Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15720

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
3,462,365	+		LRK54_RS15715	0.36	+0.2
3,462,365	+		LRK54_RS15715	0.36	+0.1
3,462,366	-		LRK54_RS15715	0.36	+1.0
3,462,366	-		LRK54_RS15715	0.36	-1.1
3,462,434	+		LRK54_RS15715	0.41	-0.5
3,462,434	+		LRK54_RS15715	0.41	-0.0
3,462,434	+		LRK54_RS15715	0.41	-0.1
3,462,435	-		LRK54_RS15715	0.41	+1.4
3,462,435	-		LRK54_RS15715	0.41	-0.5
3,462,435	-		LRK54_RS15715	0.41	+1.0
3,462,615	+		LRK54_RS15715	0.53	-1.4
3,462,615	+		LRK54_RS15715	0.53	-0.6
3,462,616	-		LRK54_RS15715	0.53	-1.3
3,462,621	+		LRK54_RS15715	0.53	-0.9
3,462,621	+		LRK54_RS15715	0.53	+0.6
3,462,621	+		LRK54_RS15715	0.53	-1.4
3,462,621	+		LRK54_RS15715	0.53	+0.3
3,462,621	+		LRK54_RS15715	0.53	+0.2
3,462,621	+		LRK54_RS15715	0.53	-0.3
3,462,621	+		LRK54_RS15715	0.53	+2.0
3,462,621	+		LRK54_RS15715	0.53	-0.3
3,462,621	+		LRK54_RS15715	0.53	-0.3
3,462,621	+		LRK54_RS15715	0.53	+0.1
3,462,621	+		LRK54_RS15715	0.53	-1.0
3,462,621	+		LRK54_RS15715	0.53	-0.5
3,462,621	+		LRK54_RS15715	0.53	+0.1
3,462,622	-		LRK54_RS15715	0.53	-0.2
3,462,622	-		LRK54_RS15715	0.53	+0.4
3,462,622	-		LRK54_RS15715	0.53	-1.1
3,462,622	-		LRK54_RS15715	0.53	+1.0
3,462,622	-		LRK54_RS15715	0.53	-0.9
3,462,622	-		LRK54_RS15715	0.53	+0.6
3,462,622	-		LRK54_RS15715	0.53	-1.8
3,462,622	-		LRK54_RS15715	0.53	+1.2
3,462,622	-		LRK54_RS15715	0.53	-0.1
3,462,622	-		LRK54_RS15715	0.53	-1.5
3,462,622	-		LRK54_RS15715	0.53	+0.5
3,462,622	-		LRK54_RS15715	0.53	+0.8
3,462,622	-		LRK54_RS15715	0.53	+1.8
3,462,622	-		LRK54_RS15715	0.53	-1.4
3,462,633	+		LRK54_RS15715	0.54	+0.1
3,462,633	+		LRK54_RS15715	0.54	-1.2
3,462,633	+		LRK54_RS15715	0.54	-0.6
3,462,633	+		LRK54_RS15715	0.54	-0.6
3,462,634	-		LRK54_RS15715	0.54	-0.5
3,462,634	-		LRK54_RS15715	0.54	-1.0
3,462,634	-		LRK54_RS15715	0.54	-2.2
3,462,645	+		LRK54_RS15715	0.55	+0.5
3,462,645	+		LRK54_RS15715	0.55	-0.9
3,462,645	+		LRK54_RS15715	0.55	+0.4
3,462,645	+		LRK54_RS15715	0.55	+0.1
3,462,645	+		LRK54_RS15715	0.55	-1.3
3,462,645	+		LRK54_RS15715	0.55	-0.2
3,462,645	+		LRK54_RS15715	0.55	+0.1
3,462,646	-		LRK54_RS15715	0.55	+1.4
3,462,646	-		LRK54_RS15715	0.55	+0.0
3,462,646	-		LRK54_RS15715	0.55	+0.5
3,462,678	+		LRK54_RS15715	0.57	+1.4
3,462,678	+		LRK54_RS15715	0.57	+1.2
3,462,678	+		LRK54_RS15715	0.57	+1.6
3,462,678	+		LRK54_RS15715	0.57	-0.5
3,462,678	+		LRK54_RS15715	0.57	+1.4
3,462,678	+		LRK54_RS15715	0.57	+0.1
3,462,678	+		LRK54_RS15715	0.57	+2.8
3,462,678	+		LRK54_RS15715	0.57	-1.5
3,462,678	+		LRK54_RS15715	0.57	-0.2
3,462,678	+		LRK54_RS15715	0.57	+0.4
3,462,678	+		LRK54_RS15715	0.57	+1.0
3,462,678	+		LRK54_RS15715	0.57	-0.6
3,462,678	+		LRK54_RS15715	0.57	+0.6
3,462,678	+		LRK54_RS15715	0.57	-0.1
3,462,679	-		LRK54_RS15715	0.57	+1.2
3,462,679	-		LRK54_RS15715	0.57	-1.1
3,462,679	-		LRK54_RS15715	0.57	-1.9
3,462,679	-		LRK54_RS15715	0.57	+0.3
3,462,679	-		LRK54_RS15715	0.57	-0.1
3,462,679	-		LRK54_RS15715	0.57	+0.3
3,462,679	-		LRK54_RS15715	0.57	-1.3
3,462,679	-		LRK54_RS15715	0.57	+0.4
3,462,679	-		LRK54_RS15715	0.57	+0.3
3,462,679	-		LRK54_RS15715	0.57	+0.8
3,462,679	-		LRK54_RS15715	0.57	-0.5
3,462,679	-		LRK54_RS15715	0.57	+0.1
3,462,679	-		LRK54_RS15715	0.57	+0.3
3,462,679	-		LRK54_RS15715	0.57	+0.0
3,462,679	-		LRK54_RS15715	0.57	-0.7
3,462,679	-		LRK54_RS15715	0.57	+0.1
3,462,679	-		LRK54_RS15715	0.57	-0.3
3,462,679	-		LRK54_RS15715	0.57	+0.7
3,462,679	-		LRK54_RS15715	0.57	+0.1
3,462,679	-		LRK54_RS15715	0.57	+1.4
3,462,681	+		LRK54_RS15715	0.57	+0.1
3,462,682	-		LRK54_RS15715	0.57	+0.4
3,462,705	+		LRK54_RS15715	0.59	+1.8
3,462,705	+		LRK54_RS15715	0.59	+0.0
3,462,705	+		LRK54_RS15715	0.59	-0.5
3,462,705	+		LRK54_RS15715	0.59	-0.2
3,462,705	+		LRK54_RS15715	0.59	+0.2
3,462,705	+		LRK54_RS15715	0.59	+1.2
3,462,705	+		LRK54_RS15715	0.59	-1.1
3,462,705	+		LRK54_RS15715	0.59	-0.8
3,462,705	+		LRK54_RS15715	0.59	-0.8
3,462,705	+		LRK54_RS15715	0.59	+0.1
3,462,706	-		LRK54_RS15715	0.59	+0.6
3,462,706	-		LRK54_RS15715	0.59	+0.3
3,462,706	-		LRK54_RS15715	0.59	-0.8
3,462,706	-		LRK54_RS15715	0.59	+0.3
3,462,706	-		LRK54_RS15715	0.59	+0.0
3,462,795	+		LRK54_RS15715	0.65	+0.6
3,462,796	-		LRK54_RS15715	0.65	+0.6
3,462,939	+		LRK54_RS15715	0.74	-0.3
3,462,939	+		LRK54_RS15715	0.74	+1.0
3,462,939	+		LRK54_RS15715	0.74	-0.6
3,462,939	+		LRK54_RS15715	0.74	+0.2
3,462,939	+		LRK54_RS15715	0.74	-1.1
3,462,939	+		LRK54_RS15715	0.74	-0.7
3,462,939	+		LRK54_RS15715	0.74	+0.3
3,462,939	+		LRK54_RS15715	0.74	+0.5
3,462,939	+		LRK54_RS15715	0.74	-0.2
3,462,939	+		LRK54_RS15715	0.74	-1.3
3,462,939	+		LRK54_RS15715	0.74	-0.2
3,462,939	+		LRK54_RS15715	0.74	-1.2
3,462,939	+		LRK54_RS15715	0.74	-0.2
3,462,939	+		LRK54_RS15715	0.74	-0.3
3,462,939	+		LRK54_RS15715	0.74	-1.2
3,462,939	+		LRK54_RS15715	0.74	+0.0
3,462,939	+		LRK54_RS15715	0.74	-0.2
3,462,939	+		LRK54_RS15715	0.74	-0.9
3,462,939	+		LRK54_RS15715	0.74	-0.3
3,462,939	+		LRK54_RS15715	0.74	-0.6
3,462,939	+		LRK54_RS15715	0.74	-0.2
3,462,939	+		LRK54_RS15715	0.74	+0.6
3,462,939	+		LRK54_RS15715	0.74	-0.2
3,462,939	+		LRK54_RS15715	0.74	+0.3
3,462,939	+		LRK54_RS15715	0.74	+0.4
3,462,939	+		LRK54_RS15715	0.74	-0.2
3,462,939	+		LRK54_RS15715	0.74	+0.9
3,462,939	+		LRK54_RS15715	0.74	-2.6
3,462,939	+		LRK54_RS15715	0.74	+1.1
3,462,939	+		LRK54_RS15715	0.74	-0.2
3,462,939	+		LRK54_RS15715	0.74	+0.2
3,462,939	+		LRK54_RS15715	0.74	+0.9
3,462,939	+		LRK54_RS15715	0.74	-0.2
3,462,939	+		LRK54_RS15715	0.74	-1.0
3,462,939	+		LRK54_RS15715	0.74	-0.6
3,462,939	+		LRK54_RS15715	0.74	-0.4
3,462,939	+		LRK54_RS15715	0.74	+0.6
3,462,939	+		LRK54_RS15715	0.74	-1.5
3,462,940	-		LRK54_RS15715	0.74	+0.2
3,462,940	-		LRK54_RS15715	0.74	-1.5
3,462,940	-		LRK54_RS15715	0.74	+1.7
3,462,940	-		LRK54_RS15715	0.74	+0.3
3,462,940	-		LRK54_RS15715	0.74	-0.7
3,462,940	-		LRK54_RS15715	0.74	-0.9
3,462,940	-		LRK54_RS15715	0.74	+0.2
3,462,940	-		LRK54_RS15715	0.74	+0.1
3,462,940	-		LRK54_RS15715	0.74	-0.8
3,462,940	-		LRK54_RS15715	0.74	-0.8
3,462,940	-		LRK54_RS15715	0.74	-0.3
3,462,940	-		LRK54_RS15715	0.74	-0.4
3,462,940	-		LRK54_RS15715	0.74	-0.1
3,462,940	-		LRK54_RS15715	0.74	+0.8
3,462,940	-		LRK54_RS15715	0.74	-0.2
3,462,940	-		LRK54_RS15715	0.74	-1.4
3,462,940	-		LRK54_RS15715	0.74	-1.2
3,462,940	-		LRK54_RS15715	0.74	+0.2
3,462,940	-		LRK54_RS15715	0.74	+0.8
3,462,940	-		LRK54_RS15715	0.74	-1.0
3,462,940	-		LRK54_RS15715	0.74	-0.4
3,462,940	-		LRK54_RS15715	0.74	-0.9
3,462,940	-		LRK54_RS15715	0.74	+0.0
3,462,940	-		LRK54_RS15715	0.74	+0.3
3,462,940	-		LRK54_RS15715	0.74	-0.2
3,462,940	-		LRK54_RS15715	0.74	+0.3
3,462,940	-		LRK54_RS15715	0.74	+0.0
3,462,940	-		LRK54_RS15715	0.74	-0.4
3,462,940	-		LRK54_RS15715	0.74	+0.2
3,462,940	-		LRK54_RS15715	0.74	-0.0
3,462,940	-		LRK54_RS15715	0.74	-1.5
3,462,940	-		LRK54_RS15715	0.74	-0.6
3,462,940	-		LRK54_RS15715	0.74	+0.6
3,462,940	-		LRK54_RS15715	0.74	+0.1
3,462,940	-		LRK54_RS15715	0.74	-0.2
3,462,940	-		LRK54_RS15715	0.74	-0.5
3,462,940	-		LRK54_RS15715	0.74	+2.1
3,462,940	-		LRK54_RS15715	0.74	+0.4
3,463,051	+		LRK54_RS15715	0.82	-0.1
3,463,065	+		LRK54_RS15715	0.83	+0.6
3,463,065	+		LRK54_RS15715	0.83	-0.7
3,463,065	+		LRK54_RS15715	0.83	+0.3
3,463,066	-		LRK54_RS15715	0.83	+0.7
3,463,066	-		LRK54_RS15715	0.83	-0.8
3,463,066	-		LRK54_RS15715	0.83	-0.2
3,463,066	-		LRK54_RS15715	0.83	-1.2
3,463,066	-		LRK54_RS15715	0.83	-0.3
3,463,142	+		LRK54_RS15715	0.88	+0.5
3,463,142	+		LRK54_RS15715	0.88	-0.8
3,463,142	+		LRK54_RS15715	0.88	+0.7
3,463,143	-		LRK54_RS15715	0.88	-0.2
3,463,143	-		LRK54_RS15715	0.88	-0.1
3,463,143	-		LRK54_RS15715	0.88	-0.8
3,463,823	+		LRK54_RS15720	0.65	+1.4
3,463,824	-		LRK54_RS15720	0.65	-0.2
3,463,824	-		LRK54_RS15720	0.65	+1.2
3,464,183	+				-0.2
3,464,183	+				-0.1
3,464,183	+				-0.6
3,464,183	+				-0.2
3,464,183	+				-0.1
3,464,183	+				-0.1
3,464,183	+				+0.8
3,464,183	+				+0.5
3,464,183	+				-0.2
3,464,183	+				-1.3
3,464,184	-				+0.6
3,464,184	-				-0.3
3,464,184	-				+0.2
3,464,184	-				-1.4
3,464,184	-				+0.0
3,464,184	-				+0.1
3,464,184	-				+0.7
3,464,184	-				-0.5
3,464,184	-				-0.3
3,464,184	-				+1.2
3,464,184	-				+0.5
3,464,208	-				-0.5
3,464,230	+				+1.1
3,464,230	+				-0.2
3,464,230	+				-0.6
3,464,230	+				-0.7
3,464,230	+				-0.6
3,464,230	+				+0.6
3,464,230	+				-0.1
3,464,230	+				+0.1
3,464,231	-				-2.3
3,464,231	-				-0.1
3,464,231	-				-0.5
3,464,231	-				+2.2
3,464,231	-				+0.4
3,464,231	-				+1.7
3,464,231	-				+1.2
3,464,231	-				+0.3
3,464,231	-				+1.1
3,464,231	-				-0.8
3,464,281	+				-0.2
3,464,281	+				-0.1
3,464,281	+				-0.2
3,464,281	+				-1.1
3,464,281	+				+1.0
3,464,281	+				+2.4
3,464,281	+				+0.4
3,464,281	+				-1.0
3,464,281	+				-0.5
3,464,281	+				-1.5
3,464,281	+				-1.1
3,464,281	+				-0.3
3,464,281	+				+0.7
3,464,281	+				-0.7
3,464,281	+				-0.3
3,464,281	+				-0.8
3,464,281	+				+0.4
3,464,281	+				+1.2
3,464,281	+				-0.8
3,464,281	+				-1.3
3,464,281	+				-0.5
3,464,281	+				-0.8
3,464,281	+				+0.8
3,464,282	-				-0.2
3,464,282	-				-0.6
3,464,282	-				+0.0
3,464,282	-				-1.5
3,464,282	-				-0.6
3,464,282	-				-0.7
3,464,282	-				+0.0
3,464,282	-				+2.8
3,464,282	-				+0.2
3,464,282	-				-1.3
3,464,282	-				+1.5
3,464,282	-				-0.4
3,464,282	-				+0.3
3,464,282	-				-1.8
3,464,282	-				+1.4
3,464,282	-				-0.5
3,464,282	-				+0.9
3,464,338	+				-1.2
3,464,617	+		LRK54_RS15725	0.28	-1.9
3,464,617	+		LRK54_RS15725	0.28	+0.4
3,464,617	+		LRK54_RS15725	0.28	+1.0
3,464,617	+		LRK54_RS15725	0.28	+2.0
3,464,617	+		LRK54_RS15725	0.28	+0.4
3,464,617	+		LRK54_RS15725	0.28	-2.4
3,464,618	-		LRK54_RS15725	0.28	+0.3
3,464,618	-		LRK54_RS15725	0.28	+0.6
3,464,618	-		LRK54_RS15725	0.28	+0.7
3,464,618	-		LRK54_RS15725	0.28	-0.8
3,464,618	-		LRK54_RS15725	0.28	-0.3
3,464,618	-		LRK54_RS15725	0.28	-0.1
3,464,618	-		LRK54_RS15725	0.28	-0.6
3,464,618	-		LRK54_RS15725	0.28	-0.6
3,464,618	-		LRK54_RS15725	0.28	+0.5
3,464,618	-		LRK54_RS15725	0.28	-0.2
3,464,618	-		LRK54_RS15725	0.28	+0.5
3,464,618	-		LRK54_RS15725	0.28	-0.4
3,464,618	-		LRK54_RS15725	0.28	-1.3
3,464,731	+		LRK54_RS15725	0.36	-0.2
3,464,731	+		LRK54_RS15725	0.36	+0.6
3,464,731	+		LRK54_RS15725	0.36	+0.8
3,464,731	+		LRK54_RS15725	0.36	-0.8
3,464,731	+		LRK54_RS15725	0.36	+0.3
3,464,731	+		LRK54_RS15725	0.36	+0.4
3,464,731	+		LRK54_RS15725	0.36	-0.1
3,464,731	+		LRK54_RS15725	0.36	+0.1
3,464,731	+		LRK54_RS15725	0.36	+1.0
3,464,731	+		LRK54_RS15725	0.36	-0.3
3,464,731	+		LRK54_RS15725	0.36	+0.3
3,464,731	+		LRK54_RS15725	0.36	-0.5
3,464,731	+		LRK54_RS15725	0.36	-0.0
3,464,731	+		LRK54_RS15725	0.36	-0.2
3,464,732	-		LRK54_RS15725	0.36	-0.8
3,464,732	-		LRK54_RS15725	0.36	+0.1
3,464,732	-		LRK54_RS15725	0.36	-0.0
3,464,732	-		LRK54_RS15725	0.36	+0.2
3,464,732	-		LRK54_RS15725	0.36	-0.4
3,464,732	-		LRK54_RS15725	0.36	+0.1
3,464,732	-		LRK54_RS15725	0.36	-0.6
3,464,732	-		LRK54_RS15725	0.36	+1.7
3,464,732	-		LRK54_RS15725	0.36	-0.2
3,464,732	-		LRK54_RS15725	0.36	+0.8
3,464,732	-		LRK54_RS15725	0.36	+0.8
3,464,732	-		LRK54_RS15725	0.36	-0.6
3,464,732	-		LRK54_RS15725	0.36	-1.8
3,464,732	-		LRK54_RS15725	0.36	+0.4
3,464,732	-		LRK54_RS15725	0.36	-0.8
3,464,821	+		LRK54_RS15725	0.43	-0.4
3,464,821	+		LRK54_RS15725	0.43	-1.4
3,464,821	+		LRK54_RS15725	0.43	-0.8
3,464,821	+		LRK54_RS15725	0.43	-0.6
3,464,822	-		LRK54_RS15725	0.43	-1.9
3,464,822	-		LRK54_RS15725	0.43	-1.0
3,464,822	-		LRK54_RS15725	0.43	-0.6
3,464,822	-		LRK54_RS15725	0.43	-0.6
3,464,822	-		LRK54_RS15725	0.43	-0.2
3,464,839	+		LRK54_RS15725	0.44	-0.6
3,464,839	+		LRK54_RS15725	0.44	-0.2
3,464,839	+		LRK54_RS15725	0.44	+0.3
3,464,839	+		LRK54_RS15725	0.44	-0.2
3,464,839	+		LRK54_RS15725	0.44	+0.4
3,464,839	+		LRK54_RS15725	0.44	-1.7
3,464,839	+		LRK54_RS15725	0.44	+0.0
3,464,839	+		LRK54_RS15725	0.44	+0.4
3,464,840	-		LRK54_RS15725	0.44	-1.7
3,464,840	-		LRK54_RS15725	0.44	+0.9
3,464,840	-		LRK54_RS15725	0.44	+0.2
3,464,840	-		LRK54_RS15725	0.44	+0.2
3,464,840	-		LRK54_RS15725	0.44	+0.1
3,464,840	-		LRK54_RS15725	0.44	-1.5
3,464,840	-		LRK54_RS15725	0.44	-0.4
3,464,840	-		LRK54_RS15725	0.44	-0.1
3,464,840	-		LRK54_RS15725	0.44	+0.8
3,464,840	-		LRK54_RS15725	0.44	-0.2
3,464,840	-		LRK54_RS15725	0.44	-0.5
3,464,840	-		LRK54_RS15725	0.44	-0.1
3,464,840	-		LRK54_RS15725	0.44	+1.1
3,464,840	-		LRK54_RS15725	0.44	+0.0
3,464,840	-		LRK54_RS15725	0.44	-0.5
3,464,840	-		LRK54_RS15725	0.44	+0.1
3,464,840	-		LRK54_RS15725	0.44	+0.2
3,464,840	-		LRK54_RS15725	0.44	+0.6
3,464,840	-		LRK54_RS15725	0.44	-0.9
3,465,064	+		LRK54_RS15725	0.60	-0.6
3,465,064	+		LRK54_RS15725	0.60	-0.6
3,465,064	+		LRK54_RS15725	0.60	+0.4
3,465,064	+		LRK54_RS15725	0.60	+0.6
3,465,064	+		LRK54_RS15725	0.60	+1.3
3,465,064	+		LRK54_RS15725	0.60	+0.2
3,465,064	+		LRK54_RS15725	0.60	-0.2
3,465,064	-		LRK54_RS15725	0.60	-0.2
3,465,065	-		LRK54_RS15725	0.60	+0.8
3,465,065	-		LRK54_RS15725	0.60	-0.0
3,465,065	-		LRK54_RS15725	0.60	-1.5
3,465,065	-		LRK54_RS15725	0.60	+0.1
3,465,065	-		LRK54_RS15725	0.60	+0.0
3,465,065	-		LRK54_RS15725	0.60	+0.9
3,465,065	-		LRK54_RS15725	0.60	+1.8