Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15625

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
3,445,792	+		LRK54_RS15615	0.37	+0.5
3,445,792	+		LRK54_RS15615	0.37	+0.4
3,445,793	-		LRK54_RS15615	0.37	-0.4
3,445,831	+		LRK54_RS15615	0.43	-0.4
3,445,897	+		LRK54_RS15615	0.53	+1.1
3,445,897	+		LRK54_RS15615	0.53	+0.1
3,445,897	+		LRK54_RS15615	0.53	-0.9
3,445,897	+		LRK54_RS15615	0.53	+1.8
3,445,897	+		LRK54_RS15615	0.53	+0.2
3,445,897	+		LRK54_RS15615	0.53	+1.0
3,445,897	+		LRK54_RS15615	0.53	-0.3
3,445,897	+		LRK54_RS15615	0.53	+0.8
3,445,897	+		LRK54_RS15615	0.53	-1.6
3,445,897	+		LRK54_RS15615	0.53	-0.9
3,445,897	+		LRK54_RS15615	0.53	+0.6
3,445,897	+		LRK54_RS15615	0.53	-0.5
3,445,897	+		LRK54_RS15615	0.53	-0.1
3,445,897	+		LRK54_RS15615	0.53	+0.6
3,445,897	+		LRK54_RS15615	0.53	-0.3
3,445,897	+		LRK54_RS15615	0.53	+1.6
3,445,897	+		LRK54_RS15615	0.53	+1.2
3,445,897	+		LRK54_RS15615	0.53	-0.4
3,445,897	+		LRK54_RS15615	0.53	-0.4
3,445,897	+		LRK54_RS15615	0.53	+1.2
3,445,897	+		LRK54_RS15615	0.53	+1.6
3,445,897	+		LRK54_RS15615	0.53	+0.6
3,445,898	-		LRK54_RS15615	0.53	+0.3
3,445,898	-		LRK54_RS15615	0.53	-0.8
3,445,898	-		LRK54_RS15615	0.53	-0.2
3,445,898	-		LRK54_RS15615	0.53	+0.1
3,445,898	-		LRK54_RS15615	0.53	+1.4
3,445,898	-		LRK54_RS15615	0.53	+0.5
3,445,898	-		LRK54_RS15615	0.53	-1.9
3,445,898	-		LRK54_RS15615	0.53	-1.3
3,445,898	-		LRK54_RS15615	0.53	-0.0
3,445,898	-		LRK54_RS15615	0.53	+1.4
3,445,898	-		LRK54_RS15615	0.53	-0.5
3,445,898	-		LRK54_RS15615	0.53	+0.5
3,445,898	-		LRK54_RS15615	0.53	-0.6
3,445,898	-		LRK54_RS15615	0.53	-1.6
3,445,898	-		LRK54_RS15615	0.53	+0.6
3,445,993	+		LRK54_RS15615	0.67	-0.2
3,445,993	+		LRK54_RS15615	0.67	-0.2
3,445,994	-		LRK54_RS15615	0.68	-0.5
3,445,994	-		LRK54_RS15615	0.68	+0.2
3,445,994	-		LRK54_RS15615	0.68	+0.5
3,445,994	-		LRK54_RS15615	0.68	+0.2
3,445,994	-		LRK54_RS15615	0.68	-0.2
3,445,994	-		LRK54_RS15615	0.68	+2.4
3,445,994	-		LRK54_RS15615	0.68	+0.5
3,446,143	+				+0.7
3,446,143	+				-0.8
3,446,144	-				-0.3
3,446,144	-				-1.4
3,446,144	-				+0.4
3,446,144	-				-0.9
3,446,144	-				-1.0
3,446,170	+				-0.1
3,446,170	+				+0.6
3,446,170	+				+2.4
3,446,170	+				+1.4
3,446,170	+				+1.1
3,446,171	-				-0.2
3,446,171	-				+1.3
3,446,171	-				-0.4
3,446,171	-				+1.1
3,446,171	-				+0.5
3,446,171	-				-0.3
3,446,171	-				+2.4
3,446,171	-				-0.1
3,446,191	+				+0.3
3,446,191	+				-1.7
3,446,191	+				+0.5
3,446,191	+				-1.4
3,446,192	-				+0.7
3,446,192	-				-0.4
3,446,192	-				-1.8
3,446,192	-				+0.7
3,446,192	-				+0.2
3,446,382	+				-1.0
3,446,382	+				-0.3
3,446,382	+				+0.1
3,446,382	+				+0.1
3,446,493	-		LRK54_RS15620	0.51	-0.6
3,446,570	+		LRK54_RS15620	0.83	+0.7
3,446,570	+		LRK54_RS15620	0.83	+0.2
3,446,570	+		LRK54_RS15620	0.83	-0.1
3,446,570	+		LRK54_RS15620	0.83	-0.0
3,446,570	+		LRK54_RS15620	0.83	-1.5
3,446,570	+		LRK54_RS15620	0.83	-1.0
3,446,570	+		LRK54_RS15620	0.83	+2.1
3,446,571	-		LRK54_RS15620	0.83	+0.4
3,446,571	-		LRK54_RS15620	0.83	-1.2
3,446,571	-		LRK54_RS15620	0.83	+1.1
3,446,571	-		LRK54_RS15620	0.83	+0.7
3,446,571	-		LRK54_RS15620	0.83	+0.2
3,446,571	-		LRK54_RS15620	0.83	-0.1
3,446,571	-		LRK54_RS15620	0.83	-0.3
3,446,947	+		LRK54_RS15625	0.20	+1.1
3,446,947	+		LRK54_RS15625	0.20	-0.5
3,446,947	+		LRK54_RS15625	0.20	-2.1
3,446,948	-		LRK54_RS15625	0.20	-0.0
3,446,948	-		LRK54_RS15625	0.20	+0.2
3,446,948	-		LRK54_RS15625	0.20	-0.4
3,446,948	-		LRK54_RS15625	0.20	-0.6
3,447,051	+		LRK54_RS15625	0.28	-0.4
3,447,051	+		LRK54_RS15625	0.28	-1.7
3,447,052	-		LRK54_RS15625	0.28	+1.1
3,447,052	-		LRK54_RS15625	0.28	+0.5
3,447,052	-		LRK54_RS15625	0.28	-0.1
3,447,504	+		LRK54_RS15625	0.65	-1.5
3,447,522	+		LRK54_RS15625	0.67	-0.2
3,447,522	+		LRK54_RS15625	0.67	+0.3
3,447,523	-		LRK54_RS15625	0.67	+0.8
3,447,702	+		LRK54_RS15625	0.81	+0.6
3,447,738	+		LRK54_RS15625	0.84	+1.0
3,447,738	+		LRK54_RS15625	0.84	+0.6
3,447,738	+		LRK54_RS15625	0.84	+1.0
3,447,738	+		LRK54_RS15625	0.84	+0.4
3,447,738	+		LRK54_RS15625	0.84	+0.7
3,447,738	+		LRK54_RS15625	0.84	+0.3
3,447,738	+		LRK54_RS15625	0.84	-1.5
3,447,738	+		LRK54_RS15625	0.84	+0.8
3,447,738	+		LRK54_RS15625	0.84	+0.8
3,447,738	+		LRK54_RS15625	0.84	+0.0
3,447,739	-		LRK54_RS15625	0.84	+0.0
3,447,739	-		LRK54_RS15625	0.84	+0.5
3,447,739	-		LRK54_RS15625	0.84	-0.2
3,447,739	-		LRK54_RS15625	0.84	+1.1
3,447,739	-		LRK54_RS15625	0.84	-1.7
3,447,739	-		LRK54_RS15625	0.84	+1.0
3,447,739	-		LRK54_RS15625	0.84	-0.4
3,447,739	-		LRK54_RS15625	0.84	-0.4
3,447,768	+		LRK54_RS15625	0.87	+0.4
3,447,768	+		LRK54_RS15625	0.87	+0.3
3,447,768	+		LRK54_RS15625	0.87	-0.8
3,447,768	+		LRK54_RS15625	0.87	+1.5
3,447,768	+		LRK54_RS15625	0.87	-0.1
3,447,768	+		LRK54_RS15625	0.87	-0.8
3,447,768	+		LRK54_RS15625	0.87	-0.8
3,447,768	+		LRK54_RS15625	0.87	-0.6
3,447,769	-		LRK54_RS15625	0.87	-0.3
3,447,769	-		LRK54_RS15625	0.87	-2.8
3,448,231	+		LRK54_RS15630	0.30	-0.6
3,448,231	+		LRK54_RS15630	0.30	-1.1
3,448,231	+		LRK54_RS15630	0.30	+1.7
3,448,231	+		LRK54_RS15630	0.30	+0.3
3,448,232	-		LRK54_RS15630	0.30	+0.6
3,448,232	-		LRK54_RS15630	0.30	-0.2
3,448,232	-		LRK54_RS15630	0.30	-0.4
3,448,232	-		LRK54_RS15630	0.30	-0.2
3,448,232	-		LRK54_RS15630	0.30	-1.0
3,448,232	-		LRK54_RS15630	0.30	+0.8
3,448,232	-		LRK54_RS15630	0.30	-1.2
3,448,232	-		LRK54_RS15630	0.30	-0.6
3,448,237	+		LRK54_RS15630	0.30	-0.6
3,448,237	+		LRK54_RS15630	0.30	+1.6
3,448,237	+		LRK54_RS15630	0.30	-0.3
3,448,237	+		LRK54_RS15630	0.30	+0.3
3,448,237	+		LRK54_RS15630	0.30	+0.8
3,448,237	+		LRK54_RS15630	0.30	+1.4
3,448,237	+		LRK54_RS15630	0.30	+2.4
3,448,237	+		LRK54_RS15630	0.30	-1.1
3,448,237	+		LRK54_RS15630	0.30	-0.4
3,448,237	+		LRK54_RS15630	0.30	+1.8
3,448,237	+		LRK54_RS15630	0.30	+1.1
3,448,237	+		LRK54_RS15630	0.30	-0.2
3,448,237	+		LRK54_RS15630	0.30	-0.1
3,448,237	+		LRK54_RS15630	0.30	-0.6
3,448,237	+		LRK54_RS15630	0.30	-0.5
3,448,237	+		LRK54_RS15630	0.30	-0.3
3,448,237	+		LRK54_RS15630	0.30	+2.4
3,448,237	+		LRK54_RS15630	0.30	-0.0
3,448,237	+		LRK54_RS15630	0.30	+0.7
3,448,237	+		LRK54_RS15630	0.30	-0.1
3,448,237	+		LRK54_RS15630	0.30	+0.1
3,448,237	+		LRK54_RS15630	0.30	-0.4
3,448,237	+		LRK54_RS15630	0.30	+0.7
3,448,237	-		LRK54_RS15630	0.30	+0.8
3,448,238	-		LRK54_RS15630	0.30	+0.4
3,448,238	-		LRK54_RS15630	0.30	-0.8
3,448,238	-		LRK54_RS15630	0.30	-1.2
3,448,238	-		LRK54_RS15630	0.30	-0.6
3,448,238	-		LRK54_RS15630	0.30	-0.3
3,448,238	-		LRK54_RS15630	0.30	+0.4
3,448,238	-		LRK54_RS15630	0.30	-1.5
3,448,238	-		LRK54_RS15630	0.30	-0.0
3,448,238	-		LRK54_RS15630	0.30	+0.2
3,448,238	-		LRK54_RS15630	0.30	+0.4
3,448,238	-		LRK54_RS15630	0.30	-0.4
3,448,238	-		LRK54_RS15630	0.30	-0.3
3,448,238	-		LRK54_RS15630	0.30	+0.2
3,448,238	-		LRK54_RS15630	0.30	-0.0
3,448,238	-		LRK54_RS15630	0.30	-0.2
3,448,238	-		LRK54_RS15630	0.30	+1.5
3,448,238	-		LRK54_RS15630	0.30	+1.4
3,448,238	-		LRK54_RS15630	0.30	-0.4
3,448,238	-		LRK54_RS15630	0.30	-0.2
3,448,238	-		LRK54_RS15630	0.30	+0.4
3,448,238	-		LRK54_RS15630	0.30	+0.8
3,448,846	+				-2.2
3,448,846	+				-0.6
3,448,846	+				-1.5
3,448,846	+				+0.6
3,448,846	+				+0.4
3,448,846	+				-0.4
3,448,846	+				-0.1
3,448,846	+				-0.1
3,448,846	+				-0.2
3,448,846	+				-0.6
3,448,846	+				+0.2
3,448,846	+				-1.6
3,448,846	+				-0.2
3,448,846	+				+0.2
3,448,846	+				+0.7
3,448,846	+				+1.2
3,448,846	+				+0.2
3,448,846	+				+0.2
3,448,846	+				-0.8
3,448,846	+				-0.8
3,448,846	+				-0.5
3,448,846	+				+0.8
3,448,846	+				-0.0
3,448,846	+				+0.6
3,448,846	+				-0.8
3,448,846	+				+1.1
3,448,846	+				+0.7
3,448,846	+				-0.7
3,448,846	+				-0.6
3,448,846	+				+1.4
3,448,846	+				+0.5
3,448,846	+				-1.0
3,448,846	+				+2.1
3,448,846	+				-0.8
3,448,846	+				+0.3
3,448,846	+				-0.1
3,448,846	+				-1.2
3,448,846	+				-1.4
3,448,846	+				-0.3
3,448,846	+				+0.3
3,448,846	+				+1.4
3,448,846	+				-0.4
3,448,846	+				-1.3
3,448,846	+				-0.8
3,448,846	+				+0.5
3,448,846	+				-1.8
3,448,846	+				-0.4
3,448,846	+				+1.6
3,448,846	+				-0.9
3,448,846	+				-0.3
3,448,846	+				-0.5
3,448,846	+				+0.5
3,448,846	+				+0.2
3,448,846	+				+0.2
3,448,846	+				-1.0
3,448,846	+				-0.7
3,448,847	-				-0.8
3,448,847	-				+0.3
3,448,847	-				+1.8
3,448,847	-				-0.6
3,448,847	-				-1.6
3,448,847	-				+0.5
3,448,847	-				+0.1
3,448,847	-				-0.4
3,448,847	-				-0.4
3,448,847	-				+0.0
3,448,847	-				-0.2
3,448,847	-				+0.6
3,448,847	-				-1.0
3,448,847	-				+1.5
3,448,847	-				-0.4
3,448,847	-				-0.4
3,448,847	-				+1.0
3,448,847	-				+1.3
3,448,847	-				-0.4
3,448,847	-				+0.4
3,448,847	-				-0.4
3,448,847	-				-0.9
3,448,847	-				-0.4
3,448,847	-				+0.8
3,448,847	-				+1.0
3,448,847	-				-0.4
3,448,847	-				+0.3
3,448,847	-				+0.3
3,448,847	-				+0.9
3,448,847	-				+0.2
3,448,847	-				-0.3
3,448,847	-				+0.4
3,448,847	-				-0.2
3,448,847	-				+0.3
3,448,847	-				-0.5
3,448,847	-				-0.1
3,448,847	-				-0.7
3,448,847	-				-0.5
3,448,847	-				+1.4
3,448,847	-				+1.9
3,448,848	-				+0.8
3,448,864	+				-0.3
3,448,864	+				-0.1
3,448,864	+				-2.0
3,448,864	+				+0.8
3,448,864	+				+0.8
3,448,865	-				-0.0
3,448,865	-				-0.2
3,448,865	-				+2.4
3,448,865	-				+0.6
3,448,865	-				+0.5
3,448,865	-				+0.2
3,448,865	-				-0.5
3,448,865	-				-0.8
3,448,901	+				+0.4