Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16760

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
3,672,101	+		LRK54_RS16755	0.57	-1.9
3,672,101	+		LRK54_RS16755	0.57	-1.5
3,672,102	-		LRK54_RS16755	0.57	-0.1
3,672,102	-		LRK54_RS16755	0.57	-0.5
3,672,102	-		LRK54_RS16755	0.57	-0.7
3,672,102	-		LRK54_RS16755	0.57	-0.1
3,672,201	+		LRK54_RS16755	0.62	+0.5
3,672,201	+		LRK54_RS16755	0.62	+0.5
3,672,201	+		LRK54_RS16755	0.62	-0.1
3,672,202	-		LRK54_RS16755	0.62	+0.5
3,672,202	-		LRK54_RS16755	0.62	-0.9
3,672,202	-		LRK54_RS16755	0.62	+0.1
3,672,202	-		LRK54_RS16755	0.62	-1.0
3,672,202	-		LRK54_RS16755	0.62	-0.4
3,672,202	-		LRK54_RS16755	0.62	-0.1
3,672,237	+		LRK54_RS16755	0.64	-0.5
3,672,237	+		LRK54_RS16755	0.64	-0.9
3,672,237	+		LRK54_RS16755	0.64	-0.1
3,672,382	+		LRK54_RS16755	0.72	+0.1
3,672,382	+		LRK54_RS16755	0.72	+1.5
3,672,640	+		LRK54_RS16755	0.85	-0.4
3,672,640	+		LRK54_RS16755	0.85	-0.4
3,672,640	+		LRK54_RS16755	0.85	+0.1
3,672,641	-		LRK54_RS16755	0.85	-0.5
3,672,747	+				+0.1
3,672,747	+				-0.4
3,672,747	+				+0.1
3,672,747	+				-0.7
3,672,747	+				+0.1
3,672,747	+				-0.4
3,672,747	+				-0.5
3,672,747	+				+0.5
3,672,747	+				-0.4
3,672,747	+				-0.9
3,672,747	+				+0.1
3,672,747	+				+0.5
3,672,747	+				-0.9
3,672,748	-				-0.4
3,672,748	-				+1.5
3,672,748	-				-1.5
3,672,748	-				-0.9
3,672,748	-				+0.1
3,672,748	-				-1.0
3,672,748	-				-1.7
3,672,849	+				-0.1
3,672,850	-				-1.3
3,672,921	+				+0.3
3,672,921	+				-0.8
3,672,921	+				-0.2
3,672,921	+				+0.3
3,672,921	+				-0.3
3,672,921	+				-0.3
3,672,921	+				-0.4
3,672,921	+				-0.5
3,672,922	-				+0.3
3,672,922	-				-1.4
3,672,922	-				-1.6
3,672,922	-				-0.9
3,672,922	-				-0.9
3,672,922	-				+0.3
3,672,922	-				-1.1
3,673,087	+				-0.5
3,673,087	+				-0.1
3,673,087	+				-0.1
3,673,087	+				-0.3
3,673,087	+				+0.0
3,673,087	+				+0.7
3,673,087	+				+0.7
3,673,087	+				+0.3
3,673,088	-				+0.7
3,673,088	-				+0.1
3,673,088	-				+0.5
3,673,088	-				+0.3
3,673,088	-				+0.0
3,673,180	+				+3.5
3,673,180	+				+1.5
3,673,180	+				+0.5
3,673,180	+				-0.0
3,673,180	+				+0.4
3,673,180	+				+0.1
3,673,180	+				-0.1
3,673,180	+				-0.4
3,673,181	-				-0.8
3,673,181	-				+1.0
3,673,181	-				+0.5
3,673,181	-				-0.0
3,673,181	-				-1.0
3,673,181	-				+1.1
3,673,375	+		LRK54_RS16760	0.29	-0.9
3,673,375	+		LRK54_RS16760	0.29	+0.7
3,673,376	-		LRK54_RS16760	0.29	-1.9
3,673,376	-		LRK54_RS16760	0.29	+2.5
3,673,376	-		LRK54_RS16760	0.29	-1.1
3,673,376	-		LRK54_RS16760	0.29	+2.5
3,673,680	+		LRK54_RS16760	0.60	+1.6
3,673,680	+		LRK54_RS16760	0.60	-0.9
3,673,680	+		LRK54_RS16760	0.60	-1.0
3,673,680	+		LRK54_RS16760	0.60	+0.8
3,673,702	+		LRK54_RS16760	0.62	-0.0
3,673,702	+		LRK54_RS16760	0.62	+0.4
3,673,702	+		LRK54_RS16760	0.62	-0.9
3,673,702	+		LRK54_RS16760	0.62	+0.3
3,673,702	+		LRK54_RS16760	0.62	+0.9
3,673,702	+		LRK54_RS16760	0.62	-0.9
3,673,702	+		LRK54_RS16760	0.62	-0.7
3,673,703	-		LRK54_RS16760	0.62	+0.3
3,673,703	-		LRK54_RS16760	0.62	+0.5
3,673,703	-		LRK54_RS16760	0.62	+0.3
3,673,703	-		LRK54_RS16760	0.62	+0.9
3,673,703	-		LRK54_RS16760	0.62	+1.2
3,673,703	-		LRK54_RS16760	0.62	-1.3
3,673,703	-		LRK54_RS16760	0.62	+1.2
3,673,703	-		LRK54_RS16760	0.62	+0.1
3,673,708	+		LRK54_RS16760	0.62	+0.1
3,673,708	+		LRK54_RS16760	0.62	-0.1
3,673,708	+		LRK54_RS16760	0.62	-0.1
3,673,709	-		LRK54_RS16760	0.63	+0.5
3,673,709	-		LRK54_RS16760	0.63	-0.3
3,673,709	-		LRK54_RS16760	0.63	+0.2
3,673,709	-		LRK54_RS16760	0.63	+0.5
3,673,709	-		LRK54_RS16760	0.63	-0.2
3,673,709	-		LRK54_RS16760	0.63	-0.3
3,673,709	-		LRK54_RS16760	0.63	+1.1
3,673,744	+		LRK54_RS16760	0.66	+0.4
3,673,744	+		LRK54_RS16760	0.66	+1.1
3,673,744	+		LRK54_RS16760	0.66	-0.2
3,673,744	+		LRK54_RS16760	0.66	+0.5
3,673,745	-		LRK54_RS16760	0.66	-0.1
3,673,785	+		LRK54_RS16760	0.70	-0.3
3,673,786	-		LRK54_RS16760	0.70	-0.4
3,673,786	-		LRK54_RS16760	0.70	+0.0
3,673,786	-		LRK54_RS16760	0.70	+2.0
3,673,786	-		LRK54_RS16760	0.70	+0.4
3,673,804	+		LRK54_RS16760	0.72	+0.8
3,673,804	+		LRK54_RS16760	0.72	-0.9
3,673,804	+		LRK54_RS16760	0.72	+0.2
3,673,804	+		LRK54_RS16760	0.72	-0.1
3,673,804	+		LRK54_RS16760	0.72	+1.3
3,673,805	-		LRK54_RS16760	0.72	-1.7
3,673,805	-		LRK54_RS16760	0.72	+0.8
3,673,949	-		LRK54_RS16760	0.87	+0.7
3,673,949	-		LRK54_RS16760	0.87	+0.3
3,673,949	-		LRK54_RS16760	0.87	-0.9
3,673,972	+		LRK54_RS16760	0.89	+0.5
3,673,972	+		LRK54_RS16760	0.89	-0.9
3,673,972	+		LRK54_RS16760	0.89	-0.3
3,673,972	+		LRK54_RS16760	0.89	-1.4
3,673,972	+		LRK54_RS16760	0.89	+0.1
3,673,972	+		LRK54_RS16760	0.89	+0.1
3,673,972	+		LRK54_RS16760	0.89	+0.6
3,673,972	+		LRK54_RS16760	0.89	-0.2
3,673,972	+		LRK54_RS16760	0.89	+0.5
3,673,972	+		LRK54_RS16760	0.89	-0.1
3,673,973	-		LRK54_RS16760	0.89	+0.8
3,673,973	-		LRK54_RS16760	0.89	+0.2
3,673,973	-		LRK54_RS16760	0.89	+0.2
3,673,973	-		LRK54_RS16760	0.89	-0.7
3,673,973	-		LRK54_RS16760	0.89	+0.5
3,673,973	-		LRK54_RS16760	0.89	+1.0
3,673,973	-		LRK54_RS16760	0.89	+1.2
3,673,973	-		LRK54_RS16760	0.89	+0.1
3,673,973	-		LRK54_RS16760	0.89	+0.4
3,673,973	-		LRK54_RS16760	0.89	+0.9
3,673,973	-		LRK54_RS16760	0.89	+0.2
3,673,973	-		LRK54_RS16760	0.89	+0.7
3,673,973	-		LRK54_RS16760	0.89	+0.6
3,673,973	-		LRK54_RS16760	0.89	-0.9
3,673,973	-		LRK54_RS16760	0.89	-0.0
3,673,973	-		LRK54_RS16760	0.89	+0.1
3,674,032	+				+0.7
3,674,032	+				+0.8
3,674,032	+				-0.4
3,674,032	+				-0.0
3,674,032	+				-0.1
3,674,032	+				+1.7
3,674,032	+				-1.0
3,674,032	+				-0.9
3,674,032	+				+0.4
3,674,032	+				-0.5
3,674,033	-				+0.5
3,674,033	-				+0.5
3,674,033	-				+1.0
3,674,033	-				+0.3
3,674,033	-				+0.6
3,674,033	-				+0.3
3,674,033	-				-1.4
3,674,260	-				+0.0
3,674,260	-				+0.0
3,674,260	-				-0.5
3,674,260	-				+0.3
3,674,278	+				+0.5
3,674,278	+				-0.7
3,674,279	-				-0.6
3,674,279	-				-0.1
3,674,279	-				-2.8
3,674,315	+				-0.3
3,674,316	-				+1.1
3,674,316	-				-0.4
3,674,433	-		LRK54_RS16765	0.19	+0.0
3,674,547	+		LRK54_RS16765	0.34	-0.5
3,674,547	+		LRK54_RS16765	0.34	-0.8
3,674,547	+		LRK54_RS16765	0.34	-0.4
3,674,547	+		LRK54_RS16765	0.34	+0.1
3,674,547	+		LRK54_RS16765	0.34	+0.3
3,674,547	+		LRK54_RS16765	0.34	+0.3
3,674,547	+		LRK54_RS16765	0.34	-0.2
3,674,547	+		LRK54_RS16765	0.34	+1.0
3,674,548	-		LRK54_RS16765	0.34	+0.1
3,674,548	-		LRK54_RS16765	0.34	+2.2
3,674,548	-		LRK54_RS16765	0.34	-0.8
3,674,548	-		LRK54_RS16765	0.34	+0.1
3,674,548	-		LRK54_RS16765	0.34	+0.3
3,674,548	-		LRK54_RS16765	0.34	+0.1
3,674,548	-		LRK54_RS16765	0.34	+0.3
3,674,548	-		LRK54_RS16765	0.34	+0.6
3,674,548	-		LRK54_RS16765	0.34	+0.9
3,674,548	-		LRK54_RS16765	0.34	+0.0
3,674,548	-		LRK54_RS16765	0.34	+1.1
3,674,548	-		LRK54_RS16765	0.34	-0.9
3,674,548	-		LRK54_RS16765	0.34	+0.0
3,674,548	-		LRK54_RS16765	0.34	-2.0
3,674,564	+		LRK54_RS16765	0.36	-0.3
3,674,564	+		LRK54_RS16765	0.36	+0.2
3,674,564	+		LRK54_RS16765	0.36	+0.9
3,674,564	+		LRK54_RS16765	0.36	-1.2
3,674,564	+		LRK54_RS16765	0.36	+0.7
3,674,564	+		LRK54_RS16765	0.36	+0.8
3,674,564	+		LRK54_RS16765	0.36	+0.5
3,674,564	+		LRK54_RS16765	0.36	+2.1
3,674,564	+		LRK54_RS16765	0.36	+2.1
3,674,565	-		LRK54_RS16765	0.37	+0.6
3,674,565	-		LRK54_RS16765	0.37	-0.1
3,674,565	-		LRK54_RS16765	0.37	-0.1
3,674,565	-		LRK54_RS16765	0.37	+0.9
3,674,565	-		LRK54_RS16765	0.37	+0.7
3,674,565	-		LRK54_RS16765	0.37	-0.5
3,674,665	+		LRK54_RS16765	0.50	+1.4
3,674,666	-		LRK54_RS16765	0.50	-2.9
3,674,666	-		LRK54_RS16765	0.50	+0.2
3,674,666	-		LRK54_RS16765	0.50	+0.6
3,674,666	-		LRK54_RS16765	0.50	-0.0
3,674,666	-		LRK54_RS16765	0.50	-0.3
3,674,697	+		LRK54_RS16765	0.54	-1.5
3,674,697	+		LRK54_RS16765	0.54	+0.7
3,674,697	+		LRK54_RS16765	0.54	-1.3
3,674,697	+		LRK54_RS16765	0.54	-0.5
3,674,697	+		LRK54_RS16765	0.54	+0.1
3,674,697	+		LRK54_RS16765	0.54	-0.1
3,674,697	+		LRK54_RS16765	0.54	-0.9
3,674,697	+		LRK54_RS16765	0.54	-0.2
3,674,698	-		LRK54_RS16765	0.54	+1.3
3,674,698	-		LRK54_RS16765	0.54	+0.4
3,674,698	-		LRK54_RS16765	0.54	+2.5
3,674,698	-		LRK54_RS16765	0.54	+0.0
3,674,698	-		LRK54_RS16765	0.54	-1.9
3,674,698	-		LRK54_RS16765	0.54	+0.4
3,674,698	-		LRK54_RS16765	0.54	-0.7
3,674,837	+		LRK54_RS16765	0.72	+0.9
3,674,837	+		LRK54_RS16765	0.72	-0.0
3,674,837	+		LRK54_RS16765	0.72	-0.5
3,674,837	+		LRK54_RS16765	0.72	+0.0
3,674,837	+		LRK54_RS16765	0.72	+0.1
3,674,837	+		LRK54_RS16765	0.72	+0.1
3,674,838	-		LRK54_RS16765	0.72	-0.3
3,675,012	+				-0.3
3,675,012	+				+0.2
3,675,012	+				+0.1
3,675,012	+				-0.4
3,675,012	+				+1.5
3,675,012	+				-0.4
3,675,012	+				+0.1
3,675,012	+				+0.5
3,675,012	+				+0.4
3,675,012	+				+0.8
3,675,012	+				+0.3
3,675,012	+				+0.1
3,675,012	+				+0.4
3,675,012	+				+0.7
3,675,012	+				-0.5
3,675,012	+				-1.3
3,675,012	+				-0.6
3,675,012	+				+0.4
3,675,012	+				+1.2
3,675,012	+				+0.4
3,675,012	+				+3.5
3,675,012	+				-0.3
3,675,012	+				+0.1
3,675,012	+				-1.0
3,675,012	+				-0.3
3,675,012	+				-0.9
3,675,012	+				-0.4
3,675,012	+				-0.7
3,675,012	+				-1.9
3,675,012	+				-0.1
3,675,012	+				-1.6
3,675,012	+				-0.3
3,675,012	+				-0.7
3,675,012	+				+1.0
3,675,012	+				+1.3
3,675,012	+				-1.4
3,675,012	+				-0.3
3,675,012	+				+3.0
3,675,012	+				+0.9
3,675,012	+				+0.5
3,675,012	+				-0.7
3,675,012	+				+0.3
3,675,012	+				-0.5
3,675,012	+				-0.8
3,675,012	+				-0.3
3,675,012	+				+0.7
3,675,012	+				+1.6
3,675,012	+				-0.2
3,675,012	+				+0.4
3,675,012	+				-1.1
3,675,012	+				+0.7
3,675,013	-				-0.7
3,675,013	-				-0.1
3,675,013	-				-0.7
3,675,013	-				+0.9
3,675,013	-				-0.7
3,675,013	-				+0.5
3,675,013	-				+0.1
3,675,013	-				+0.1
3,675,013	-				+0.1
3,675,013	-				+0.1
3,675,013	-				-0.1
3,675,013	-				+0.3
3,675,013	-				-0.7
3,675,013	-				+0.3
3,675,013	-				+0.9
3,675,013	-				+0.3
3,675,013	-				+0.6
3,675,013	-				+0.9
3,675,013	-				-0.6
3,675,013	-				-0.1
3,675,013	-				+0.9
3,675,013	-				-0.1
3,675,013	-				-0.2
3,675,013	-				-0.0
3,675,013	-				+0.7
3,675,013	-				+0.5
3,675,013	-				+0.3
3,675,013	-				+0.4
3,675,013	-				+0.4
3,675,013	-				-0.6
3,675,013	-				+0.4
3,675,013	-				+0.2
3,675,013	-				-0.7
3,675,013	-				+1.3
3,675,013	-				+0.3
3,675,013	-				-1.2
3,675,013	-				-1.4
3,675,013	-				-0.2
3,675,013	-				+0.1
3,675,013	-				-2.5
3,675,013	-				+0.4
3,675,013	-				+1.9
3,675,013	-				+0.1
3,675,013	-				-0.4
3,675,013	-				+0.3
3,675,013	-				+0.3
3,675,013	-				+0.3
3,675,013	-				+0.1
3,675,013	-				+0.9
3,675,013	-				+1.7
3,675,013	-				+0.5