Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13925

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
3,107,276	+		LRK54_RS13920	0.30	+1.2
3,107,276	+		LRK54_RS13920	0.30	-0.6
3,107,276	+		LRK54_RS13920	0.30	-2.4
3,107,277	-		LRK54_RS13920	0.30	+0.8
3,107,277	-		LRK54_RS13920	0.30	+0.5
3,107,277	-		LRK54_RS13920	0.30	-0.1
3,107,277	-		LRK54_RS13920	0.30	-0.5
3,107,277	-		LRK54_RS13920	0.30	-1.0
3,107,277	-		LRK54_RS13920	0.30	-0.2
3,107,277	-		LRK54_RS13920	0.30	-0.1
3,107,277	-		LRK54_RS13920	0.30	-0.0
3,107,277	-		LRK54_RS13920	0.30	+0.6
3,107,277	-		LRK54_RS13920	0.30	-1.1
3,107,277	-		LRK54_RS13920	0.30	+0.6
3,107,294	+		LRK54_RS13920	0.32	-0.8
3,107,294	+		LRK54_RS13920	0.32	+0.2
3,107,294	+		LRK54_RS13920	0.32	-0.1
3,107,294	+		LRK54_RS13920	0.32	+1.2
3,107,294	+		LRK54_RS13920	0.32	-0.1
3,107,294	+		LRK54_RS13920	0.32	-1.4
3,107,294	+		LRK54_RS13920	0.32	+0.2
3,107,294	+		LRK54_RS13920	0.32	+0.8
3,107,295	-		LRK54_RS13920	0.32	-0.5
3,107,295	-		LRK54_RS13920	0.32	-1.6
3,107,295	-		LRK54_RS13920	0.32	+1.0
3,107,295	-		LRK54_RS13920	0.32	-0.8
3,107,295	-		LRK54_RS13920	0.32	-0.6
3,107,295	-		LRK54_RS13920	0.32	+1.5
3,107,295	-		LRK54_RS13920	0.32	-1.6
3,107,357	+		LRK54_RS13920	0.42	+0.3
3,107,357	+		LRK54_RS13920	0.42	-0.8
3,107,357	+		LRK54_RS13920	0.42	-0.0
3,107,357	+		LRK54_RS13920	0.42	-0.1
3,107,357	+		LRK54_RS13920	0.42	+1.1
3,107,357	+		LRK54_RS13920	0.42	-0.3
3,107,357	+		LRK54_RS13920	0.42	-0.4
3,107,357	+		LRK54_RS13920	0.42	-0.2
3,107,357	+		LRK54_RS13920	0.42	+0.2
3,107,357	+		LRK54_RS13920	0.42	-0.4
3,107,357	+		LRK54_RS13920	0.42	-0.5
3,107,357	+		LRK54_RS13920	0.42	-0.2
3,107,357	+		LRK54_RS13920	0.42	-0.2
3,107,358	-		LRK54_RS13920	0.42	-2.0
3,107,358	-		LRK54_RS13920	0.42	-0.4
3,107,358	-		LRK54_RS13920	0.42	-0.5
3,107,358	-		LRK54_RS13920	0.42	+0.3
3,107,358	-		LRK54_RS13920	0.42	+1.9
3,107,358	-		LRK54_RS13920	0.42	-1.1
3,107,358	-		LRK54_RS13920	0.42	-1.0
3,107,358	-		LRK54_RS13920	0.42	+0.0
3,107,378	+		LRK54_RS13920	0.45	-0.2
3,107,378	+		LRK54_RS13920	0.45	+0.9
3,107,378	+		LRK54_RS13920	0.45	-1.5
3,107,378	+		LRK54_RS13920	0.45	+0.5
3,107,378	+		LRK54_RS13920	0.45	-0.3
3,107,379	-		LRK54_RS13920	0.45	-0.2
3,107,379	-		LRK54_RS13920	0.45	-1.0
3,107,379	-		LRK54_RS13920	0.45	+0.4
3,107,379	-		LRK54_RS13920	0.45	-0.8
3,107,379	-		LRK54_RS13920	0.45	-0.4
3,107,379	-		LRK54_RS13920	0.45	-0.6
3,107,379	-		LRK54_RS13920	0.45	-0.2
3,107,379	-		LRK54_RS13920	0.45	-0.6
3,107,379	-		LRK54_RS13920	0.45	+1.7
3,107,379	-		LRK54_RS13920	0.45	-1.2
3,107,379	-		LRK54_RS13920	0.45	+0.6
3,107,516	+		LRK54_RS13920	0.66	-0.9
3,107,516	+		LRK54_RS13920	0.66	-0.8
3,107,516	+		LRK54_RS13920	0.66	+1.1
3,107,516	+		LRK54_RS13920	0.66	-0.5
3,107,516	+		LRK54_RS13920	0.66	-0.0
3,107,516	+		LRK54_RS13920	0.66	+0.2
3,107,516	+		LRK54_RS13920	0.66	+1.5
3,107,516	+		LRK54_RS13920	0.66	-1.7
3,107,516	+		LRK54_RS13920	0.66	-0.3
3,107,516	+		LRK54_RS13920	0.66	+0.3
3,107,516	+		LRK54_RS13920	0.66	-0.3
3,107,516	+		LRK54_RS13920	0.66	-0.4
3,107,517	-		LRK54_RS13920	0.66	+0.9
3,107,517	-		LRK54_RS13920	0.66	-0.3
3,107,517	-		LRK54_RS13920	0.66	-0.6
3,107,517	-		LRK54_RS13920	0.66	-0.7
3,107,517	-		LRK54_RS13920	0.66	-0.2
3,107,517	-		LRK54_RS13920	0.66	-0.2
3,107,517	-		LRK54_RS13920	0.66	-1.0
3,107,517	-		LRK54_RS13920	0.66	+0.3
3,107,615	+		LRK54_RS13920	0.81	-1.6
3,107,615	+		LRK54_RS13920	0.81	-0.4
3,107,615	+		LRK54_RS13920	0.81	-0.1
3,107,615	+		LRK54_RS13920	0.81	-0.7
3,107,615	+		LRK54_RS13920	0.81	-1.4
3,107,615	+		LRK54_RS13920	0.81	+0.1
3,107,616	-		LRK54_RS13920	0.81	+0.4
3,107,616	-		LRK54_RS13920	0.81	-0.5
3,107,616	-		LRK54_RS13920	0.81	-2.1
3,107,616	-		LRK54_RS13920	0.81	+2.3
3,107,616	-		LRK54_RS13920	0.81	-1.2
3,107,616	-		LRK54_RS13920	0.81	-0.2
3,107,616	-		LRK54_RS13920	0.81	+1.3
3,107,660	+		LRK54_RS13920	0.88	+0.3
3,107,660	+		LRK54_RS13920	0.88	+0.8
3,107,660	+		LRK54_RS13920	0.88	-1.1
3,107,661	-		LRK54_RS13920	0.88	+1.3
3,107,661	-		LRK54_RS13920	0.88	+0.0
3,107,661	-		LRK54_RS13920	0.88	+0.0
3,107,729	+				+0.6
3,107,729	+				+1.7
3,107,729	+				+0.6
3,107,729	+				+0.0
3,107,729	+				-0.2
3,107,729	+				-1.8
3,107,730	+				-1.4
3,107,730	-				+1.0
3,107,730	-				-1.5
3,107,730	-				-1.5
3,107,730	-				-1.3
3,107,730	-				-0.2
3,107,730	-				+1.0
3,107,730	-				+0.3
3,107,730	-				-0.5
3,107,730	-				-0.7
3,107,782	+				-0.4
3,107,782	+				-0.8
3,107,782	+				-0.8
3,107,782	+				+1.3
3,107,782	+				+1.8
3,107,783	-				-0.6
3,107,783	-				-0.4
3,107,783	-				-0.9
3,108,095	+		LRK54_RS13925	0.21	+0.3
3,108,095	+		LRK54_RS13925	0.21	+1.2
3,108,095	+		LRK54_RS13925	0.21	-0.1
3,108,096	-		LRK54_RS13925	0.21	-0.7
3,108,096	-		LRK54_RS13925	0.21	+0.2
3,108,261	-		LRK54_RS13925	0.43	+0.9
3,108,376	+		LRK54_RS13925	0.58	-0.2
3,108,377	-		LRK54_RS13925	0.58	+0.2
3,108,576	-		LRK54_RS13925	0.85	-0.5
3,108,576	-		LRK54_RS13925	0.85	+0.3
3,109,009	+		LRK54_RS13930	0.24	-1.2
3,109,009	+		LRK54_RS13930	0.24	+0.5
3,109,009	+		LRK54_RS13930	0.24	+0.3
3,109,010	-		LRK54_RS13930	0.24	+0.8
3,109,010	-		LRK54_RS13930	0.24	+0.0
3,109,010	-		LRK54_RS13930	0.24	-1.2
3,109,010	-		LRK54_RS13930	0.24	-0.5
3,109,010	-		LRK54_RS13930	0.24	-0.1
3,109,010	-		LRK54_RS13930	0.24	-1.6
3,109,010	-		LRK54_RS13930	0.24	-0.2
3,109,044	+		LRK54_RS13930	0.27	-1.0
3,109,189	+		LRK54_RS13930	0.38	+0.2
3,109,189	+		LRK54_RS13930	0.38	+1.3
3,109,189	+		LRK54_RS13930	0.38	-0.3
3,109,189	+		LRK54_RS13930	0.38	-0.1
3,109,189	+		LRK54_RS13930	0.38	-0.7
3,109,190	-		LRK54_RS13930	0.38	+0.2
3,109,190	-		LRK54_RS13930	0.38	+0.8
3,109,190	-		LRK54_RS13930	0.38	+0.2
3,109,190	-		LRK54_RS13930	0.38	+1.7
3,109,190	-		LRK54_RS13930	0.38	+0.1
3,109,402	+		LRK54_RS13930	0.53	+1.9
3,109,402	+		LRK54_RS13930	0.53	-1.1
3,109,402	+		LRK54_RS13930	0.53	+0.4
3,109,402	+		LRK54_RS13930	0.53	-1.2
3,109,402	+		LRK54_RS13930	0.53	+1.2
3,109,402	+		LRK54_RS13930	0.53	-0.5
3,109,403	-		LRK54_RS13930	0.54	+0.0
3,109,403	-		LRK54_RS13930	0.54	-0.4
3,109,403	-		LRK54_RS13930	0.54	-1.6
3,109,403	-		LRK54_RS13930	0.54	-0.6
3,109,403	-		LRK54_RS13930	0.54	+0.1
3,109,403	-		LRK54_RS13930	0.54	+0.6
3,109,403	-		LRK54_RS13930	0.54	+0.2