Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14490

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
3,218,243	+		LRK54_RS14485	0.43	+0.3
3,218,243	+		LRK54_RS14485	0.43	-0.5
3,218,243	+		LRK54_RS14485	0.43	-0.0
3,218,244	-		LRK54_RS14485	0.43	+2.1
3,218,244	-		LRK54_RS14485	0.43	-0.1
3,218,244	-		LRK54_RS14485	0.43	+0.3
3,218,244	-		LRK54_RS14485	0.43	-1.3
3,218,244	-		LRK54_RS14485	0.43	-0.3
3,218,244	-		LRK54_RS14485	0.43	+0.7
3,218,244	-		LRK54_RS14485	0.43	-0.4
3,218,244	-		LRK54_RS14485	0.43	+0.5
3,218,244	-		LRK54_RS14485	0.43	-0.1
3,218,435	+		LRK54_RS14485	0.57	-0.4
3,218,435	+		LRK54_RS14485	0.57	-0.8
3,218,435	+		LRK54_RS14485	0.57	+1.4
3,218,435	+		LRK54_RS14485	0.57	-0.3
3,218,435	+		LRK54_RS14485	0.57	+0.1
3,218,435	+		LRK54_RS14485	0.57	+0.3
3,218,435	+		LRK54_RS14485	0.57	-0.0
3,218,435	+		LRK54_RS14485	0.57	-1.5
3,218,435	+		LRK54_RS14485	0.57	+0.6
3,218,435	+		LRK54_RS14485	0.57	+0.4
3,218,435	+		LRK54_RS14485	0.57	+0.6
3,218,435	+		LRK54_RS14485	0.57	+0.0
3,218,435	+		LRK54_RS14485	0.57	+0.1
3,218,436	-		LRK54_RS14485	0.57	+1.0
3,218,436	-		LRK54_RS14485	0.57	-0.6
3,218,436	-		LRK54_RS14485	0.57	-0.1
3,218,436	-		LRK54_RS14485	0.57	-0.6
3,218,436	-		LRK54_RS14485	0.57	-0.5
3,218,436	-		LRK54_RS14485	0.57	+0.7
3,218,436	-		LRK54_RS14485	0.57	-1.3
3,218,450	+		LRK54_RS14485	0.58	-0.5
3,218,450	+		LRK54_RS14485	0.58	+1.4
3,218,450	+		LRK54_RS14485	0.58	-1.2
3,218,450	+		LRK54_RS14485	0.58	-0.1
3,218,450	+		LRK54_RS14485	0.58	-0.1
3,218,450	+		LRK54_RS14485	0.58	+0.8
3,218,450	+		LRK54_RS14485	0.58	+0.3
3,218,450	+		LRK54_RS14485	0.58	-0.1
3,218,450	+		LRK54_RS14485	0.58	-0.3
3,218,450	+		LRK54_RS14485	0.58	+0.4
3,218,450	+		LRK54_RS14485	0.58	+0.3
3,218,450	+		LRK54_RS14485	0.58	+2.8
3,218,450	+		LRK54_RS14485	0.58	+1.0
3,218,450	+		LRK54_RS14485	0.58	-0.5
3,218,450	+		LRK54_RS14485	0.58	+1.0
3,218,450	+		LRK54_RS14485	0.58	-0.8
3,218,450	+		LRK54_RS14485	0.58	+0.2
3,218,450	+		LRK54_RS14485	0.58	+0.3
3,218,450	+		LRK54_RS14485	0.58	+1.4
3,218,450	+		LRK54_RS14485	0.58	-0.2
3,218,450	+		LRK54_RS14485	0.58	+0.4
3,218,451	-		LRK54_RS14485	0.58	-1.3
3,218,451	-		LRK54_RS14485	0.58	-0.0
3,218,451	-		LRK54_RS14485	0.58	+0.3
3,218,451	-		LRK54_RS14485	0.58	+0.4
3,218,451	-		LRK54_RS14485	0.58	-0.0
3,218,451	-		LRK54_RS14485	0.58	+0.7
3,218,451	-		LRK54_RS14485	0.58	+0.5
3,218,451	-		LRK54_RS14485	0.58	+1.1
3,218,451	-		LRK54_RS14485	0.58	+0.9
3,218,451	-		LRK54_RS14485	0.58	+0.1
3,218,451	-		LRK54_RS14485	0.58	+1.0
3,218,451	-		LRK54_RS14485	0.58	+0.3
3,218,451	-		LRK54_RS14485	0.58	+1.7
3,218,451	-		LRK54_RS14485	0.58	-1.0
3,218,451	-		LRK54_RS14485	0.58	-0.1
3,218,451	-		LRK54_RS14485	0.58	+0.1
3,218,451	-		LRK54_RS14485	0.58	+0.6
3,218,451	-		LRK54_RS14485	0.58	+0.8
3,218,747	+		LRK54_RS14485	0.80	+0.8
3,218,747	+		LRK54_RS14485	0.80	+0.0
3,218,747	+		LRK54_RS14485	0.80	+1.3
3,218,747	+		LRK54_RS14485	0.80	+0.2
3,218,747	+		LRK54_RS14485	0.80	+0.6
3,218,748	-		LRK54_RS14485	0.80	-0.6
3,218,748	-		LRK54_RS14485	0.80	-0.2
3,218,748	-		LRK54_RS14485	0.80	+1.1
3,218,748	-		LRK54_RS14485	0.80	+0.1
3,218,748	-		LRK54_RS14485	0.80	+0.1
3,218,748	-		LRK54_RS14485	0.80	+1.0
3,218,765	+		LRK54_RS14485	0.81	+0.5
3,218,765	+		LRK54_RS14485	0.81	-0.5
3,218,765	+		LRK54_RS14485	0.81	+0.4
3,218,765	+		LRK54_RS14485	0.81	-0.2
3,218,765	+		LRK54_RS14485	0.81	-1.1
3,218,765	+		LRK54_RS14485	0.81	+0.5
3,218,765	+		LRK54_RS14485	0.81	+0.0
3,218,765	+		LRK54_RS14485	0.81	-0.3
3,218,765	+		LRK54_RS14485	0.81	+0.4
3,218,765	+		LRK54_RS14485	0.81	+0.3
3,218,765	+		LRK54_RS14485	0.81	-0.2
3,218,765	+		LRK54_RS14485	0.81	+0.4
3,218,765	+		LRK54_RS14485	0.81	+0.6
3,218,765	+		LRK54_RS14485	0.81	+0.3
3,218,766	-		LRK54_RS14485	0.81	-0.3
3,218,766	-		LRK54_RS14485	0.81	+0.8
3,218,771	+		LRK54_RS14485	0.81	+0.5
3,218,771	+		LRK54_RS14485	0.81	-0.2
3,218,771	+		LRK54_RS14485	0.81	+0.5
3,218,771	+		LRK54_RS14485	0.81	+0.5
3,218,771	+		LRK54_RS14485	0.81	-2.0
3,218,771	+		LRK54_RS14485	0.81	+0.7
3,218,771	+		LRK54_RS14485	0.81	+0.2
3,218,771	+		LRK54_RS14485	0.81	+0.3
3,218,771	+		LRK54_RS14485	0.81	+2.7
3,218,771	+		LRK54_RS14485	0.81	-0.1
3,218,771	+		LRK54_RS14485	0.81	+0.5
3,218,771	+		LRK54_RS14485	0.81	-0.3
3,218,771	+		LRK54_RS14485	0.81	+1.4
3,218,771	+		LRK54_RS14485	0.81	+0.9
3,218,771	+		LRK54_RS14485	0.81	-0.5
3,218,771	+		LRK54_RS14485	0.81	+0.2
3,218,771	+		LRK54_RS14485	0.81	-0.2
3,218,771	+		LRK54_RS14485	0.81	+0.9
3,218,771	+		LRK54_RS14485	0.81	-1.0
3,218,771	+		LRK54_RS14485	0.81	-0.1
3,218,771	+		LRK54_RS14485	0.81	+0.9
3,218,771	+		LRK54_RS14485	0.81	+1.7
3,218,771	+		LRK54_RS14485	0.81	+0.6
3,218,771	+		LRK54_RS14485	0.81	-0.0
3,218,772	-		LRK54_RS14485	0.81	-0.1
3,218,772	-		LRK54_RS14485	0.81	+0.2
3,218,772	-		LRK54_RS14485	0.81	-0.0
3,218,772	-		LRK54_RS14485	0.81	+1.3
3,218,772	-		LRK54_RS14485	0.81	+0.9
3,218,772	-		LRK54_RS14485	0.81	-0.1
3,218,772	-		LRK54_RS14485	0.81	-0.2
3,218,772	-		LRK54_RS14485	0.81	+0.4
3,218,772	-		LRK54_RS14485	0.81	-0.2
3,218,772	-		LRK54_RS14485	0.81	-0.0
3,218,772	-		LRK54_RS14485	0.81	+0.7
3,218,772	-		LRK54_RS14485	0.81	+0.6
3,218,772	-		LRK54_RS14485	0.81	+0.7
3,218,772	-		LRK54_RS14485	0.81	+0.8
3,218,772	-		LRK54_RS14485	0.81	-0.0
3,218,772	-		LRK54_RS14485	0.81	+0.2
3,218,772	-		LRK54_RS14485	0.81	+0.3
3,218,772	-		LRK54_RS14485	0.81	+1.0
3,218,772	-		LRK54_RS14485	0.81	+0.4
3,218,795	+		LRK54_RS14485	0.83	+0.1
3,218,795	+		LRK54_RS14485	0.83	+0.5
3,218,796	-		LRK54_RS14485	0.83	-0.0
3,218,796	-		LRK54_RS14485	0.83	+0.3
3,218,849	+		LRK54_RS14485	0.87	+0.1
3,218,849	+		LRK54_RS14485	0.87	-0.2
3,218,849	+		LRK54_RS14485	0.87	+0.9
3,218,849	+		LRK54_RS14485	0.87	+0.2
3,218,849	+		LRK54_RS14485	0.87	-0.4
3,218,850	-		LRK54_RS14485	0.87	-0.2
3,218,850	-		LRK54_RS14485	0.87	+0.8
3,218,850	-		LRK54_RS14485	0.87	+0.4
3,218,850	-		LRK54_RS14485	0.87	-0.0
3,218,850	-		LRK54_RS14485	0.87	-0.9
3,218,850	-		LRK54_RS14485	0.87	+0.4
3,218,858	+		LRK54_RS14485	0.88	-0.3
3,218,858	+		LRK54_RS14485	0.88	-0.1
3,218,858	+		LRK54_RS14485	0.88	+0.6
3,218,858	+		LRK54_RS14485	0.88	-0.0
3,218,858	+		LRK54_RS14485	0.88	+0.3
3,218,858	+		LRK54_RS14485	0.88	+0.1
3,218,858	+		LRK54_RS14485	0.88	-0.6
3,218,858	+		LRK54_RS14485	0.88	+0.4
3,218,858	+		LRK54_RS14485	0.88	-0.3
3,218,858	+		LRK54_RS14485	0.88	-0.4
3,218,858	+		LRK54_RS14485	0.88	+0.1
3,218,859	-		LRK54_RS14485	0.88	-0.8
3,218,859	-		LRK54_RS14485	0.88	-0.2
3,218,859	-		LRK54_RS14485	0.88	+0.4
3,218,859	-		LRK54_RS14485	0.88	-0.4
3,218,859	-		LRK54_RS14485	0.88	-2.0
3,218,859	-		LRK54_RS14485	0.88	+0.9
3,218,859	-		LRK54_RS14485	0.88	+0.4
3,218,859	-		LRK54_RS14485	0.88	+0.7
3,218,859	-		LRK54_RS14485	0.88	+1.4
3,218,859	-		LRK54_RS14485	0.88	+0.2
3,218,859	-		LRK54_RS14485	0.88	+0.1
3,218,859	-		LRK54_RS14485	0.88	+0.2
3,218,859	-		LRK54_RS14485	0.88	+0.3
3,218,859	-		LRK54_RS14485	0.88	+0.5
3,218,859	-		LRK54_RS14485	0.88	+0.4
3,218,859	-		LRK54_RS14485	0.88	+1.0
3,218,859	-		LRK54_RS14485	0.88	+0.0
3,218,859	-		LRK54_RS14485	0.88	+0.4
3,218,859	-		LRK54_RS14485	0.88	+0.8
3,218,859	-		LRK54_RS14485	0.88	+1.1
3,218,859	-		LRK54_RS14485	0.88	+0.6
3,219,019	+				-1.5
3,219,019	+				+0.1
3,219,023	+				-0.4
3,219,023	+				+0.4
3,219,023	+				-2.0
3,219,023	+				+0.5
3,219,023	+				-0.2
3,219,023	+				-1.4
3,219,023	+				+0.2
3,219,023	+				-0.2
3,219,023	+				-1.4
3,219,023	+				+0.4
3,219,023	+				+0.2
3,219,023	+				+0.5
3,219,023	+				+0.0
3,219,023	+				+0.7
3,219,024	-				-0.1
3,219,024	-				+0.0
3,219,107	+				+0.2
3,219,107	+				+1.2
3,219,107	+				-0.4
3,219,107	+				-0.9
3,219,107	+				+0.1
3,219,107	+				-0.4
3,219,107	+				+0.1
3,219,107	+				-0.7
3,219,107	+				-0.6
3,219,107	+				-0.1
3,219,107	+				-0.9
3,219,107	+				-0.3
3,219,108	-				+1.1
3,219,108	-				-0.5
3,219,108	-				-1.0
3,219,163	+				+0.4
3,219,219	+				-0.3
3,219,219	+				+0.2
3,219,219	+				+0.3
3,219,219	+				+0.7
3,219,219	+				-0.7
3,219,219	+				+0.2
3,219,219	+				+1.0
3,219,220	-				+1.0
3,219,220	-				-2.0
3,219,357	-		LRK54_RS14490	0.18	-0.9
3,219,420	+		LRK54_RS14490	0.24	+0.1
3,219,421	-		LRK54_RS14490	0.25	+1.3
3,219,421	-		LRK54_RS14490	0.25	+0.8
3,219,444	+		LRK54_RS14490	0.27	+0.4
3,219,445	-		LRK54_RS14490	0.27	-1.1
3,219,445	-		LRK54_RS14490	0.27	+1.1
3,219,445	-		LRK54_RS14490	0.27	-0.1
3,219,858	+		LRK54_RS14490	0.71	+0.5
3,220,172	+				+1.0
3,220,172	+				+0.7
3,220,172	+				-0.0
3,220,172	+				+0.6
3,220,172	+				+1.8
3,220,172	+				+0.2
3,220,172	+				-0.0
3,220,172	+				+0.2
3,220,172	+				+1.0
3,220,172	+				+0.4
3,220,172	+				+0.3
3,220,172	+				+0.9
3,220,173	-				+0.7
3,220,173	-				+0.1
3,220,173	-				-0.5
3,220,173	-				+0.4
3,220,173	-				-0.0
3,220,173	-				+0.4
3,220,173	-				-1.0
3,220,173	-				+0.2
3,220,173	-				+1.2
3,220,173	-				+0.1
3,220,193	+				+0.5
3,220,193	+				-0.3
3,220,193	+				+0.7
3,220,193	+				+0.8
3,220,193	+				-0.2
3,220,193	+				-0.9
3,220,193	+				+1.0
3,220,193	+				+0.5
3,220,193	+				+1.0
3,220,193	+				+0.6
3,220,193	+				+0.4
3,220,193	+				+0.3
3,220,193	+				-0.8
3,220,193	+				+1.4
3,220,193	+				+0.6
3,220,193	+				+0.1
3,220,193	+				+0.2
3,220,194	-				+0.9
3,220,194	-				-1.0
3,220,194	-				+0.3
3,220,194	-				-0.9
3,220,194	-				+0.6
3,220,194	-				-0.1
3,220,194	-				+0.9
3,220,194	-				+0.3
3,220,194	-				+0.0
3,220,194	-				-0.3
3,220,194	-				+0.9
3,220,194	-				+3.1
3,220,241	+		LRK54_RS14495	0.15	+0.2
3,220,241	+		LRK54_RS14495	0.15	+0.0
3,220,241	+		LRK54_RS14495	0.15	+1.3
3,220,241	+		LRK54_RS14495	0.15	+0.3
3,220,241	+		LRK54_RS14495	0.15	+0.8
3,220,242	-		LRK54_RS14495	0.15	+0.9
3,220,242	-		LRK54_RS14495	0.15	+0.6
3,220,242	-		LRK54_RS14495	0.15	+0.9
3,220,242	-		LRK54_RS14495	0.15	-0.1
3,220,242	-		LRK54_RS14495	0.15	+1.2
3,220,242	-		LRK54_RS14495	0.15	+0.1
3,220,242	-		LRK54_RS14495	0.15	+0.2
3,220,242	-		LRK54_RS14495	0.15	+0.1
3,220,242	-		LRK54_RS14495	0.15	+0.5
3,220,242	-		LRK54_RS14495	0.15	-0.3
3,220,256	+		LRK54_RS14495	0.17	+0.3
3,220,310	+		LRK54_RS14495	0.24	+0.6
3,220,310	+		LRK54_RS14495	0.24	-0.6
3,220,310	+		LRK54_RS14495	0.24	+0.4
3,220,310	+		LRK54_RS14495	0.24	+0.5
3,220,310	+		LRK54_RS14495	0.24	+0.8
3,220,310	+		LRK54_RS14495	0.24	+1.1
3,220,310	+		LRK54_RS14495	0.24	+0.3
3,220,310	+		LRK54_RS14495	0.24	+2.2
3,220,310	+		LRK54_RS14495	0.24	+0.7
3,220,310	+		LRK54_RS14495	0.24	-0.2
3,220,310	+		LRK54_RS14495	0.24	+0.6
3,220,310	+		LRK54_RS14495	0.24	+0.9
3,220,310	+		LRK54_RS14495	0.24	+0.1
3,220,310	+		LRK54_RS14495	0.24	-0.2
3,220,311	-		LRK54_RS14495	0.25	+3.0
3,220,311	-		LRK54_RS14495	0.25	+0.9
3,220,311	-		LRK54_RS14495	0.25	+0.5
3,220,311	-		LRK54_RS14495	0.25	+0.5
3,220,311	-		LRK54_RS14495	0.25	+0.6
3,220,311	-		LRK54_RS14495	0.25	+0.9
3,220,311	-		LRK54_RS14495	0.25	+0.4
3,220,311	-		LRK54_RS14495	0.25	+0.8
3,220,311	-		LRK54_RS14495	0.25	+0.3
3,220,311	-		LRK54_RS14495	0.25	-0.5
3,220,311	-		LRK54_RS14495	0.25	-0.1
3,220,311	-		LRK54_RS14495	0.25	-0.5
3,220,311	-		LRK54_RS14495	0.25	+0.2
3,220,311	-		LRK54_RS14495	0.25	+0.1
3,220,311	-		LRK54_RS14495	0.25	+0.7
3,220,313	-		LRK54_RS14495	0.25	+0.3
3,220,496	+		LRK54_RS14495	0.50	+0.1
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