Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17355

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
3,791,300	+				+0.8
3,791,300	+				+0.4
3,791,300	+				+0.8
3,791,300	+				+0.1
3,791,300	+				-0.9
3,791,300	+				-0.3
3,791,300	+				+1.3
3,791,300	+				+0.8
3,791,300	+				+0.9
3,791,300	+				+0.0
3,791,300	+				+1.0
3,791,300	+				+0.5
3,791,300	+				+0.4
3,791,300	+				-0.2
3,791,300	+				-1.0
3,791,300	+				+0.2
3,791,300	+				+0.4
3,791,300	+				+0.3
3,791,300	+				-0.2
3,791,300	+				-0.1
3,791,300	+				-0.9
3,791,301	-				-0.2
3,791,301	-				-0.7
3,791,301	-				-0.3
3,791,301	-				+0.9
3,791,301	-				-1.7
3,791,301	-				-0.8
3,791,301	-				-1.0
3,791,301	-				+0.9
3,791,301	-				-0.3
3,791,301	-				-0.3
3,791,301	-				-0.9
3,791,301	-				-0.8
3,791,301	-				+0.6
3,791,301	-				-0.5
3,791,301	-				+1.9
3,791,301	-				+0.4
3,791,301	-				-0.7
3,791,301	-				+0.2
3,791,301	-				+1.1
3,791,301	-				-0.6
3,791,301	-				+0.4
3,791,337	-		LRK54_RS17345	0.21	+0.2
3,791,393	+		LRK54_RS17345	0.51	+0.3
3,791,426	+		LRK54_RS17345	0.69	-0.6
3,791,427	-		LRK54_RS17345	0.70	+0.6
3,791,427	-		LRK54_RS17345	0.70	-0.6
3,791,444	+		LRK54_RS17345	0.79	+1.0
3,791,444	+		LRK54_RS17345	0.79	+0.2
3,791,444	+		LRK54_RS17345	0.79	-0.5
3,791,444	+		LRK54_RS17345	0.79	+0.2
3,791,444	+		LRK54_RS17345	0.79	-0.5
3,791,444	+		LRK54_RS17345	0.79	+1.3
3,791,444	+		LRK54_RS17345	0.79	+0.0
3,791,444	+		LRK54_RS17345	0.79	-0.7
3,791,444	+		LRK54_RS17345	0.79	+0.7
3,791,444	+		LRK54_RS17345	0.79	-0.1
3,791,444	+		LRK54_RS17345	0.79	-0.1
3,791,444	+		LRK54_RS17345	0.79	+1.5
3,791,444	+		LRK54_RS17345	0.79	-0.6
3,791,445	-		LRK54_RS17345	0.80	+0.3
3,791,445	-		LRK54_RS17345	0.80	-1.4
3,791,445	-		LRK54_RS17345	0.80	-2.1
3,791,445	-		LRK54_RS17345	0.80	+0.4
3,791,445	-		LRK54_RS17345	0.80	-0.6
3,791,445	-		LRK54_RS17345	0.80	-0.1
3,791,445	-		LRK54_RS17345	0.80	+1.3
3,791,455	+		LRK54_RS17345	0.85	-0.0
3,791,455	+		LRK54_RS17345	0.85	-0.3
3,791,455	+		LRK54_RS17345	0.85	+1.5
3,791,455	+		LRK54_RS17345	0.85	-0.1
3,791,455	+		LRK54_RS17345	0.85	+0.7
3,791,455	+		LRK54_RS17345	0.85	-0.5
3,791,456	-		LRK54_RS17345	0.86	+0.6
3,791,456	-		LRK54_RS17345	0.86	+0.4
3,791,456	-		LRK54_RS17345	0.86	-0.1
3,791,456	-		LRK54_RS17345	0.86	+0.8
3,791,456	-		LRK54_RS17345	0.86	+1.2
3,791,456	-		LRK54_RS17345	0.86	-0.5
3,791,456	-		LRK54_RS17345	0.86	-0.6
3,791,456	-		LRK54_RS17345	0.86	+0.5
3,791,456	-		LRK54_RS17345	0.86	-1.6
3,791,456	-		LRK54_RS17345	0.86	+0.1
3,791,456	-		LRK54_RS17345	0.86	-0.2
3,791,456	-		LRK54_RS17345	0.86	+0.8
3,791,768	+				-1.1
3,791,768	+				+0.3
3,791,768	+				+0.8
3,791,768	+				+1.4
3,791,769	-				+0.4
3,791,769	-				-1.8
3,791,769	-				-1.3
3,791,769	-				-0.6
3,791,960	+				+0.2
3,792,052	+				+0.8
3,792,052	+				+0.4
3,792,052	+				-2.0
3,792,052	+				+0.6
3,792,052	+				-1.4
3,792,052	+				-0.0
3,792,052	+				-0.1
3,792,052	+				-1.7
3,792,053	-				-0.2
3,792,053	-				+0.2
3,792,053	-				-0.5
3,792,053	-				-0.1
3,792,053	-				-1.2
3,792,053	-				-0.6
3,792,053	-				+0.2
3,792,053	-				-0.9
3,792,053	-				-0.5
3,792,053	-				-0.8
3,792,053	-				-1.2
3,792,340	+		LRK54_RS17355	0.23	+0.6
3,792,340	+		LRK54_RS17355	0.23	+1.8
3,792,340	+		LRK54_RS17355	0.23	+0.8
3,792,340	+		LRK54_RS17355	0.23	-0.5
3,792,340	+		LRK54_RS17355	0.23	-0.1
3,792,340	+		LRK54_RS17355	0.23	-0.8
3,792,340	+		LRK54_RS17355	0.23	+0.7
3,792,340	+		LRK54_RS17355	0.23	+0.8
3,792,340	+		LRK54_RS17355	0.23	+1.0
3,792,340	+		LRK54_RS17355	0.23	-0.9
3,792,340	+		LRK54_RS17355	0.23	+0.5
3,792,340	+		LRK54_RS17355	0.23	+0.4
3,792,341	-		LRK54_RS17355	0.23	+0.7
3,792,341	-		LRK54_RS17355	0.23	-0.8
3,792,341	-		LRK54_RS17355	0.23	-0.1
3,792,341	-		LRK54_RS17355	0.23	+1.4
3,792,341	-		LRK54_RS17355	0.23	+0.8
3,792,341	-		LRK54_RS17355	0.23	+0.6
3,792,341	-		LRK54_RS17355	0.23	-0.6
3,792,341	-		LRK54_RS17355	0.23	-0.0
3,792,341	-		LRK54_RS17355	0.23	+0.1
3,792,379	+		LRK54_RS17355	0.32	-0.5
3,792,379	+		LRK54_RS17355	0.32	-0.5
3,792,379	+		LRK54_RS17355	0.32	-0.6
3,792,379	+		LRK54_RS17355	0.32	+0.4
3,792,379	+		LRK54_RS17355	0.32	-0.9
3,792,379	+		LRK54_RS17355	0.32	+0.9
3,792,379	+		LRK54_RS17355	0.32	+1.2
3,792,380	-		LRK54_RS17355	0.32	-0.3
3,792,380	-		LRK54_RS17355	0.32	-0.1
3,792,380	-		LRK54_RS17355	0.32	+0.3
3,792,380	-		LRK54_RS17355	0.32	+1.9
3,792,380	-		LRK54_RS17355	0.32	-0.8
3,792,380	-		LRK54_RS17355	0.32	+0.2
3,792,380	-		LRK54_RS17355	0.32	+0.3
3,792,380	-		LRK54_RS17355	0.32	-0.5
3,792,380	-		LRK54_RS17355	0.32	-0.9
3,792,380	-		LRK54_RS17355	0.32	-0.9
3,792,380	-		LRK54_RS17355	0.32	+0.6
3,792,380	-		LRK54_RS17355	0.32	-0.6
3,792,380	-		LRK54_RS17355	0.32	+0.0
3,792,380	-		LRK54_RS17355	0.32	-0.7
3,792,380	-		LRK54_RS17355	0.32	+1.5
3,792,380	-		LRK54_RS17355	0.32	-0.1
3,792,380	-		LRK54_RS17355	0.32	+0.8
3,792,380	-		LRK54_RS17355	0.32	-0.6
3,792,380	-		LRK54_RS17355	0.32	+0.3
3,792,380	-		LRK54_RS17355	0.32	-1.9
3,792,415	+		LRK54_RS17355	0.40	+0.7
3,792,415	+		LRK54_RS17355	0.40	-0.9
3,792,415	+		LRK54_RS17355	0.40	-0.4
3,792,416	-		LRK54_RS17355	0.40	+1.1
3,792,416	-		LRK54_RS17355	0.40	-0.2
3,792,416	-		LRK54_RS17355	0.40	+0.3
3,792,416	-		LRK54_RS17355	0.40	+0.5
3,792,416	-		LRK54_RS17355	0.40	+0.5
3,792,448	+		LRK54_RS17355	0.47	-1.7
3,792,448	+		LRK54_RS17355	0.47	-0.4
3,792,449	-		LRK54_RS17355	0.47	+0.2
3,792,449	-		LRK54_RS17355	0.47	+0.1
3,792,449	-		LRK54_RS17355	0.47	-0.6
3,792,505	+		LRK54_RS17355	0.60	+0.6
3,792,505	+		LRK54_RS17355	0.60	-0.1
3,792,505	+		LRK54_RS17355	0.60	-1.3
3,792,505	+		LRK54_RS17355	0.60	+0.4
3,792,505	+		LRK54_RS17355	0.60	+0.4
3,792,505	+		LRK54_RS17355	0.60	+0.2
3,792,505	+		LRK54_RS17355	0.60	+0.8
3,792,505	+		LRK54_RS17355	0.60	-0.1
3,792,505	+		LRK54_RS17355	0.60	-2.3
3,792,505	+		LRK54_RS17355	0.60	+1.3
3,792,506	-		LRK54_RS17355	0.61	+0.4
3,792,506	-		LRK54_RS17355	0.61	+0.1
3,792,506	-		LRK54_RS17355	0.61	+1.5
3,792,506	-		LRK54_RS17355	0.61	+1.5
3,792,506	-		LRK54_RS17355	0.61	-0.5
3,792,506	-		LRK54_RS17355	0.61	+0.4
3,792,506	-		LRK54_RS17355	0.61	-0.0
3,792,506	-		LRK54_RS17355	0.61	+0.8
3,792,506	-		LRK54_RS17355	0.61	+0.9
3,792,506	-		LRK54_RS17355	0.61	-0.7
3,792,506	-		LRK54_RS17355	0.61	-0.1
3,792,506	-		LRK54_RS17355	0.61	+0.3
3,792,506	-		LRK54_RS17355	0.61	+0.5
3,792,506	-		LRK54_RS17355	0.61	+0.7
3,792,506	-		LRK54_RS17355	0.61	-0.4
3,792,506	-		LRK54_RS17355	0.61	-1.2
3,792,506	-		LRK54_RS17355	0.61	-0.4
3,792,506	-		LRK54_RS17355	0.61	+0.7
3,792,506	-		LRK54_RS17355	0.61	-0.3
3,792,506	-		LRK54_RS17355	0.61	+0.5
3,792,506	-		LRK54_RS17355	0.61	+0.5
3,792,668	+				+2.2
3,792,668	+				+0.0
3,792,668	+				+0.7
3,792,668	+				+0.1
3,792,668	+				+0.3
3,792,668	+				-0.6
3,792,669	-				-0.6
3,792,669	-				+0.5
3,792,669	-				-0.2
3,792,669	-				-0.8
3,792,669	-				-0.5
3,792,669	-				-1.0
3,792,669	-				-0.3
3,792,669	-				-1.1
3,792,669	-				+0.9
3,792,669	-				+1.5
3,792,669	-				+0.5
3,792,781	+				-0.1
3,792,781	+				-0.8
3,792,781	+				-0.2
3,792,781	+				+0.5
3,792,781	+				+0.7
3,792,781	+				-0.5
3,792,781	+				-0.2
3,792,782	-				+0.1
3,792,782	-				+0.1
3,792,782	-				+1.5
3,792,782	-				+0.3
3,792,782	-				+0.4
3,792,782	-				+2.2
3,792,782	-				+1.4
3,792,946	+		LRK54_RS17360	0.70	+0.5
3,793,027	+		LRK54_RS17365	0.11	+0.1
3,793,027	+		LRK54_RS17365	0.11	-0.4
3,793,027	+		LRK54_RS17365	0.11	-0.4
3,793,027	+		LRK54_RS17365	0.11	+1.2
3,793,027	+		LRK54_RS17365	0.11	-0.8
3,793,033	+		LRK54_RS17365	0.15	+0.1
3,793,034	-		LRK54_RS17365	0.15	-0.7
3,793,034	-		LRK54_RS17365	0.15	+0.4
3,793,062	+		LRK54_RS17365	0.33	+0.4
3,793,062	+		LRK54_RS17365	0.33	-0.1
3,793,062	+		LRK54_RS17365	0.33	-0.6
3,793,062	+		LRK54_RS17365	0.33	+0.5
3,793,062	+		LRK54_RS17365	0.33	-0.1
3,793,062	+		LRK54_RS17365	0.33	+0.5
3,793,062	+		LRK54_RS17365	0.33	-0.1
3,793,062	+		LRK54_RS17365	0.33	-1.4
3,793,062	+		LRK54_RS17365	0.33	+1.5
3,793,062	+		LRK54_RS17365	0.33	-0.2
3,793,062	+		LRK54_RS17365	0.33	-0.6
3,793,062	+		LRK54_RS17365	0.33	+0.7
3,793,063	-		LRK54_RS17365	0.34	-0.9
3,793,063	-		LRK54_RS17365	0.34	-0.1
3,793,063	-		LRK54_RS17365	0.34	-0.8
3,793,063	-		LRK54_RS17365	0.34	-0.5
3,793,063	-		LRK54_RS17365	0.34	-0.8
3,793,140	+		LRK54_RS17365	0.83	-0.6
3,793,140	+		LRK54_RS17365	0.83	+1.4
3,793,140	+		LRK54_RS17365	0.83	-0.1
3,793,140	+		LRK54_RS17365	0.83	+0.8
3,793,140	+		LRK54_RS17365	0.83	+0.1
3,793,140	+		LRK54_RS17365	0.83	+1.4
3,793,140	+		LRK54_RS17365	0.83	-0.3
3,793,140	+		LRK54_RS17365	0.83	-1.4
3,793,140	+		LRK54_RS17365	0.83	+0.4
3,793,140	+		LRK54_RS17365	0.83	+0.9
3,793,140	+		LRK54_RS17365	0.83	+0.3
3,793,140	+		LRK54_RS17365	0.83	-0.2
3,793,140	+		LRK54_RS17365	0.83	+1.5
3,793,141	-		LRK54_RS17365	0.84	+1.0
3,793,141	-		LRK54_RS17365	0.84	-1.2
3,793,141	-		LRK54_RS17365	0.84	-0.3
3,793,141	-		LRK54_RS17365	0.84	-0.1
3,793,141	-		LRK54_RS17365	0.84	-1.1
3,793,141	-		LRK54_RS17365	0.84	-0.5
3,793,141	-		LRK54_RS17365	0.84	+0.1
3,793,141	-		LRK54_RS17365	0.84	+0.2
3,793,141	-		LRK54_RS17365	0.84	+0.7
3,793,142	+		LRK54_RS17365	0.85	+0.1
3,793,142	+		LRK54_RS17365	0.85	+0.5
3,793,142	+		LRK54_RS17365	0.85	-1.2
3,793,143	-		LRK54_RS17365	0.85	+0.5
3,793,398	+		LRK54_RS17370	0.47	+0.1
3,793,399	-		LRK54_RS17370	0.47	-1.1
3,793,399	-		LRK54_RS17370	0.47	+0.5
3,793,465	+		LRK54_RS17370	0.71	+0.1
3,793,465	+		LRK54_RS17370	0.71	+0.1
3,793,466	-		LRK54_RS17370	0.71	+0.5
3,793,641	+				-0.5
3,793,641	+				-1.4
3,793,641	+				-1.3
3,793,641	+				+0.5
3,793,641	+				+1.3
3,793,641	+				+0.0
3,793,641	+				-1.2
3,793,641	+				+0.1
3,793,641	+				+0.2
3,793,641	+				-0.3
3,793,641	+				+0.2
3,793,641	+				+0.8
3,793,641	+				+1.1
3,793,641	+				+0.2
3,793,641	+				+0.2
3,793,641	+				-0.1
3,793,641	+				-0.5
3,793,641	+				-0.6
3,793,641	+				+0.5
3,793,641	+				-0.5
3,793,641	+				+0.6
3,793,642	-				-0.3
3,793,642	-				-0.4
3,793,642	-				+0.4
3,793,642	-				+2.2
3,793,642	-				+0.3
3,793,642	-				+0.4
3,793,642	-				-0.5
3,793,642	-				-0.7
3,793,642	-				+0.2
3,793,642	-				+0.2
3,793,642	-				-0.5
3,793,642	-				+0.1
3,793,642	-				+0.9
3,793,642	-				-1.2
3,793,642	-				-0.0
3,793,642	-				+0.1
3,793,642	-				-0.3
3,793,645	+				-0.1
3,793,645	+				+0.1
3,793,645	+				+0.5
3,793,645	+				+0.3
3,793,645	+				+1.5
3,793,645	+				-1.1
3,793,645	+				+0.5
3,793,645	+				-0.3
3,793,645	+				-0.2
3,793,645	+				+0.3
3,793,645	+				-1.4
3,793,645	+				-0.2
3,793,645	+				-0.7
3,793,645	+				-0.6
3,793,645	+				-0.9
3,793,645	+				+0.9
3,793,645	+				-1.8
3,793,645	+				+0.2
3,793,645	+				-0.3
3,793,645	+				+0.2
3,793,645	+				-1.0
3,793,645	+				+0.6
3,793,645	+				-0.5
3,793,646	-				+0.9
3,793,646	-				-1.2
3,793,646	-				+0.2
3,793,646	-				+0.9
3,793,646	-				-0.5
3,793,646	-				+0.5
3,793,646	-				+0.3
3,793,646	-				-1.2
3,793,646	-				+2.2
3,793,646	-				+1.1
3,793,646	-				+0.1
3,793,646	-				-0.3
3,793,646	-				+0.2
3,793,646	-				-0.8
3,793,646	-				+4.5
3,793,646	-				-0.0
3,793,646	-				-0.1
3,793,646	-				+1.8
3,793,646	-				-2.0
3,793,646	-				+0.1
3,793,665	+				-0.2