Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13425

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
3,006,984	+		LRK54_RS13420	0.44	+0.5
3,006,984	+		LRK54_RS13420	0.44	+0.1
3,006,984	+		LRK54_RS13420	0.44	+0.2
3,006,984	+		LRK54_RS13420	0.44	+0.7
3,006,984	+		LRK54_RS13420	0.44	-1.1
3,006,984	+		LRK54_RS13420	0.44	+1.2
3,006,985	-		LRK54_RS13420	0.44	+0.5
3,006,985	-		LRK54_RS13420	0.44	+1.4
3,006,985	-		LRK54_RS13420	0.44	+0.5
3,006,985	-		LRK54_RS13420	0.44	+0.8
3,006,985	-		LRK54_RS13420	0.44	-2.2
3,006,985	-		LRK54_RS13420	0.44	+0.8
3,006,985	-		LRK54_RS13420	0.44	+0.9
3,006,985	-		LRK54_RS13420	0.44	+0.2
3,006,985	-		LRK54_RS13420	0.44	-0.7
3,007,011	+		LRK54_RS13420	0.47	+1.1
3,007,012	-		LRK54_RS13420	0.47	+1.1
3,007,012	-		LRK54_RS13420	0.47	-0.5
3,007,012	-		LRK54_RS13420	0.47	+0.1
3,007,012	-		LRK54_RS13420	0.47	+0.2
3,007,012	-		LRK54_RS13420	0.47	+1.9
3,007,012	-		LRK54_RS13420	0.47	+1.2
3,007,012	-		LRK54_RS13420	0.47	+0.8
3,007,047	+		LRK54_RS13420	0.50	-0.8
3,007,047	+		LRK54_RS13420	0.50	-0.0
3,007,048	-		LRK54_RS13420	0.50	+0.1
3,007,048	-		LRK54_RS13420	0.50	+0.4
3,007,048	-		LRK54_RS13420	0.50	+0.5
3,007,048	-		LRK54_RS13420	0.50	+1.2
3,007,048	-		LRK54_RS13420	0.50	+0.3
3,007,048	-		LRK54_RS13420	0.50	-0.8
3,007,092	+		LRK54_RS13420	0.53	-3.0
3,007,092	+		LRK54_RS13420	0.53	+0.6
3,007,092	+		LRK54_RS13420	0.53	+0.3
3,007,092	+		LRK54_RS13420	0.53	-0.2
3,007,092	+		LRK54_RS13420	0.53	+0.1
3,007,092	+		LRK54_RS13420	0.53	+0.2
3,007,092	+		LRK54_RS13420	0.53	+0.0
3,007,092	+		LRK54_RS13420	0.53	-1.1
3,007,092	+		LRK54_RS13420	0.53	+0.9
3,007,092	+		LRK54_RS13420	0.53	-0.7
3,007,093	-		LRK54_RS13420	0.53	+0.3
3,007,093	-		LRK54_RS13420	0.53	+1.4
3,007,093	-		LRK54_RS13420	0.53	-0.1
3,007,093	-		LRK54_RS13420	0.53	-1.0
3,007,093	-		LRK54_RS13420	0.53	+0.4
3,007,093	-		LRK54_RS13420	0.53	+0.4
3,007,093	-		LRK54_RS13420	0.53	+0.2
3,007,093	-		LRK54_RS13420	0.53	+1.9
3,007,093	-		LRK54_RS13420	0.53	-0.3
3,007,093	-		LRK54_RS13420	0.53	+0.2
3,007,093	-		LRK54_RS13420	0.53	-0.6
3,007,093	-		LRK54_RS13420	0.53	-0.4
3,007,094	+		LRK54_RS13420	0.53	+0.6
3,007,267	-		LRK54_RS13420	0.67	+0.8
3,007,267	-		LRK54_RS13420	0.67	+0.9
3,007,356	+		LRK54_RS13420	0.75	+1.4
3,007,356	+		LRK54_RS13420	0.75	-0.1
3,007,356	+		LRK54_RS13420	0.75	+1.4
3,007,356	+		LRK54_RS13420	0.75	+1.5
3,007,356	+		LRK54_RS13420	0.75	+0.3
3,007,356	+		LRK54_RS13420	0.75	+0.0
3,007,356	+		LRK54_RS13420	0.75	+0.8
3,007,357	-		LRK54_RS13420	0.75	+1.5
3,007,357	-		LRK54_RS13420	0.75	+0.5
3,007,357	-		LRK54_RS13420	0.75	+0.5
3,007,357	-		LRK54_RS13420	0.75	-0.1
3,007,357	-		LRK54_RS13420	0.75	-0.1
3,007,458	+		LRK54_RS13420	0.83	+1.1
3,007,458	+		LRK54_RS13420	0.83	-0.2
3,007,458	+		LRK54_RS13420	0.83	+0.4
3,007,458	+		LRK54_RS13420	0.83	-0.5
3,007,459	-		LRK54_RS13420	0.83	+0.0
3,007,459	-		LRK54_RS13420	0.83	-1.1
3,007,459	-		LRK54_RS13420	0.83	-0.9
3,007,593	+				-0.2
3,007,593	+				+0.4
3,007,593	+				+0.1
3,007,593	+				+0.5
3,007,593	+				-0.2
3,007,594	-				+1.3
3,007,594	-				+2.4
3,007,594	-				+1.4
3,007,594	-				+1.0
3,007,594	-				-0.1
3,007,594	-				+0.7
3,007,790	+				-1.3
3,007,791	-				-0.0
3,007,826	+				-0.1
3,007,826	+				-0.8
3,007,826	+				-0.2
3,007,826	+				+0.5
3,007,826	+				+1.2
3,007,826	+				-0.1
3,007,826	+				+0.5
3,007,826	+				-0.2
3,007,826	+				+0.1
3,007,826	+				+0.4
3,007,826	+				+0.2
3,007,826	+				+0.3
3,007,826	+				+0.0
3,007,827	-				+1.5
3,007,827	-				+0.5
3,007,827	-				+2.1
3,007,827	-				+0.6
3,007,827	-				+0.6
3,007,827	-				-0.3
3,007,827	-				+0.0
3,007,827	-				+1.0
3,007,830	+				+0.9
3,007,830	+				-0.1
3,007,830	+				+0.8
3,007,830	+				+1.6
3,007,830	+				+0.4
3,007,830	+				-0.2
3,007,830	+				+0.1
3,007,831	-				+1.0
3,007,831	-				-1.7
3,007,831	-				+1.2
3,007,831	-				+0.5
3,007,831	-				+0.2
3,007,831	-				+0.1
3,008,105	+		LRK54_RS13425	0.40	+0.7
3,008,105	+		LRK54_RS13425	0.40	+1.0
3,008,105	+		LRK54_RS13425	0.40	-1.5
3,008,105	+		LRK54_RS13425	0.40	+4.7
3,008,105	+		LRK54_RS13425	0.40	-0.9
3,008,106	-		LRK54_RS13425	0.40	-0.4
3,008,106	-		LRK54_RS13425	0.40	-0.5
3,008,106	-		LRK54_RS13425	0.40	+0.4
3,008,107	+		LRK54_RS13425	0.40	+0.1
3,008,475	-		LRK54_RS13425	0.90	+1.9
3,008,701	+		LRK54_RS13430	0.13	+0.9
3,008,701	+		LRK54_RS13430	0.13	+0.4
3,008,701	+		LRK54_RS13430	0.13	+2.7
3,008,702	-		LRK54_RS13430	0.13	+1.0
3,008,702	-		LRK54_RS13430	0.13	+0.6
3,008,738	-		LRK54_RS13430	0.17	+0.5
3,008,738	-		LRK54_RS13430	0.17	-0.1
3,008,738	-		LRK54_RS13430	0.17	-0.4
3,008,941	+		LRK54_RS13430	0.43	-1.0
3,008,941	+		LRK54_RS13430	0.43	+0.0
3,008,941	+		LRK54_RS13430	0.43	+0.2
3,008,941	+		LRK54_RS13430	0.43	+1.1
3,008,941	+		LRK54_RS13430	0.43	+0.7
3,008,942	-		LRK54_RS13430	0.43	-0.2
3,008,944	-		LRK54_RS13430	0.44	+0.4
3,009,175	+		LRK54_RS13430	0.73	+1.4
3,009,176	-		LRK54_RS13430	0.73	+1.0
3,009,176	-		LRK54_RS13430	0.73	+0.2
3,009,319	+				+0.3
3,009,319	+				-0.3
3,009,320	-				-0.2
3,009,320	-				+0.9
3,009,549	+		LRK54_RS13435	0.22	+0.5
3,009,549	+		LRK54_RS13435	0.22	+0.2
3,009,549	+		LRK54_RS13435	0.22	+0.6
3,009,549	+		LRK54_RS13435	0.22	-0.0
3,009,549	+		LRK54_RS13435	0.22	-1.1
3,009,550	-		LRK54_RS13435	0.22	+1.5
3,009,550	-		LRK54_RS13435	0.22	-0.9
3,009,550	-		LRK54_RS13435	0.22	+0.2
3,009,550	-		LRK54_RS13435	0.22	+0.0
3,009,550	-		LRK54_RS13435	0.22	+1.3
3,009,550	-		LRK54_RS13435	0.22	+1.4