Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17770

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
3,886,765	+		LRK54_RS17760	0.37	+1.1
3,886,799	+		LRK54_RS17760	0.43	+0.4
3,886,799	+		LRK54_RS17760	0.43	+0.9
3,887,071	+		LRK54_RS17760	0.87	-1.6
3,887,072	-		LRK54_RS17760	0.87	-0.8
3,887,073	-		LRK54_RS17760	0.87	-0.2
3,887,197	+				+1.2
3,887,197	+				-0.5
3,887,198	-				+0.5
3,887,198	-				-0.8
3,887,198	-				-1.5
3,887,198	-				+0.0
3,887,249	+				-0.0
3,887,249	+				-0.2
3,887,249	+				-0.9
3,887,249	+				-0.7
3,887,249	+				+0.6
3,887,249	+				+0.1
3,887,249	+				-0.3
3,887,249	+				-0.6
3,887,249	+				+0.9
3,887,249	+				-0.5
3,887,274	+		LRK54_RS17765	0.10	+0.0
3,887,274	+		LRK54_RS17765	0.10	-1.3
3,887,274	+		LRK54_RS17765	0.10	-0.2
3,887,274	+		LRK54_RS17765	0.10	-0.9
3,887,274	+		LRK54_RS17765	0.10	-0.8
3,887,274	+		LRK54_RS17765	0.10	+0.8
3,887,274	+		LRK54_RS17765	0.10	+0.9
3,887,274	+		LRK54_RS17765	0.10	-0.1
3,887,274	+		LRK54_RS17765	0.10	+0.2
3,887,274	+		LRK54_RS17765	0.10	-0.5
3,887,274	+		LRK54_RS17765	0.10	-0.9
3,887,274	+		LRK54_RS17765	0.10	+0.9
3,887,274	+		LRK54_RS17765	0.10	+0.5
3,887,274	+		LRK54_RS17765	0.10	-0.3
3,887,274	+		LRK54_RS17765	0.10	-0.1
3,887,274	+		LRK54_RS17765	0.10	+0.1
3,887,275	-		LRK54_RS17765	0.11	+0.2
3,887,275	-		LRK54_RS17765	0.11	+1.2
3,887,275	-		LRK54_RS17765	0.11	+0.9
3,887,275	-		LRK54_RS17765	0.11	+0.5
3,887,275	-		LRK54_RS17765	0.11	+0.4
3,887,275	-		LRK54_RS17765	0.11	+1.1
3,887,275	-		LRK54_RS17765	0.11	+1.9
3,887,275	-		LRK54_RS17765	0.11	+0.8
3,887,275	-		LRK54_RS17765	0.11	-1.1
3,887,297	+		LRK54_RS17765	0.18	+0.7
3,887,297	+		LRK54_RS17765	0.18	+0.1
3,887,297	+		LRK54_RS17765	0.18	+0.9
3,887,297	+		LRK54_RS17765	0.18	+0.4
3,887,297	+		LRK54_RS17765	0.18	-0.6
3,887,297	+		LRK54_RS17765	0.18	-1.3
3,887,297	+		LRK54_RS17765	0.18	-0.9
3,887,297	+		LRK54_RS17765	0.18	-0.8
3,887,297	+		LRK54_RS17765	0.18	-0.3
3,887,297	+		LRK54_RS17765	0.18	-1.1
3,887,298	-		LRK54_RS17765	0.18	+1.3
3,887,298	-		LRK54_RS17765	0.18	-1.6
3,887,298	-		LRK54_RS17765	0.18	-0.1
3,887,298	-		LRK54_RS17765	0.18	-0.3
3,887,298	-		LRK54_RS17765	0.18	-0.6
3,887,298	-		LRK54_RS17765	0.18	-0.8
3,887,298	-		LRK54_RS17765	0.18	-0.5
3,887,298	-		LRK54_RS17765	0.18	+0.4
3,887,298	-		LRK54_RS17765	0.18	-0.5
3,887,488	+		LRK54_RS17765	0.83	-0.1
3,887,488	+		LRK54_RS17765	0.83	-1.0
3,887,488	+		LRK54_RS17765	0.83	-0.5
3,887,489	-		LRK54_RS17765	0.83	+0.6
3,887,489	-		LRK54_RS17765	0.83	+0.4
3,887,489	-		LRK54_RS17765	0.83	+0.3
3,887,489	-		LRK54_RS17765	0.83	-0.4
3,887,550	+				+1.5
3,887,565	+				+0.0
3,887,565	+				+0.5
3,887,565	+				+0.5
3,887,565	+				+0.5
3,887,565	+				-1.0
3,887,565	+				+0.3
3,887,565	+				-0.1
3,887,565	+				-0.4
3,887,565	+				+0.5
3,887,565	+				-0.3
3,887,565	+				+0.4
3,887,565	+				+0.2
3,887,565	+				+0.2
3,887,565	+				-0.9
3,887,565	+				+1.9
3,887,565	+				-0.0
3,887,565	+				+0.2
3,887,565	+				+0.4
3,887,565	+				-0.8
3,887,565	+				+1.5
3,887,565	+				-2.3
3,887,565	+				-1.4
3,887,565	+				-1.5
3,887,565	+				-0.2
3,887,566	-				+0.3
3,887,566	-				+0.8
3,887,566	-				+0.3
3,887,566	-				-0.2
3,887,566	-				+0.8
3,887,566	-				+0.3
3,887,566	-				-0.2
3,887,566	-				+0.0
3,887,566	-				-0.2
3,887,566	-				+0.1
3,887,566	-				+0.2
3,887,566	-				-2.1
3,887,566	-				+0.9
3,887,566	-				-1.9
3,887,566	-				+0.2
3,887,566	-				-1.9
3,887,566	-				+0.5
3,887,566	-				-0.9
3,887,566	-				+0.9
3,887,566	-				+0.5
3,887,566	-				+0.1
3,887,566	-				+0.9
3,887,566	-				+0.2
3,887,566	-				+0.5
3,887,566	-				+0.3
3,887,566	-				+1.8
3,887,566	-				+0.3
3,887,566	-				-0.6
3,887,566	-				-0.4
3,887,566	-				-0.3
3,887,569	+				+1.7
3,887,569	+				-0.5
3,887,569	+				+0.9
3,887,569	+				+0.3
3,887,569	+				+1.4
3,887,569	+				+0.0
3,887,569	+				+0.0
3,887,569	+				-0.5
3,887,569	+				+1.1
3,887,569	+				-0.5
3,887,569	+				-1.1
3,887,569	+				-0.8
3,887,569	+				-0.5
3,887,569	+				-0.1
3,887,569	+				-0.1
3,887,569	+				+0.9
3,887,569	+				-0.2
3,887,569	+				-0.3
3,887,569	+				-0.6
3,887,569	+				-1.1
3,887,569	+				-0.1
3,887,569	+				-0.9
3,887,569	+				-0.6
3,887,569	+				-0.5
3,887,569	+				-1.1
3,887,569	+				+0.4
3,887,569	+				-0.5
3,887,570	-				-0.2
3,887,570	-				-0.1
3,887,570	-				+0.1
3,887,570	-				-0.1
3,887,570	-				+0.4
3,887,570	-				+0.1
3,887,570	-				-0.1
3,887,570	-				+1.5
3,887,570	-				-0.8
3,887,570	-				+0.6
3,887,570	-				+1.1
3,887,570	-				+0.7
3,887,570	-				+0.8
3,887,570	-				+0.7
3,887,570	-				-0.6
3,887,570	-				-0.5
3,887,570	-				-0.1
3,887,570	-				-1.5
3,887,570	-				-0.9
3,887,570	-				-0.5
3,887,570	-				-1.9
3,887,591	+				+0.5
3,887,591	+				+1.5
3,887,591	+				-0.5
3,887,592	-				-0.6
3,887,592	-				+1.3
3,887,608	+				-0.3
3,887,608	+				-1.7
3,887,608	+				+0.0
3,887,609	-				-0.5
3,887,609	-				-1.1
3,887,609	-				-1.9
3,887,704	+		LRK54_RS17770	0.20	+1.9
3,887,704	+		LRK54_RS17770	0.20	+1.5
3,887,704	+		LRK54_RS17770	0.20	+0.9
3,887,704	+		LRK54_RS17770	0.20	+0.3
3,887,704	+		LRK54_RS17770	0.20	+0.1
3,887,704	+		LRK54_RS17770	0.20	-0.5
3,887,704	+		LRK54_RS17770	0.20	+0.0
3,887,704	+		LRK54_RS17770	0.20	+1.5
3,887,704	+		LRK54_RS17770	0.20	-0.1
3,887,704	+		LRK54_RS17770	0.20	-0.6
3,887,705	-		LRK54_RS17770	0.20	+0.5
3,887,705	-		LRK54_RS17770	0.20	-2.0
3,887,820	+		LRK54_RS17770	0.44	-0.6
3,887,820	+		LRK54_RS17770	0.44	+0.8
3,887,820	+		LRK54_RS17770	0.44	-0.3
3,887,820	+		LRK54_RS17770	0.44	-1.1
3,887,821	-		LRK54_RS17770	0.45	+1.6
3,887,827	-		LRK54_RS17770	0.46	+0.3
3,887,899	+		LRK54_RS17770	0.61	+0.5
3,887,900	-		LRK54_RS17770	0.61	+0.3
3,887,900	-		LRK54_RS17770	0.61	-0.4
3,888,043	+				+0.3
3,888,043	+				-0.1
3,888,043	+				-0.1
3,888,043	+				-2.1
3,888,043	+				-1.9
3,888,043	+				-1.7
3,888,043	+				-1.2
3,888,043	+				-0.6
3,888,044	-				-0.3
3,888,044	-				-0.3
3,888,044	-				-0.1
3,888,044	-				-0.1
3,888,044	-				-0.9
3,888,055	+				-0.5
3,888,055	+				+0.3
3,888,055	+				+0.5
3,888,055	+				+1.5
3,888,056	-				+1.2
3,888,056	-				-0.2
3,888,074	+				-0.5
3,888,074	+				-0.8
3,888,074	+				-0.4
3,888,074	+				-0.9
3,888,074	+				+0.9
3,888,074	+				+1.4
3,888,074	+				+0.1
3,888,074	+				+0.4
3,888,074	+				-0.1
3,888,074	+				+0.5
3,888,074	+				-0.8
3,888,074	+				+1.9
3,888,074	+				-0.3
3,888,075	-				+0.1
3,888,075	-				-0.5
3,888,075	-				+1.0
3,888,075	-				-1.4
3,888,075	-				+0.1
3,888,075	-				+0.5
3,888,075	-				-0.6
3,888,075	-				+0.5
3,888,077	-				-1.2
3,888,077	-				-0.1
3,888,099	+				-2.5
3,888,099	+				+0.5
3,888,099	+				+0.1
3,888,100	-				-0.5
3,888,115	+				+0.6
3,888,116	-				+1.2