,321,928	-		MMJJ_RS07215	0.88	+1.7
1,321,928	-		MMJJ_RS07215	0.88	-0.6
1,321,929	+		MMJJ_RS07215	0.88	+1.3
1,321,959	-				-0.9
1,321,959	-				+0.7