Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15215

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
3,358,145	+		LRK54_RS15210	0.74	-1.7
3,358,145	+		LRK54_RS15210	0.74	-0.8
3,358,146	-		LRK54_RS15210	0.74	+0.1
3,358,146	-		LRK54_RS15210	0.74	-0.0
3,358,146	-		LRK54_RS15210	0.74	+0.8
3,358,146	-		LRK54_RS15210	0.74	+1.0
3,358,146	-		LRK54_RS15210	0.74	+0.2
3,358,146	-		LRK54_RS15210	0.74	+1.6
3,358,166	+		LRK54_RS15210	0.74	+1.0
3,358,166	+		LRK54_RS15210	0.74	+0.8
3,358,166	+		LRK54_RS15210	0.74	+0.5
3,358,166	+		LRK54_RS15210	0.74	-2.2
3,358,167	-		LRK54_RS15210	0.74	+1.0
3,358,167	-		LRK54_RS15210	0.74	+0.1
3,358,167	-		LRK54_RS15210	0.74	+0.3
3,358,167	-		LRK54_RS15210	0.74	-2.3
3,358,167	-		LRK54_RS15210	0.74	-1.2
3,358,167	-		LRK54_RS15210	0.74	-0.7
3,358,246	+		LRK54_RS15210	0.77	-0.2
3,358,247	-		LRK54_RS15210	0.77	-0.7
3,358,478	+		LRK54_RS15210	0.85	+0.4
3,358,478	+		LRK54_RS15210	0.85	-0.0
3,358,478	+		LRK54_RS15210	0.85	+0.3
3,358,478	+		LRK54_RS15210	0.85	+1.6
3,358,478	+		LRK54_RS15210	0.85	+0.8
3,358,478	+		LRK54_RS15210	0.85	-1.7
3,358,478	+		LRK54_RS15210	0.85	-0.7
3,358,478	+		LRK54_RS15210	0.85	-0.5
3,358,478	+		LRK54_RS15210	0.85	+0.3
3,358,478	+		LRK54_RS15210	0.85	+1.4
3,358,478	+		LRK54_RS15210	0.85	-2.3
3,358,478	+		LRK54_RS15210	0.85	+1.4
3,358,478	+		LRK54_RS15210	0.85	-0.9
3,358,478	+		LRK54_RS15210	0.85	+0.4
3,358,478	+		LRK54_RS15210	0.85	-0.2
3,358,478	+		LRK54_RS15210	0.85	-0.2
3,358,478	+		LRK54_RS15210	0.85	-0.2
3,358,478	+		LRK54_RS15210	0.85	+0.5
3,358,478	+		LRK54_RS15210	0.85	-2.5
3,358,479	-		LRK54_RS15210	0.85	+0.1
3,358,479	-		LRK54_RS15210	0.85	-1.9
3,358,479	-		LRK54_RS15210	0.85	-0.9
3,358,479	-		LRK54_RS15210	0.85	+0.1
3,358,479	-		LRK54_RS15210	0.85	-0.1
3,358,479	-		LRK54_RS15210	0.85	+0.2
3,358,479	-		LRK54_RS15210	0.85	-0.2
3,358,479	-		LRK54_RS15210	0.85	+0.4
3,358,479	-		LRK54_RS15210	0.85	-0.3
3,358,479	-		LRK54_RS15210	0.85	+0.6
3,358,479	-		LRK54_RS15210	0.85	+0.6
3,358,479	-		LRK54_RS15210	0.85	-0.6
3,358,479	-		LRK54_RS15210	0.85	+0.8
3,358,479	-		LRK54_RS15210	0.85	+0.9
3,358,479	-		LRK54_RS15210	0.85	-0.5
3,358,479	-		LRK54_RS15210	0.85	+0.1
3,358,586	+		LRK54_RS15210	0.89	-0.4
3,358,586	+		LRK54_RS15210	0.89	-0.7
3,358,586	+		LRK54_RS15210	0.89	+1.6
3,358,586	+		LRK54_RS15210	0.89	+2.0
3,358,586	+		LRK54_RS15210	0.89	+1.1
3,358,586	+		LRK54_RS15210	0.89	+1.8
3,358,586	+		LRK54_RS15210	0.89	-0.3
3,358,587	-		LRK54_RS15210	0.89	-0.5
3,358,587	-		LRK54_RS15210	0.89	-0.9
3,358,587	-		LRK54_RS15210	0.89	+0.1
3,358,587	-		LRK54_RS15210	0.89	+1.1
3,358,587	-		LRK54_RS15210	0.89	+3.6
3,358,587	-		LRK54_RS15210	0.89	-1.6
3,358,587	-		LRK54_RS15210	0.89	-1.2
3,358,601	+		LRK54_RS15210	0.89	+0.7
3,358,601	+		LRK54_RS15210	0.89	-0.3
3,358,601	+		LRK54_RS15210	0.89	+0.6
3,358,601	+		LRK54_RS15210	0.89	-0.3
3,358,601	+		LRK54_RS15210	0.89	-0.2
3,358,601	+		LRK54_RS15210	0.89	-0.6
3,358,601	+		LRK54_RS15210	0.89	-0.1
3,358,601	+		LRK54_RS15210	0.89	-0.6
3,358,601	+		LRK54_RS15210	0.89	+0.1
3,358,602	-		LRK54_RS15210	0.89	-0.4
3,358,602	-		LRK54_RS15210	0.89	-1.4
3,358,602	-		LRK54_RS15210	0.89	+0.6
3,358,602	-		LRK54_RS15210	0.89	+0.0
3,358,602	-		LRK54_RS15210	0.89	+0.1
3,358,602	-		LRK54_RS15210	0.89	-0.2
3,358,602	-		LRK54_RS15210	0.89	-1.3
3,358,602	-		LRK54_RS15210	0.89	-0.4
3,358,602	-		LRK54_RS15210	0.89	+0.1
3,358,607	+		LRK54_RS15210	0.89	-2.7
3,358,607	+		LRK54_RS15210	0.89	+0.7
3,358,607	+		LRK54_RS15210	0.89	-0.7
3,358,607	+		LRK54_RS15210	0.89	-0.8
3,358,607	+		LRK54_RS15210	0.89	-1.5
3,358,607	+		LRK54_RS15210	0.89	-0.3
3,358,607	+		LRK54_RS15210	0.89	-0.7
3,358,607	+		LRK54_RS15210	0.89	+0.5
3,358,607	+		LRK54_RS15210	0.89	+0.1
3,358,607	+		LRK54_RS15210	0.89	+1.4
3,358,607	+		LRK54_RS15210	0.89	-1.6
3,358,607	+		LRK54_RS15210	0.89	+0.2
3,358,607	+		LRK54_RS15210	0.89	-0.2
3,358,607	+		LRK54_RS15210	0.89	-0.2
3,358,607	+		LRK54_RS15210	0.89	-1.4
3,358,607	+		LRK54_RS15210	0.89	-0.4
3,358,607	+		LRK54_RS15210	0.89	-0.7
3,358,607	+		LRK54_RS15210	0.89	+1.4
3,358,608	-		LRK54_RS15210	0.89	+2.7
3,358,608	-		LRK54_RS15210	0.89	-0.9
3,358,608	-		LRK54_RS15210	0.89	-1.0
3,358,608	-		LRK54_RS15210	0.89	-1.2
3,358,608	-		LRK54_RS15210	0.89	-0.4
3,358,608	-		LRK54_RS15210	0.89	-1.1
3,358,608	-		LRK54_RS15210	0.89	+0.4
3,358,608	-		LRK54_RS15210	0.89	-0.2
3,358,608	-		LRK54_RS15210	0.89	-2.5
3,358,608	-		LRK54_RS15210	0.89	-0.4
3,358,608	-		LRK54_RS15210	0.89	+0.4
3,358,608	-		LRK54_RS15210	0.89	+0.2
3,358,608	-		LRK54_RS15210	0.89	-0.6
3,358,608	-		LRK54_RS15210	0.89	+0.7
3,358,608	-		LRK54_RS15210	0.89	-0.4
3,358,608	-		LRK54_RS15210	0.89	+0.4
3,358,608	-		LRK54_RS15210	0.89	-2.1
3,358,742	+				+0.0
3,358,742	+				+1.8
3,358,742	+				-0.9
3,358,742	+				-1.5
3,358,742	+				+0.2
3,358,742	+				-0.7
3,358,742	+				+0.3
3,358,742	+				+0.7
3,358,742	+				-1.1
3,358,742	+				-0.3
3,358,742	+				-0.3
3,358,743	-				+1.1
3,358,743	-				-1.4
3,358,743	-				-0.7
3,358,743	-				+0.1
3,358,743	-				-0.8
3,358,743	-				+0.9
3,358,743	-				+0.0
3,358,743	-				+0.1
3,358,743	-				-0.1
3,358,743	-				-0.3
3,358,743	-				+2.9
3,358,743	-				+0.2
3,358,763	+				-1.6
3,358,763	+				+1.6
3,358,763	+				-0.6
3,358,764	-				+1.1
3,358,764	-				+0.4
3,358,784	+				-0.3
3,358,784	+				-1.1
3,358,784	+				+0.7
3,358,784	+				+0.4
3,358,784	+				-0.9
3,358,784	+				+2.4
3,358,784	+				-0.3
3,358,784	+				+2.4
3,358,784	+				-0.5
3,358,784	+				+1.2
3,358,784	+				+0.6
3,358,784	+				-0.5
3,358,784	+				-0.0
3,358,785	-				+0.6
3,358,785	-				-1.3
3,358,785	-				+0.8
3,358,785	-				+0.5
3,358,785	-				+0.3
3,358,785	-				-0.7
3,358,785	-				+0.4
3,358,785	-				-0.4
3,358,785	-				+1.1
3,358,785	-				+0.7
3,358,785	-				+2.1
3,358,785	-				+0.4
3,358,785	-				-0.5
3,358,785	-				-0.8
3,358,785	-				+0.1
3,358,785	-				+1.2
3,358,785	-				-1.4
3,358,932	-				+0.9
3,358,950	+				-1.0
3,358,950	+				-1.3
3,358,950	+				+3.1
3,358,950	+				-0.3
3,358,950	+				+0.8
3,358,950	+				-0.2
3,358,950	+				+1.1
3,358,950	+				-1.5
3,358,950	+				+0.3
3,358,951	-				+1.6
3,358,951	-				-0.2
3,358,951	-				-0.4
3,358,951	-				+0.6
3,358,951	-				-0.2
3,358,951	-				-0.1
3,358,951	-				-1.5
3,358,951	-				-1.8
3,358,951	-				-0.1
3,358,951	-				-0.5
3,358,951	-				-1.5
3,358,951	-				-1.7
3,358,952	+				-0.7
3,358,952	+				+0.3
3,358,952	+				-0.2
3,358,952	+				+0.4
3,358,952	+				+0.2
3,358,952	+				-0.2
3,358,952	+				+0.5
3,358,952	+				-2.0
3,358,952	+				+0.3
3,358,952	+				+0.6
3,358,952	+				+0.6
3,358,952	+				+0.8
3,358,952	+				+0.5
3,358,952	+				+0.3
3,358,952	+				+0.1
3,358,952	+				-0.5
3,358,952	+				+1.1
3,358,952	+				-1.2
3,358,952	+				-0.2
3,358,952	+				-0.4
3,358,952	+				-0.6
3,358,952	+				+0.6
3,358,952	+				-0.1
3,358,953	-				-0.0
3,358,953	-				-2.4
3,358,953	-				+0.4
3,358,953	-				-1.4
3,358,953	-				-0.5
3,358,953	-				-0.1
3,358,953	-				-0.4
3,358,953	-				+0.1
3,358,953	-				-0.0
3,358,953	-				+0.1
3,358,953	-				-0.4
3,358,953	-				-0.7
3,358,953	-				-0.1
3,358,953	-				-1.2
3,358,953	-				-0.2
3,358,953	-				-0.2
3,358,953	-				-2.7
3,358,953	-				+1.6
3,358,953	-				-0.6
3,358,953	-				+2.4
3,358,953	-				-1.2
3,358,953	-				+0.4
3,358,953	-				+2.0
3,358,953	-				-0.6
3,358,953	-				-0.6
3,358,973	+				-0.4
3,358,973	+				-0.7
3,358,973	+				+0.1
3,358,973	+				+0.1
3,358,974	-				+1.7
3,358,974	-				-1.1
3,358,974	-				-0.8
3,358,974	-				+1.1
3,358,974	-				-1.5
3,359,013	+				+1.4
3,359,013	+				-0.2
3,359,013	+				-0.1
3,359,013	+				-1.7
3,359,013	+				-1.5
3,359,013	+				-0.7
3,359,013	+				+0.1
3,359,013	+				+0.4
3,359,013	+				-0.2
3,359,013	+				+1.4
3,359,014	-				+0.4
3,359,014	-				-0.8
3,359,014	-				-0.9
3,359,014	-				+2.3
3,359,014	-				-0.4
3,359,014	-				+0.7
3,359,014	-				+1.8
3,359,014	-				-0.8
3,359,014	-				-0.5
3,359,014	-				-0.7
3,359,020	+				+0.1
3,359,020	+				-1.1
3,359,020	+				-0.8
3,359,020	+				-0.0
3,359,020	+				-1.0
3,359,021	-				+0.8
3,359,021	-				+4.0
3,359,021	-				-0.2
3,359,021	-				-1.9
3,359,021	-				-1.0
3,359,050	+				+1.0
3,359,051	-				+0.5
3,359,075	+				+0.5
3,359,075	+				-0.0
3,359,265	+		LRK54_RS15215	0.31	+0.6
3,359,265	+		LRK54_RS15215	0.31	-0.9
3,359,266	-		LRK54_RS15215	0.31	+0.6
3,359,266	-		LRK54_RS15215	0.31	+2.2
3,359,266	-		LRK54_RS15215	0.31	+0.8
3,359,266	-		LRK54_RS15215	0.31	+1.0
3,359,266	-		LRK54_RS15215	0.31	+0.2
3,359,376	+		LRK54_RS15215	0.49	+0.2
3,359,376	+		LRK54_RS15215	0.49	+0.1
3,359,376	+		LRK54_RS15215	0.49	+1.0
3,359,377	-		LRK54_RS15215	0.49	+0.3
3,359,377	-		LRK54_RS15215	0.49	-1.3
3,359,377	-		LRK54_RS15215	0.49	+0.1
3,359,377	-		LRK54_RS15215	0.49	-0.1
3,359,377	-		LRK54_RS15215	0.49	+0.8
3,359,377	-		LRK54_RS15215	0.49	-0.9
3,359,377	-		LRK54_RS15215	0.49	-0.3
3,359,736	+				+0.0
3,359,736	+				+0.4
3,360,507	+				+1.4
3,360,507	+				-0.4
3,360,508	-				-1.3