Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14150

Experiment: R2A pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS14140 and LRK54_RS14145 are separated by 4 nucleotidesLRK54_RS14145 and LRK54_RS14150 overlap by 4 nucleotidesLRK54_RS14150 and LRK54_RS14155 are separated by 38 nucleotidesLRK54_RS14155 and LRK54_RS14160 are separated by 120 nucleotides LRK54_RS14140: LRK54_RS14140 - cytochrome b/b6 domain-containing protein, at 3,152,878 to 3,153,474 _RS14140 LRK54_RS14145: LRK54_RS14145 - response regulator transcription factor, at 3,153,479 to 3,154,153 _RS14145 LRK54_RS14150: LRK54_RS14150 - ATP-binding protein, at 3,154,150 to 3,155,529 _RS14150 LRK54_RS14155: LRK54_RS14155 - OsmC family protein, at 3,155,568 to 3,155,990 _RS14155 LRK54_RS14160: LRK54_RS14160 - cytochrome c, at 3,156,111 to 3,156,596 _RS14160 Position (kb) 3154 3155 3156Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3153.283 kb on + strand, within LRK54_RS14140at 3153.283 kb on + strand, within LRK54_RS14140at 3153.283 kb on + strand, within LRK54_RS14140at 3153.284 kb on - strand, within LRK54_RS14140at 3153.326 kb on + strand, within LRK54_RS14140at 3153.327 kb on - strand, within LRK54_RS14140at 3153.343 kb on + strand, within LRK54_RS14140at 3153.343 kb on + strand, within LRK54_RS14140at 3153.344 kb on - strand, within LRK54_RS14140at 3153.551 kb on + strand, within LRK54_RS14145at 3153.611 kb on + strand, within LRK54_RS14145at 3153.611 kb on + strand, within LRK54_RS14145at 3153.611 kb on + strand, within LRK54_RS14145at 3153.611 kb on + strand, within LRK54_RS14145at 3153.611 kb on + strand, within LRK54_RS14145at 3153.611 kb on + strand, within LRK54_RS14145at 3153.611 kb on + strand, within LRK54_RS14145at 3153.612 kb on - strand, within LRK54_RS14145at 3153.612 kb on - strand, within LRK54_RS14145at 3153.612 kb on - strand, within LRK54_RS14145at 3153.770 kb on + strand, within LRK54_RS14145at 3153.770 kb on + strand, within LRK54_RS14145at 3153.770 kb on + strand, within LRK54_RS14145at 3153.770 kb on + strand, within LRK54_RS14145at 3153.770 kb on + strand, within LRK54_RS14145at 3153.770 kb on + strand, within LRK54_RS14145at 3153.770 kb on + strand, within LRK54_RS14145at 3153.770 kb on + strand, within LRK54_RS14145at 3153.770 kb on + strand, within LRK54_RS14145at 3153.770 kb on + strand, within LRK54_RS14145at 3153.770 kb on + strand, within LRK54_RS14145at 3153.770 kb on + strand, within LRK54_RS14145at 3153.770 kb on + strand, within LRK54_RS14145at 3153.771 kb on - strand, within LRK54_RS14145at 3153.771 kb on - strand, within LRK54_RS14145at 3153.771 kb on - strand, within LRK54_RS14145at 3153.771 kb on - strand, within LRK54_RS14145at 3153.771 kb on - strand, within LRK54_RS14145at 3153.771 kb on - strand, within LRK54_RS14145at 3153.771 kb on - strand, within LRK54_RS14145at 3153.771 kb on - strand, within LRK54_RS14145at 3153.941 kb on + strand, within LRK54_RS14145at 3153.941 kb on + strand, within LRK54_RS14145at 3153.942 kb on - strand, within LRK54_RS14145at 3153.942 kb on - strand, within LRK54_RS14145at 3153.942 kb on - strand, within LRK54_RS14145at 3153.942 kb on - strand, within LRK54_RS14145at 3153.983 kb on + strand, within LRK54_RS14145at 3153.984 kb on - strand, within LRK54_RS14145at 3153.984 kb on - strand, within LRK54_RS14145at 3154.013 kb on + strand, within LRK54_RS14145at 3154.013 kb on + strand, within LRK54_RS14145at 3154.013 kb on + strand, within LRK54_RS14145at 3154.013 kb on + strand, within LRK54_RS14145at 3154.099 kb on + strandat 3154.099 kb on + strandat 3154.099 kb on + strandat 3154.099 kb on + strandat 3154.100 kb on - strandat 3154.100 kb on - strandat 3154.100 kb on - strandat 3154.100 kb on - strandat 3154.100 kb on - strandat 3154.100 kb on - strandat 3154.100 kb on - strandat 3154.100 kb on - strandat 3154.118 kb on + strandat 3154.119 kb on - strandat 3154.524 kb on - strand, within LRK54_RS14150at 3154.552 kb on + strand, within LRK54_RS14150at 3154.552 kb on + strand, within LRK54_RS14150at 3154.552 kb on + strand, within LRK54_RS14150at 3154.553 kb on - strand, within LRK54_RS14150at 3154.553 kb on - strand, within LRK54_RS14150at 3154.553 kb on - strand, within LRK54_RS14150at 3154.553 kb on - strand, within LRK54_RS14150at 3154.553 kb on - strand, within LRK54_RS14150at 3154.664 kb on + strand, within LRK54_RS14150at 3155.513 kb on + strandat 3155.513 kb on + strandat 3155.513 kb on + strandat 3155.513 kb on + strandat 3155.513 kb on + strandat 3155.513 kb on + strandat 3155.514 kb on - strandat 3155.514 kb on - strandat 3155.514 kb on - strandat 3155.514 kb on - strandat 3155.514 kb on - strandat 3155.514 kb on - strandat 3155.514 kb on - strandat 3155.514 kb on - strandat 3155.514 kb on - strandat 3155.514 kb on - strandat 3155.514 kb on - strandat 3155.514 kb on - strandat 3155.853 kb on + strand, within LRK54_RS14155at 3155.853 kb on + strand, within LRK54_RS14155at 3155.854 kb on - strand, within LRK54_RS14155at 3155.854 kb on - strand, within LRK54_RS14155at 3155.922 kb on + strand, within LRK54_RS14155at 3155.922 kb on + strand, within LRK54_RS14155at 3155.922 kb on + strand, within LRK54_RS14155at 3155.922 kb on + strand, within LRK54_RS14155at 3155.922 kb on + strand, within LRK54_RS14155at 3155.923 kb on - strand, within LRK54_RS14155at 3156.525 kb on + strand, within LRK54_RS14160at 3156.525 kb on + strand, within LRK54_RS14160at 3156.525 kb on + strand, within LRK54_RS14160at 3156.525 kb on + strand, within LRK54_RS14160at 3156.525 kb on + strand, within LRK54_RS14160at 3156.526 kb on - strand, within LRK54_RS14160at 3156.526 kb on - strand, within LRK54_RS14160at 3156.526 kb on - strand, within LRK54_RS14160at 3156.526 kb on - strand, within LRK54_RS14160at 3156.526 kb on - strand, within LRK54_RS14160at 3156.526 kb on - strand, within LRK54_RS14160

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A pH7
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3,153,283 + LRK54_RS14140 0.68 +0.8
3,153,283 + LRK54_RS14140 0.68 +0.8
3,153,283 + LRK54_RS14140 0.68 -0.4
3,153,284 - LRK54_RS14140 0.68 -0.5
3,153,326 + LRK54_RS14140 0.75 -0.2
3,153,327 - LRK54_RS14140 0.75 -0.5
3,153,343 + LRK54_RS14140 0.78 -0.0
3,153,343 + LRK54_RS14140 0.78 +0.9
3,153,344 - LRK54_RS14140 0.78 -2.0
3,153,551 + LRK54_RS14145 0.11 +1.1
3,153,611 + LRK54_RS14145 0.20 -0.5
3,153,611 + LRK54_RS14145 0.20 +0.0
3,153,611 + LRK54_RS14145 0.20 -0.6
3,153,611 + LRK54_RS14145 0.20 +0.2
3,153,611 + LRK54_RS14145 0.20 -0.3
3,153,611 + LRK54_RS14145 0.20 +0.2
3,153,611 + LRK54_RS14145 0.20 -0.6
3,153,612 - LRK54_RS14145 0.20 +0.1
3,153,612 - LRK54_RS14145 0.20 -0.2
3,153,612 - LRK54_RS14145 0.20 -0.2
3,153,770 + LRK54_RS14145 0.43 +0.1
3,153,770 + LRK54_RS14145 0.43 +2.4
3,153,770 + LRK54_RS14145 0.43 +0.1
3,153,770 + LRK54_RS14145 0.43 -0.6
3,153,770 + LRK54_RS14145 0.43 -2.5
3,153,770 + LRK54_RS14145 0.43 -0.8
3,153,770 + LRK54_RS14145 0.43 +0.4
3,153,770 + LRK54_RS14145 0.43 +0.9
3,153,770 + LRK54_RS14145 0.43 +1.3
3,153,770 + LRK54_RS14145 0.43 -0.6
3,153,770 + LRK54_RS14145 0.43 +0.0
3,153,770 + LRK54_RS14145 0.43 -0.6
3,153,770 + LRK54_RS14145 0.43 -0.6
3,153,771 - LRK54_RS14145 0.43 +0.7
3,153,771 - LRK54_RS14145 0.43 -0.7
3,153,771 - LRK54_RS14145 0.43 -0.5
3,153,771 - LRK54_RS14145 0.43 -0.2
3,153,771 - LRK54_RS14145 0.43 +0.2
3,153,771 - LRK54_RS14145 0.43 +1.6
3,153,771 - LRK54_RS14145 0.43 +0.3
3,153,771 - LRK54_RS14145 0.43 +1.0
3,153,941 + LRK54_RS14145 0.68 -0.2
3,153,941 + LRK54_RS14145 0.68 +1.4
3,153,942 - LRK54_RS14145 0.69 +1.1
3,153,942 - LRK54_RS14145 0.69 -0.6
3,153,942 - LRK54_RS14145 0.69 -0.4
3,153,942 - LRK54_RS14145 0.69 +1.2
3,153,983 + LRK54_RS14145 0.75 +1.8
3,153,984 - LRK54_RS14145 0.75 -0.5
3,153,984 - LRK54_RS14145 0.75 -0.5
3,154,013 + LRK54_RS14145 0.79 -0.4
3,154,013 + LRK54_RS14145 0.79 -1.7
3,154,013 + LRK54_RS14145 0.79 -2.3
3,154,013 + LRK54_RS14145 0.79 -0.8
3,154,099 + +0.2
3,154,099 + -1.0
3,154,099 + -0.5
3,154,099 + +0.0
3,154,100 - +0.2
3,154,100 - -0.0
3,154,100 - +0.5
3,154,100 - +1.1
3,154,100 - +0.5
3,154,100 - -0.5
3,154,100 - -0.8
3,154,100 - +0.1
3,154,118 + +0.0
3,154,119 - +0.4
3,154,524 - LRK54_RS14150 0.27 +1.0
3,154,552 + LRK54_RS14150 0.29 +0.0
3,154,552 + LRK54_RS14150 0.29 +0.2
3,154,552 + LRK54_RS14150 0.29 +0.1
3,154,553 - LRK54_RS14150 0.29 +0.2
3,154,553 - LRK54_RS14150 0.29 +2.4
3,154,553 - LRK54_RS14150 0.29 +0.1
3,154,553 - LRK54_RS14150 0.29 +0.1
3,154,553 - LRK54_RS14150 0.29 +0.1
3,154,664 + LRK54_RS14150 0.37 +1.4
3,155,513 + -0.5
3,155,513 + +0.4
3,155,513 + -1.0
3,155,513 + +0.3
3,155,513 + -0.3
3,155,513 + +0.5
3,155,514 - -0.9
3,155,514 - +0.1
3,155,514 - +0.4
3,155,514 - -0.1
3,155,514 - -0.3
3,155,514 - -0.2
3,155,514 - -1.8
3,155,514 - +0.8
3,155,514 - -0.2
3,155,514 - -0.5
3,155,514 - +0.4
3,155,514 - +0.5
3,155,853 + LRK54_RS14155 0.67 +0.2
3,155,853 + LRK54_RS14155 0.67 -0.7
3,155,854 - LRK54_RS14155 0.68 -0.1
3,155,854 - LRK54_RS14155 0.68 -0.4
3,155,922 + LRK54_RS14155 0.84 -0.1
3,155,922 + LRK54_RS14155 0.84 -0.4
3,155,922 + LRK54_RS14155 0.84 +4.7
3,155,922 + LRK54_RS14155 0.84 +0.0
3,155,922 + LRK54_RS14155 0.84 +0.7
3,155,923 - LRK54_RS14155 0.84 -0.3
3,156,525 + LRK54_RS14160 0.85 -2.3
3,156,525 + LRK54_RS14160 0.85 -0.1
3,156,525 + LRK54_RS14160 0.85 -1.0
3,156,525 + LRK54_RS14160 0.85 -0.8
3,156,525 + LRK54_RS14160 0.85 -0.3
3,156,526 - LRK54_RS14160 0.85 -1.0
3,156,526 - LRK54_RS14160 0.85 -1.4
3,156,526 - LRK54_RS14160 0.85 -0.1
3,156,526 - LRK54_RS14160 0.85 -0.5
3,156,526 - LRK54_RS14160 0.85 +0.4
3,156,526 - LRK54_RS14160 0.85 -0.7

Or see this region's nucleotide sequence