Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03425

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03410 and MMJJ_RS03415 are separated by 3 nucleotidesMMJJ_RS03415 and MMJJ_RS03420 overlap by 8 nucleotidesMMJJ_RS03420 and MMJJ_RS03425 are separated by 0 nucleotidesMMJJ_RS03425 and MMJJ_RS03430 are separated by 220 nucleotidesMMJJ_RS03430 and MMJJ_RS03435 are separated by 115 nucleotides MMJJ_RS03410: MMJJ_RS03410 - hypothetical protein, at 642,234 to 642,650 _RS03410 MMJJ_RS03415: MMJJ_RS03415 - hypothetical protein, at 642,654 to 643,091 _RS03415 MMJJ_RS03420: MMJJ_RS03420 - hypothetical protein, at 643,084 to 643,359 _RS03420 MMJJ_RS03425: MMJJ_RS03425 - DUF2080 family transposase-associated protein, at 643,360 to 643,485 _RS03425 MMJJ_RS03430: MMJJ_RS03430 - winged helix-turn-helix domain-containing protein, at 643,706 to 644,071 _RS03430 MMJJ_RS03435: MMJJ_RS03435 - hypothetical protein, at 644,187 to 645,512 _RS03435 Position (kb) 643 644Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 642.368 kb on - strand, within MMJJ_RS03410at 642.420 kb on - strand, within MMJJ_RS03410at 642.508 kb on - strand, within MMJJ_RS03410at 642.540 kb on - strand, within MMJJ_RS03410at 642.595 kb on - strand, within MMJJ_RS03410at 642.656 kb on + strandat 642.734 kb on + strand, within MMJJ_RS03415at 642.741 kb on - strand, within MMJJ_RS03415at 642.795 kb on + strand, within MMJJ_RS03415at 642.821 kb on - strand, within MMJJ_RS03415at 642.821 kb on - strand, within MMJJ_RS03415at 642.873 kb on - strand, within MMJJ_RS03415at 642.891 kb on - strand, within MMJJ_RS03415at 642.899 kb on + strand, within MMJJ_RS03415at 642.899 kb on + strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.957 kb on - strand, within MMJJ_RS03415at 642.958 kb on + strand, within MMJJ_RS03415at 642.988 kb on - strand, within MMJJ_RS03415at 643.065 kb on + strandat 643.071 kb on + strandat 643.071 kb on + strandat 643.108 kb on - strandat 643.116 kb on + strand, within MMJJ_RS03420at 643.116 kb on + strand, within MMJJ_RS03420at 643.116 kb on + strand, within MMJJ_RS03420at 643.133 kb on - strand, within MMJJ_RS03420at 643.134 kb on + strand, within MMJJ_RS03420at 643.134 kb on + strand, within MMJJ_RS03420at 643.188 kb on + strand, within MMJJ_RS03420at 643.213 kb on - strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.217 kb on - strand, within MMJJ_RS03420at 643.217 kb on - strand, within MMJJ_RS03420at 643.218 kb on + strand, within MMJJ_RS03420at 643.232 kb on + strand, within MMJJ_RS03420at 643.238 kb on - strand, within MMJJ_RS03420at 643.239 kb on + strand, within MMJJ_RS03420at 643.279 kb on - strand, within MMJJ_RS03420at 643.280 kb on + strand, within MMJJ_RS03420at 643.312 kb on - strand, within MMJJ_RS03420at 643.313 kb on + strand, within MMJJ_RS03420at 643.313 kb on + strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.318 kb on + strand, within MMJJ_RS03420at 643.319 kb on - strand, within MMJJ_RS03420at 643.320 kb on + strand, within MMJJ_RS03420at 643.320 kb on + strand, within MMJJ_RS03420at 643.362 kb on + strandat 643.393 kb on - strand, within MMJJ_RS03425at 643.395 kb on - strand, within MMJJ_RS03425at 643.404 kb on - strand, within MMJJ_RS03425at 643.405 kb on + strand, within MMJJ_RS03425at 643.466 kb on + strand, within MMJJ_RS03425at 643.591 kb on - strandat 643.591 kb on - strandat 643.591 kb on - strandat 643.591 kb on - strandat 643.592 kb on + strandat 643.592 kb on + strandat 643.592 kb on + strandat 643.592 kb on + strandat 643.661 kb on - strandat 643.667 kb on + strandat 643.682 kb on - strandat 643.779 kb on + strand, within MMJJ_RS03430at 643.835 kb on + strandat 643.845 kb on - strand, within MMJJ_RS03430at 643.863 kb on - strand, within MMJJ_RS03430at 643.906 kb on - strand, within MMJJ_RS03430at 643.918 kb on - strand, within MMJJ_RS03430at 643.954 kb on + strand, within MMJJ_RS03430at 643.956 kb on + strandat 644.001 kb on - strand, within MMJJ_RS03430at 644.001 kb on - strand, within MMJJ_RS03430at 644.020 kb on - strand, within MMJJ_RS03430at 644.020 kb on - strand, within MMJJ_RS03430at 644.021 kb on + strand, within MMJJ_RS03430at 644.045 kb on + strandat 644.069 kb on - strandat 644.083 kb on + strandat 644.083 kb on + strandat 644.085 kb on - strandat 644.085 kb on - strandat 644.090 kb on + strandat 644.090 kb on + strandat 644.091 kb on - strandat 644.092 kb on + strandat 644.099 kb on + strandat 644.127 kb on - strandat 644.132 kb on + strandat 644.133 kb on - strandat 644.133 kb on - strandat 644.138 kb on + strandat 644.138 kb on + strandat 644.142 kb on - strandat 644.146 kb on - strandat 644.146 kb on - strandat 644.146 kb on - strandat 644.242 kb on - strandat 644.247 kb on - strandat 644.247 kb on - strandat 644.247 kb on - strandat 644.247 kb on - strandat 644.248 kb on + strandat 644.249 kb on - strandat 644.249 kb on - strandat 644.249 kb on - strandat 644.250 kb on + strandat 644.250 kb on + strandat 644.250 kb on + strandat 644.307 kb on - strandat 644.308 kb on + strandat 644.312 kb on + strandat 644.376 kb on - strand, within MMJJ_RS03435at 644.382 kb on + strand, within MMJJ_RS03435at 644.400 kb on + strand, within MMJJ_RS03435at 644.403 kb on + strand, within MMJJ_RS03435at 644.418 kb on + strand, within MMJJ_RS03435at 644.432 kb on + strand, within MMJJ_RS03435at 644.463 kb on - strand, within MMJJ_RS03435at 644.464 kb on + strand, within MMJJ_RS03435at 644.464 kb on + strand, within MMJJ_RS03435at 644.464 kb on + strand, within MMJJ_RS03435at 644.480 kb on - strand, within MMJJ_RS03435

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
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642,368 - MMJJ_RS03410 0.32 -0.2
642,420 - MMJJ_RS03410 0.45 -0.0
642,508 - MMJJ_RS03410 0.66 -0.6
642,540 - MMJJ_RS03410 0.73 -1.4
642,595 - MMJJ_RS03410 0.87 +2.4
642,656 + -0.4
642,734 + MMJJ_RS03415 0.18 -1.5
642,741 - MMJJ_RS03415 0.20 -0.8
642,795 + MMJJ_RS03415 0.32 +0.4
642,821 - MMJJ_RS03415 0.38 +0.6
642,821 - MMJJ_RS03415 0.38 +0.9
642,873 - MMJJ_RS03415 0.50 -1.7
642,891 - MMJJ_RS03415 0.54 -0.3
642,899 + MMJJ_RS03415 0.56 -0.7
642,899 + MMJJ_RS03415 0.56 -0.3
642,951 - MMJJ_RS03415 0.68 -0.6
642,951 - MMJJ_RS03415 0.68 +1.4
642,951 - MMJJ_RS03415 0.68 +1.0
642,957 - MMJJ_RS03415 0.69 +1.9
642,958 + MMJJ_RS03415 0.69 +0.9
642,988 - MMJJ_RS03415 0.76 +0.2
643,065 + +0.8
643,071 + -0.3
643,071 + +0.9
643,108 - +0.7
643,116 + MMJJ_RS03420 0.12 -0.4
643,116 + MMJJ_RS03420 0.12 -0.8
643,116 + MMJJ_RS03420 0.12 -0.7
643,133 - MMJJ_RS03420 0.18 -0.0
643,134 + MMJJ_RS03420 0.18 -1.5
643,134 + MMJJ_RS03420 0.18 -0.5
643,188 + MMJJ_RS03420 0.38 -1.9
643,213 - MMJJ_RS03420 0.47 +0.5
643,214 + MMJJ_RS03420 0.47 +2.3
643,214 + MMJJ_RS03420 0.47 +0.3
643,214 + MMJJ_RS03420 0.47 -0.3
643,217 - MMJJ_RS03420 0.48 -0.2
643,217 - MMJJ_RS03420 0.48 -0.0
643,218 + MMJJ_RS03420 0.49 -0.5
643,232 + MMJJ_RS03420 0.54 +1.7
643,238 - MMJJ_RS03420 0.56 +0.4
643,239 + MMJJ_RS03420 0.56 +0.6
643,279 - MMJJ_RS03420 0.71 -1.8
643,280 + MMJJ_RS03420 0.71 -0.1
643,312 - MMJJ_RS03420 0.83 +0.9
643,313 + MMJJ_RS03420 0.83 +0.3
643,313 + MMJJ_RS03420 0.83 -0.2
643,317 - MMJJ_RS03420 0.84 -0.8
643,317 - MMJJ_RS03420 0.84 +1.2
643,317 - MMJJ_RS03420 0.84 -0.4
643,317 - MMJJ_RS03420 0.84 -1.2
643,318 + MMJJ_RS03420 0.85 -0.3
643,319 - MMJJ_RS03420 0.85 -1.0
643,320 + MMJJ_RS03420 0.86 -0.2
643,320 + MMJJ_RS03420 0.86 -1.5
643,362 + -1.4
643,393 - MMJJ_RS03425 0.26 +0.5
643,395 - MMJJ_RS03425 0.28 -0.1
643,404 - MMJJ_RS03425 0.35 +0.7
643,405 + MMJJ_RS03425 0.36 +1.0
643,466 + MMJJ_RS03425 0.84 +1.6
643,591 - +1.0
643,591 - -0.8
643,591 - +1.3
643,591 - +0.4
643,592 + -0.6
643,592 + +0.3
643,592 + -1.5
643,592 + -3.2
643,661 - -1.4
643,667 + +1.4
643,682 - -0.2
643,779 + MMJJ_RS03430 0.20 +1.4
643,835 + +1.4
643,845 - MMJJ_RS03430 0.38 +0.4
643,863 - MMJJ_RS03430 0.43 -1.9
643,906 - MMJJ_RS03430 0.55 -1.9
643,918 - MMJJ_RS03430 0.58 -0.9
643,954 + MMJJ_RS03430 0.68 -0.2
643,956 + -0.6
644,001 - MMJJ_RS03430 0.81 -2.9
644,001 - MMJJ_RS03430 0.81 +1.5
644,020 - MMJJ_RS03430 0.86 -0.8
644,020 - MMJJ_RS03430 0.86 -0.2
644,021 + MMJJ_RS03430 0.86 -0.8
644,045 + +0.4
644,069 - +1.4
644,083 + +1.8
644,083 + +1.3
644,085 - +1.6
644,085 - +1.5
644,090 + -1.0
644,090 + +1.0
644,091 - +0.6
644,092 + -1.0
644,099 + -0.3
644,127 - +0.4
644,132 + +0.2
644,133 - -0.4
644,133 - -1.2
644,138 + +0.9
644,138 + -1.4
644,142 - -0.1
644,146 - +1.9
644,146 - +1.5
644,146 - -0.7
644,242 - +0.5
644,247 - +0.5
644,247 - +0.9
644,247 - +1.1
644,247 - +1.1
644,248 + +1.1
644,249 - -0.0
644,249 - +0.1
644,249 - -0.8
644,250 + +0.0
644,250 + -0.5
644,250 + -2.1
644,307 - -0.2
644,308 + +0.0
644,312 + -0.9
644,376 - MMJJ_RS03435 0.14 +0.8
644,382 + MMJJ_RS03435 0.15 -2.3
644,400 + MMJJ_RS03435 0.16 +0.6
644,403 + MMJJ_RS03435 0.16 -0.8
644,418 + MMJJ_RS03435 0.17 +1.1
644,432 + MMJJ_RS03435 0.18 -1.7
644,463 - MMJJ_RS03435 0.21 +0.6
644,464 + MMJJ_RS03435 0.21 -0.5
644,464 + MMJJ_RS03435 0.21 -0.6
644,464 + MMJJ_RS03435 0.21 +0.0
644,480 - MMJJ_RS03435 0.22 -1.9

Or see this region's nucleotide sequence