Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16360

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
3,598,043	+				-2.1
3,598,068	+				+1.2
3,598,139	+				-1.0
3,598,139	+				+1.1
3,598,139	+				-1.8
3,598,140	-				-0.2
3,598,248	+				+0.2
3,598,248	+				+1.0
3,598,248	+				+0.9
3,598,249	-				-0.2
3,598,249	-				+1.0
3,598,249	-				+0.7
3,598,288	+		LRK54_RS16355	0.11	+0.4
3,598,288	+		LRK54_RS16355	0.11	+1.3
3,598,288	+		LRK54_RS16355	0.11	+0.7
3,598,289	-		LRK54_RS16355	0.11	-0.2
3,598,289	-		LRK54_RS16355	0.11	-0.9
3,598,296	+		LRK54_RS16355	0.12	+0.5
3,598,296	+		LRK54_RS16355	0.12	-0.3
3,598,296	+		LRK54_RS16355	0.12	+1.3
3,598,296	+		LRK54_RS16355	0.12	-0.1
3,598,296	+		LRK54_RS16355	0.12	-0.3
3,598,296	+		LRK54_RS16355	0.12	-0.1
3,598,296	+		LRK54_RS16355	0.12	+3.6
3,598,297	-		LRK54_RS16355	0.13	+0.7
3,598,297	-		LRK54_RS16355	0.13	-0.5
3,598,297	-		LRK54_RS16355	0.13	+0.4
3,598,297	-		LRK54_RS16355	0.13	+0.3
3,598,297	-		LRK54_RS16355	0.13	+0.6
3,598,297	-		LRK54_RS16355	0.13	+0.7
3,598,297	-		LRK54_RS16355	0.13	-0.2
3,598,297	-		LRK54_RS16355	0.13	+1.2
3,598,297	-		LRK54_RS16355	0.13	-0.1
3,598,297	-		LRK54_RS16355	0.13	+0.3
3,598,693	+		LRK54_RS16355	0.69	-0.3
3,598,693	+		LRK54_RS16355	0.69	+0.6
3,598,693	+		LRK54_RS16355	0.69	-0.2
3,598,693	+		LRK54_RS16355	0.69	-1.2
3,598,836	+		LRK54_RS16355	0.89	-0.2
3,598,836	+		LRK54_RS16355	0.89	-0.6
3,598,836	+		LRK54_RS16355	0.89	-0.2
3,598,836	+		LRK54_RS16355	0.89	-0.5
3,598,837	-		LRK54_RS16355	0.89	+0.2
3,598,908	+				-0.4
3,598,908	+				-1.7
3,598,908	+				+0.2
3,598,908	+				+2.8
3,598,908	+				-0.3
3,598,908	+				-1.6
3,598,908	+				-0.2
3,598,908	+				+0.1
3,598,908	+				+0.6
3,598,908	+				+1.1
3,598,909	-				-0.5
3,598,909	-				+0.8
3,598,909	-				+1.3
3,598,909	-				+0.6
3,598,909	-				+0.4
3,598,909	-				-0.9
3,598,909	-				-0.1
3,598,947	+				+0.8
3,598,947	+				-0.9
3,598,947	+				+0.1
3,598,948	-				+0.2
3,598,948	-				+0.8
3,598,948	-				-1.3
3,598,948	-				+1.5
3,598,948	-				+0.6
3,599,100	+		LRK54_RS16360	0.54	+0.6
3,599,101	-		LRK54_RS16360	0.54	+0.1
3,599,445	+				-0.7
3,599,445	+				-1.1
3,599,445	+				+0.4
3,599,445	+				+0.1
3,599,446	-				-0.4
3,599,446	-				+0.3
3,599,446	-				+0.2
3,599,446	-				+0.6
3,599,446	-				+1.1
3,599,446	-				+2.0
3,599,475	+		LRK54_RS16365	0.11	+0.3
3,599,475	+		LRK54_RS16365	0.11	-1.2
3,599,475	+		LRK54_RS16365	0.11	+0.1
3,599,475	+		LRK54_RS16365	0.11	-0.6
3,599,475	+		LRK54_RS16365	0.11	-0.0
3,599,475	+		LRK54_RS16365	0.11	+1.1
3,599,475	+		LRK54_RS16365	0.11	+0.5
3,599,475	+		LRK54_RS16365	0.11	+0.8
3,599,475	+		LRK54_RS16365	0.11	-0.0
3,599,475	+		LRK54_RS16365	0.11	+1.6
3,599,475	+		LRK54_RS16365	0.11	-0.2
3,599,475	+		LRK54_RS16365	0.11	-0.4
3,599,475	+		LRK54_RS16365	0.11	-0.6
3,599,475	+		LRK54_RS16365	0.11	-0.1
3,599,476	-		LRK54_RS16365	0.11	-0.3
3,599,476	-		LRK54_RS16365	0.11	-0.4
3,599,476	-		LRK54_RS16365	0.11	+0.7
3,599,476	-		LRK54_RS16365	0.11	-0.8
3,599,476	-		LRK54_RS16365	0.11	+0.1
3,599,476	-		LRK54_RS16365	0.11	-0.3
3,599,476	-		LRK54_RS16365	0.11	+0.8
3,599,476	-		LRK54_RS16365	0.11	+0.6
3,599,476	-		LRK54_RS16365	0.11	+0.1
3,599,476	-		LRK54_RS16365	0.11	-0.4
3,599,643	+		LRK54_RS16365	0.58	-0.1
3,599,643	+		LRK54_RS16365	0.58	-0.6
3,599,643	+		LRK54_RS16365	0.58	-1.8
3,599,643	+		LRK54_RS16365	0.58	-0.6
3,599,643	+		LRK54_RS16365	0.58	-2.2
3,599,643	+		LRK54_RS16365	0.58	+0.3
3,599,643	+		LRK54_RS16365	0.58	+0.3
3,599,643	+		LRK54_RS16365	0.58	-0.1
3,599,643	+		LRK54_RS16365	0.58	+0.8
3,599,643	+		LRK54_RS16365	0.58	-1.5
3,599,643	+		LRK54_RS16365	0.58	-1.2
3,599,643	+		LRK54_RS16365	0.58	-0.6
3,599,643	+		LRK54_RS16365	0.58	-0.2
3,599,643	+		LRK54_RS16365	0.58	-0.4
3,599,643	+		LRK54_RS16365	0.58	-0.7
3,599,643	+		LRK54_RS16365	0.58	+0.2
3,599,643	+		LRK54_RS16365	0.58	-0.2
3,599,643	+		LRK54_RS16365	0.58	+0.2
3,599,644	-		LRK54_RS16365	0.59	+1.6
3,599,644	-		LRK54_RS16365	0.59	-0.9
3,599,644	-		LRK54_RS16365	0.59	+0.6
3,599,644	-		LRK54_RS16365	0.59	+0.6
3,599,644	-		LRK54_RS16365	0.59	-1.0
3,599,644	-		LRK54_RS16365	0.59	+0.2
3,599,644	-		LRK54_RS16365	0.59	+0.1
3,599,644	-		LRK54_RS16365	0.59	+0.3
3,599,644	-		LRK54_RS16365	0.59	-0.2
3,599,644	-		LRK54_RS16365	0.59	+0.6
3,599,644	-		LRK54_RS16365	0.59	+0.6
3,599,644	-		LRK54_RS16365	0.59	-0.4
3,599,644	-		LRK54_RS16365	0.59	+0.6
3,599,644	-		LRK54_RS16365	0.59	+1.1
3,599,644	-		LRK54_RS16365	0.59	-1.3
3,599,644	-		LRK54_RS16365	0.59	+0.5
3,599,644	-		LRK54_RS16365	0.59	+1.0
3,599,644	-		LRK54_RS16365	0.59	+1.6
3,599,644	-		LRK54_RS16365	0.59	-2.4
3,599,644	-		LRK54_RS16365	0.59	-0.5
3,599,644	-		LRK54_RS16365	0.59	+1.6
3,599,644	-		LRK54_RS16365	0.59	-1.5
3,599,644	-		LRK54_RS16365	0.59	-0.2
3,599,644	-		LRK54_RS16365	0.59	-0.0
3,599,644	-		LRK54_RS16365	0.59	-0.4
3,599,661	+		LRK54_RS16365	0.64	-1.6
3,599,661	+		LRK54_RS16365	0.64	-0.3
3,599,661	+		LRK54_RS16365	0.64	+0.2
3,599,661	+		LRK54_RS16365	0.64	-0.0
3,599,661	+		LRK54_RS16365	0.64	+0.8
3,599,661	+		LRK54_RS16365	0.64	-1.7
3,599,661	+		LRK54_RS16365	0.64	+0.1
3,599,661	+		LRK54_RS16365	0.64	+0.1
3,599,661	+		LRK54_RS16365	0.64	-0.2
3,599,661	+		LRK54_RS16365	0.64	-0.3
3,599,661	+		LRK54_RS16365	0.64	-0.5
3,599,661	+		LRK54_RS16365	0.64	-0.4
3,599,661	+		LRK54_RS16365	0.64	+0.6
3,599,661	+		LRK54_RS16365	0.64	-1.3
3,599,661	+		LRK54_RS16365	0.64	+0.5
3,599,661	+		LRK54_RS16365	0.64	-1.0
3,599,662	-		LRK54_RS16365	0.64	-0.5
3,599,662	-		LRK54_RS16365	0.64	-0.6
3,599,662	-		LRK54_RS16365	0.64	-0.9
3,599,662	-		LRK54_RS16365	0.64	-0.3
3,599,662	-		LRK54_RS16365	0.64	-1.4
3,599,662	-		LRK54_RS16365	0.64	-0.3
3,599,662	-		LRK54_RS16365	0.64	+1.3
3,599,662	-		LRK54_RS16365	0.64	-0.3
3,599,662	-		LRK54_RS16365	0.64	-1.1
3,599,662	-		LRK54_RS16365	0.64	+0.1
3,599,662	-		LRK54_RS16365	0.64	-0.2
3,599,662	-		LRK54_RS16365	0.64	+0.5
3,599,662	-		LRK54_RS16365	0.64	+1.4
3,599,662	-		LRK54_RS16365	0.64	-0.6
3,599,662	-		LRK54_RS16365	0.64	-0.7
3,599,680	+		LRK54_RS16365	0.69	+0.2
3,599,681	-		LRK54_RS16365	0.69	-1.2
3,599,787	+				-2.0
3,599,788	-				+0.4
3,599,788	-				-2.0
3,599,788	-				-1.7
3,599,788	-				-1.0
3,599,788	-				+1.1
3,599,788	-				+0.8
3,599,788	-				+0.9
3,599,898	+		LRK54_RS16370	0.13	-1.2
3,599,898	+		LRK54_RS16370	0.13	+0.1
3,599,899	-		LRK54_RS16370	0.14	-1.2
3,599,899	-		LRK54_RS16370	0.14	+0.0
3,599,900	+		LRK54_RS16370	0.14	-0.1
3,599,900	+		LRK54_RS16370	0.14	-1.4
3,599,900	+		LRK54_RS16370	0.14	-0.0
3,599,901	-		LRK54_RS16370	0.14	-0.2
3,599,901	-		LRK54_RS16370	0.14	+1.0
3,599,901	-		LRK54_RS16370	0.14	-0.6
3,599,901	-		LRK54_RS16370	0.14	+0.5
3,599,901	-		LRK54_RS16370	0.14	+0.4
3,599,901	-		LRK54_RS16370	0.14	+0.0
3,599,920	-		LRK54_RS16370	0.17	-0.6
3,599,958	+		LRK54_RS16370	0.24	+1.2
3,599,959	-		LRK54_RS16370	0.24	+0.5
3,599,997	+		LRK54_RS16370	0.30	-0.1
3,599,997	+		LRK54_RS16370	0.30	-0.3
3,599,997	+		LRK54_RS16370	0.30	+0.5
3,599,997	+		LRK54_RS16370	0.30	-0.4
3,599,997	+		LRK54_RS16370	0.30	+0.3
3,599,997	+		LRK54_RS16370	0.30	+0.7
3,599,997	+		LRK54_RS16370	0.30	-0.4
3,599,997	+		LRK54_RS16370	0.30	+2.4
3,599,997	+		LRK54_RS16370	0.30	-0.3
3,599,997	+		LRK54_RS16370	0.30	+0.4
3,599,998	-		LRK54_RS16370	0.31	-1.7
3,599,998	-		LRK54_RS16370	0.31	+0.4
3,599,998	-		LRK54_RS16370	0.31	+0.2
3,599,998	-		LRK54_RS16370	0.31	-0.1
3,599,998	-		LRK54_RS16370	0.31	-0.5
3,599,998	-		LRK54_RS16370	0.31	-0.4
3,599,998	-		LRK54_RS16370	0.31	+0.5
3,599,998	-		LRK54_RS16370	0.31	+0.4
3,599,998	-		LRK54_RS16370	0.31	+0.3
3,599,998	-		LRK54_RS16370	0.31	-1.2
3,599,998	-		LRK54_RS16370	0.31	-0.4
3,599,998	-		LRK54_RS16370	0.31	+0.3
3,599,998	-		LRK54_RS16370	0.31	-0.5
3,599,998	-		LRK54_RS16370	0.31	-0.1
3,599,998	-		LRK54_RS16370	0.31	+0.4
3,599,998	-		LRK54_RS16370	0.31	+0.8
3,599,998	-		LRK54_RS16370	0.31	+0.1
3,600,002	+		LRK54_RS16370	0.31	+0.4
3,600,002	+		LRK54_RS16370	0.31	-2.2
3,600,002	+		LRK54_RS16370	0.31	-0.6
3,600,002	+		LRK54_RS16370	0.31	-0.6
3,600,002	+		LRK54_RS16370	0.31	-0.8
3,600,002	+		LRK54_RS16370	0.31	-0.1
3,600,002	+		LRK54_RS16370	0.31	-1.3
3,600,003	-		LRK54_RS16370	0.31	-0.0
3,600,003	-		LRK54_RS16370	0.31	-0.7
3,600,003	-		LRK54_RS16370	0.31	-1.0
3,600,003	-		LRK54_RS16370	0.31	-0.2
3,600,072	+		LRK54_RS16370	0.43	-0.7
3,600,072	+		LRK54_RS16370	0.43	-0.6
3,600,072	+		LRK54_RS16370	0.43	-1.4
3,600,072	+		LRK54_RS16370	0.43	-0.9
3,600,072	+		LRK54_RS16370	0.43	-1.9
3,600,072	+		LRK54_RS16370	0.43	+0.3
3,600,072	+		LRK54_RS16370	0.43	-0.1
3,600,072	+		LRK54_RS16370	0.43	-1.0
3,600,072	+		LRK54_RS16370	0.43	-1.3
3,600,072	+		LRK54_RS16370	0.43	+0.7
3,600,072	+		LRK54_RS16370	0.43	+0.4
3,600,072	+		LRK54_RS16370	0.43	-0.4
3,600,072	+		LRK54_RS16370	0.43	-0.4
3,600,072	+		LRK54_RS16370	0.43	+0.2
3,600,072	+		LRK54_RS16370	0.43	+0.6
3,600,072	+		LRK54_RS16370	0.43	-0.8
3,600,072	+		LRK54_RS16370	0.43	-0.1
3,600,072	+		LRK54_RS16370	0.43	+0.6
3,600,073	-		LRK54_RS16370	0.43	+0.8
3,600,073	-		LRK54_RS16370	0.43	-0.6
3,600,073	-		LRK54_RS16370	0.43	-1.2
3,600,073	-		LRK54_RS16370	0.43	-1.6
3,600,073	-		LRK54_RS16370	0.43	+1.3
3,600,073	-		LRK54_RS16370	0.43	+0.1
3,600,073	-		LRK54_RS16370	0.43	+0.4
3,600,073	-		LRK54_RS16370	0.43	+0.2
3,600,073	-		LRK54_RS16370	0.43	+0.6
3,600,073	-		LRK54_RS16370	0.43	-0.8
3,600,073	-		LRK54_RS16370	0.43	+1.3
3,600,073	-		LRK54_RS16370	0.43	+0.1