Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14480

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
3,215,876	+		LRK54_RS14475	0.34	+0.8
3,215,876	+		LRK54_RS14475	0.34	-0.9
3,215,876	+		LRK54_RS14475	0.34	+0.1
3,215,877	-		LRK54_RS14475	0.34	-0.0
3,215,877	-		LRK54_RS14475	0.34	-0.0
3,215,877	-		LRK54_RS14475	0.34	+0.8
3,215,877	-		LRK54_RS14475	0.34	-0.3
3,215,918	+		LRK54_RS14475	0.38	+0.8
3,215,918	+		LRK54_RS14475	0.38	+1.4
3,215,918	+		LRK54_RS14475	0.38	+0.6
3,215,918	+		LRK54_RS14475	0.38	-1.0
3,215,918	+		LRK54_RS14475	0.38	+1.9
3,215,918	+		LRK54_RS14475	0.38	-0.4
3,215,918	+		LRK54_RS14475	0.38	+0.9
3,215,918	+		LRK54_RS14475	0.38	-1.8
3,215,918	+		LRK54_RS14475	0.38	+0.7
3,215,918	+		LRK54_RS14475	0.38	+1.6
3,215,918	+		LRK54_RS14475	0.38	-0.8
3,215,918	+		LRK54_RS14475	0.38	-1.5
3,215,918	+		LRK54_RS14475	0.38	-1.1
3,215,918	+		LRK54_RS14475	0.38	+0.8
3,215,918	+		LRK54_RS14475	0.38	-0.0
3,215,918	+		LRK54_RS14475	0.38	+0.4
3,215,918	+		LRK54_RS14475	0.38	+0.5
3,215,918	+		LRK54_RS14475	0.38	-1.6
3,215,918	+		LRK54_RS14475	0.38	+1.0
3,215,919	-		LRK54_RS14475	0.38	+0.5
3,215,919	-		LRK54_RS14475	0.38	+0.3
3,215,919	-		LRK54_RS14475	0.38	+2.4
3,215,919	-		LRK54_RS14475	0.38	-0.1
3,215,919	-		LRK54_RS14475	0.38	-0.4
3,215,919	-		LRK54_RS14475	0.38	+0.1
3,215,919	-		LRK54_RS14475	0.38	-0.1
3,215,919	-		LRK54_RS14475	0.38	+0.8
3,215,919	-		LRK54_RS14475	0.38	+0.3
3,215,919	-		LRK54_RS14475	0.38	+0.5
3,215,919	-		LRK54_RS14475	0.38	+0.4
3,215,919	-		LRK54_RS14475	0.38	+0.7
3,215,919	-		LRK54_RS14475	0.38	+0.7
3,215,919	-		LRK54_RS14475	0.38	+0.3
3,215,919	-		LRK54_RS14475	0.38	-0.4
3,215,919	-		LRK54_RS14475	0.38	-0.1
3,215,919	-		LRK54_RS14475	0.38	-0.9
3,215,919	-		LRK54_RS14475	0.38	+1.9
3,215,919	-		LRK54_RS14475	0.38	+1.4
3,215,919	-		LRK54_RS14475	0.38	-0.3
3,215,919	-		LRK54_RS14475	0.38	-0.4
3,215,919	-		LRK54_RS14475	0.38	-0.2
3,216,440	+		LRK54_RS14475	0.80	-0.9
3,216,441	-		LRK54_RS14475	0.80	+0.1
3,216,441	-		LRK54_RS14475	0.80	+0.2
3,216,441	-		LRK54_RS14475	0.80	+0.5
3,216,680	+				+0.3
3,216,680	+				-0.8
3,216,681	-				+1.1
3,216,681	-				-0.4
3,216,758	+				+0.8
3,216,758	+				+1.1
3,216,758	+				+0.1
3,216,758	+				+0.4
3,216,758	+				+0.5
3,216,758	+				-2.1
3,216,758	+				+1.3
3,216,758	+				+2.4
3,216,758	+				+1.1
3,216,758	+				+1.4
3,216,758	+				+0.3
3,216,758	+				+0.1
3,216,758	+				-0.0
3,216,758	+				-0.9
3,216,758	+				-0.3
3,216,758	+				-1.9
3,216,758	+				-0.8
3,216,759	-				-0.2
3,216,759	-				+0.2
3,216,759	-				+1.0
3,216,759	-				-0.4
3,216,759	-				+0.4
3,216,759	-				+0.5
3,216,759	-				-2.0
3,216,759	-				-0.0
3,216,759	-				+0.8
3,216,759	-				+0.4
3,216,759	-				+0.3
3,216,759	-				-1.1
3,216,759	-				+0.2
3,216,764	+				+1.8
3,216,764	+				+0.6
3,216,764	+				-0.0
3,216,764	+				-0.1
3,216,764	+				+1.4
3,216,765	-				-0.9
3,216,765	-				+1.0
3,216,765	-				-0.1
3,216,765	-				+1.0
3,216,765	-				+1.0
3,216,765	-				+0.6
3,217,091	+		LRK54_RS14480	0.47	-0.9
3,217,091	+		LRK54_RS14480	0.47	+0.2
3,217,091	+		LRK54_RS14480	0.47	+0.3
3,217,092	-		LRK54_RS14480	0.47	+0.1
3,217,092	-		LRK54_RS14480	0.47	-0.7
3,217,092	-		LRK54_RS14480	0.47	+1.3
3,217,292	+		LRK54_RS14480	0.78	+0.1
3,217,292	+		LRK54_RS14480	0.78	+0.3
3,217,292	+		LRK54_RS14480	0.78	+0.4
3,217,293	-		LRK54_RS14480	0.78	-0.1
3,217,293	-		LRK54_RS14480	0.78	-0.3
3,217,305	-		LRK54_RS14480	0.80	+0.3
3,217,360	+		LRK54_RS14480	0.89	+0.1
3,217,360	+		LRK54_RS14480	0.89	+1.4
3,217,360	+		LRK54_RS14480	0.89	+0.7
3,217,360	+		LRK54_RS14480	0.89	+0.1
3,217,360	+		LRK54_RS14480	0.89	+0.3
3,217,361	-		LRK54_RS14480	0.89	+0.1
3,217,361	-		LRK54_RS14480	0.89	-0.0
3,217,505	-				-0.8
3,217,527	+				-0.0
3,217,527	+				+0.9
3,217,527	+				+1.4
3,217,527	+				+0.1
3,217,527	+				+1.2
3,217,527	+				+0.3
3,217,527	+				-0.6
3,217,527	+				-0.9
3,217,527	+				-1.7
3,217,527	+				+2.1
3,217,527	+				+0.7
3,217,527	+				-0.2
3,217,527	+				+0.9
3,217,527	+				-1.2
3,217,527	+				+0.2
3,217,527	+				+0.1
3,217,527	+				+0.4
3,217,527	+				-1.1
3,217,527	+				+1.4
3,217,527	+				+0.5
3,217,527	+				+0.2
3,217,527	+				-0.3
3,217,527	+				+0.5
3,217,527	+				-1.5
3,217,527	+				-1.0
3,217,527	+				+0.3
3,217,527	+				+0.5
3,217,527	+				+0.0
3,217,527	+				+0.1
3,217,527	+				-0.6
3,217,527	+				+0.1
3,217,528	-				+0.5
3,217,528	-				-0.2
3,217,528	-				-0.1
3,217,528	-				+0.5
3,217,528	-				+0.3
3,217,528	-				-0.6
3,217,528	-				+0.5
3,217,528	-				-1.1
3,217,528	-				-0.9
3,217,528	-				-0.0
3,217,528	-				-0.3
3,217,528	-				-0.4
3,217,528	-				-1.0
3,217,528	-				+0.3
3,217,528	-				-0.9
3,217,528	-				-0.5
3,217,528	-				+0.1
3,217,618	+				-0.6
3,217,618	+				-0.3
3,217,618	+				-1.4
3,217,618	+				-0.4
3,217,618	+				+0.2
3,217,618	+				-0.2
3,217,618	+				-0.4
3,217,618	+				-0.9
3,217,618	+				-0.5
3,217,618	+				+0.2
3,217,618	+				+0.1
3,217,618	+				-0.6
3,217,618	+				-0.3
3,217,618	+				-1.2
3,217,618	+				-0.1
3,217,618	+				+0.2
3,217,618	+				-0.4
3,217,618	+				+0.3
3,217,618	+				-0.0
3,217,618	+				+0.6
3,217,618	+				-0.2
3,217,618	+				-1.5
3,217,618	+				+1.5
3,217,618	+				-0.5
3,217,618	+				-0.5
3,217,618	+				+0.1
3,217,618	+				-0.8
3,217,618	+				-0.0
3,217,618	+				+0.9
3,217,618	+				+0.8
3,217,618	+				-0.2
3,217,618	+				-2.0
3,217,618	+				+0.0
3,217,618	+				-0.0
3,217,618	+				+0.1
3,217,618	+				+1.4
3,217,618	+				+0.1
3,217,618	+				-0.5
3,217,618	+				+0.5
3,217,618	+				+0.3
3,217,618	+				+0.1
3,217,619	-				-0.6
3,217,619	-				+0.4
3,217,619	-				-1.8
3,217,619	-				+1.7
3,217,619	-				+0.4
3,217,619	-				+0.4
3,217,619	-				-1.8
3,217,619	-				-1.2
3,217,619	-				-2.2
3,217,619	-				-2.3
3,217,619	-				-0.7
3,217,619	-				-1.3
3,217,619	-				+0.1
3,217,619	-				+0.4
3,217,622	+				+0.5
3,217,622	+				+0.6
3,217,622	+				+1.1
3,217,622	+				-0.7
3,217,622	+				+0.1
3,217,622	+				-0.1
3,217,622	+				+0.1
3,217,622	+				-0.3
3,217,622	+				+0.4
3,217,622	+				-0.5
3,217,622	+				+0.6
3,217,622	+				+1.2
3,217,622	+				+0.5
3,217,622	+				+1.0
3,217,622	+				+0.3
3,217,622	+				+2.1
3,217,622	+				+0.7
3,217,622	+				+1.5
3,217,622	+				+0.9
3,217,622	+				+0.4
3,217,622	+				+0.5
3,217,622	+				+0.1
3,217,622	+				-1.5
3,217,622	+				-0.5
3,217,622	+				+0.5
3,217,622	+				+0.7
3,217,622	+				+0.4
3,217,622	+				+1.3
3,217,622	+				-0.5
3,217,622	+				+0.2
3,217,622	+				-0.4
3,217,622	+				-0.2
3,217,622	+				-1.4
3,217,622	+				+0.2
3,217,622	+				-0.4
3,217,622	+				-1.0
3,217,622	+				+1.9
3,217,622	+				-0.4
3,217,622	+				-0.2
3,217,622	+				+0.7
3,217,622	+				-0.5
3,217,622	+				+0.1
3,217,622	+				+0.6
3,217,622	+				-0.9
3,217,622	+				+0.1
3,217,622	+				+1.4
3,217,622	+				+0.6
3,217,622	+				-0.3
3,217,622	+				-1.2
3,217,622	+				-0.3
3,217,622	+				+0.6
3,217,622	+				-1.9
3,217,622	+				-1.1
3,217,622	+				-1.5
3,217,622	+				+1.8
3,217,622	+				-0.9
3,217,622	+				+0.3
3,217,622	+				-0.0
3,217,623	-				+0.7
3,217,623	-				-0.7
3,217,623	-				+1.7
3,217,623	-				+0.6
3,217,623	-				-0.6
3,217,623	-				+0.6
3,217,623	-				-0.2
3,217,623	-				-0.9
3,217,623	-				-1.1
3,217,623	-				-0.3
3,217,623	-				-1.2
3,217,623	-				-1.3
3,217,623	-				-0.2
3,217,623	-				-0.5
3,217,623	-				-0.4
3,217,623	-				-1.6
3,217,623	-				-1.2
3,217,626	+				+0.1
3,217,626	+				+0.7
3,217,626	+				+0.6
3,217,626	+				+0.5
3,217,626	+				+0.1
3,217,626	+				+0.6
3,217,626	+				+0.0
3,217,626	+				+1.0
3,217,626	+				+0.1
3,217,626	+				+0.4
3,217,626	+				-1.0
3,217,626	+				+0.3
3,217,626	+				-0.4
3,217,627	-				-0.6
3,217,627	-				-2.0
3,217,627	-				-0.4
3,217,627	-				-0.6
3,217,627	-				-1.6
3,217,627	-				-1.9
3,217,633	+				-0.1
3,217,633	+				-0.9
3,217,633	+				+0.1
3,217,634	-				+1.7
3,217,790	+				+0.9
3,217,790	+				-0.3
3,217,791	-				-0.5
3,217,791	-				-0.2
3,217,791	-				-0.2
3,217,808	+		LRK54_RS14485	0.11	+0.2
3,217,808	+		LRK54_RS14485	0.11	-0.3
3,217,808	+		LRK54_RS14485	0.11	-0.6
3,217,826	+		LRK54_RS14485	0.12	-0.6
3,217,826	+		LRK54_RS14485	0.12	-2.4
3,217,883	+		LRK54_RS14485	0.16	-1.2
3,217,883	+		LRK54_RS14485	0.16	-1.2
3,217,884	-		LRK54_RS14485	0.17	-2.7
3,218,111	+		LRK54_RS14485	0.33	-1.5
3,218,111	+		LRK54_RS14485	0.33	-1.4
3,218,111	+		LRK54_RS14485	0.33	+0.1
3,218,111	+		LRK54_RS14485	0.33	-0.4
3,218,112	-		LRK54_RS14485	0.33	-0.6
3,218,112	-		LRK54_RS14485	0.33	-0.7
3,218,112	-		LRK54_RS14485	0.33	+2.4
3,218,123	+		LRK54_RS14485	0.34	-1.7
3,218,123	+		LRK54_RS14485	0.34	-0.2
3,218,159	+		LRK54_RS14485	0.37	-0.6
3,218,159	+		LRK54_RS14485	0.37	+1.4
3,218,159	+		LRK54_RS14485	0.37	-0.6
3,218,159	+		LRK54_RS14485	0.37	-0.4
3,218,159	+		LRK54_RS14485	0.37	-0.1
3,218,159	+		LRK54_RS14485	0.37	-2.9
3,218,159	+		LRK54_RS14485	0.37	-0.3
3,218,160	-		LRK54_RS14485	0.37	-0.4
3,218,160	-		LRK54_RS14485	0.37	-1.6
3,218,160	-		LRK54_RS14485	0.37	-0.4
3,218,160	-		LRK54_RS14485	0.37	-2.7
3,218,160	-		LRK54_RS14485	0.37	-1.5
3,218,160	-		LRK54_RS14485	0.37	+0.4
3,218,243	+		LRK54_RS14485	0.43	+0.3
3,218,243	+		LRK54_RS14485	0.43	-0.5
3,218,243	+		LRK54_RS14485	0.43	-0.0
3,218,244	-		LRK54_RS14485	0.43	+2.1
3,218,244	-		LRK54_RS14485	0.43	-0.1
3,218,244	-		LRK54_RS14485	0.43	+0.3
3,218,244	-		LRK54_RS14485	0.43	-1.3
3,218,244	-		LRK54_RS14485	0.43	-0.3
3,218,244	-		LRK54_RS14485	0.43	+0.7
3,218,244	-		LRK54_RS14485	0.43	-0.4
3,218,244	-		LRK54_RS14485	0.43	+0.5
3,218,244	-		LRK54_RS14485	0.43	-0.1