Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13390

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
3,000,701	+				+1.5
3,000,701	+				+0.1
3,000,702	-				-1.1
3,000,713	+				+0.8
3,000,713	+				+0.9
3,000,713	+				-1.5
3,000,714	-				-0.3
3,000,714	-				+0.6
3,000,714	-				-0.5
3,000,756	+		LRK54_RS13380	0.13	+1.0
3,000,756	+		LRK54_RS13380	0.13	-0.5
3,000,757	-		LRK54_RS13380	0.13	-0.7
3,000,757	-		LRK54_RS13380	0.13	+0.7
3,000,757	-		LRK54_RS13380	0.13	-0.0
3,000,757	-		LRK54_RS13380	0.13	+1.6
3,000,757	-		LRK54_RS13380	0.13	+0.2
3,000,757	-		LRK54_RS13380	0.13	+0.6
3,000,757	-		LRK54_RS13380	0.13	+1.0
3,000,757	-		LRK54_RS13380	0.13	+0.8
3,000,864	+		LRK54_RS13380	0.37	+1.0
3,000,864	+		LRK54_RS13380	0.37	-0.2
3,000,864	+		LRK54_RS13380	0.37	+0.2
3,000,864	+		LRK54_RS13380	0.37	+0.7
3,000,864	+		LRK54_RS13380	0.37	+0.0
3,000,864	+		LRK54_RS13380	0.37	+0.8
3,000,864	+		LRK54_RS13380	0.37	-0.1
3,000,864	+		LRK54_RS13380	0.37	-0.3
3,000,864	+		LRK54_RS13380	0.37	+1.9
3,000,864	+		LRK54_RS13380	0.37	-0.7
3,000,864	+		LRK54_RS13380	0.37	+0.7
3,000,865	-		LRK54_RS13380	0.37	-0.1
3,000,865	-		LRK54_RS13380	0.37	-0.4
3,000,865	-		LRK54_RS13380	0.37	+1.1
3,000,865	-		LRK54_RS13380	0.37	-0.4
3,000,865	-		LRK54_RS13380	0.37	-0.7
3,000,865	-		LRK54_RS13380	0.37	+0.2
3,001,055	+		LRK54_RS13380	0.80	+1.1
3,001,056	-		LRK54_RS13380	0.80	+0.3
3,001,056	-		LRK54_RS13380	0.80	+0.5
3,001,217	+		LRK54_RS13385	0.23	-0.2
3,001,218	-		LRK54_RS13385	0.24	+0.8
3,001,459	-				-1.9
3,001,459	-				-0.5
3,001,459	-				-0.4
3,001,459	-				-1.2
3,001,459	-				+0.4
3,001,459	-				-0.8
3,001,459	-				+0.0
3,001,459	-				-0.2
3,001,459	-				-1.1
3,001,459	-				-2.5
3,001,494	+				+0.4
3,001,494	+				+0.8
3,001,527	+				+1.0
3,001,527	+				-0.5
3,001,527	+				-1.4
3,001,546	+				-0.2
3,001,546	+				+0.2
3,001,547	-				+0.4
3,001,751	+		LRK54_RS13390	0.24	+0.4
3,001,751	+		LRK54_RS13390	0.24	-0.7
3,001,751	+		LRK54_RS13390	0.24	-0.4
3,001,751	+		LRK54_RS13390	0.24	+0.5
3,001,751	+		LRK54_RS13390	0.24	+0.6
3,001,752	-		LRK54_RS13390	0.24	+0.3
3,001,752	-		LRK54_RS13390	0.24	+0.2
3,001,752	-		LRK54_RS13390	0.24	+0.1
3,001,752	-		LRK54_RS13390	0.24	+0.9
3,001,752	-		LRK54_RS13390	0.24	-0.2
3,001,752	-		LRK54_RS13390	0.24	-1.3
3,001,819	+		LRK54_RS13390	0.33	+0.3
3,001,820	-		LRK54_RS13390	0.34	+1.4
3,001,820	-		LRK54_RS13390	0.34	+0.8
3,001,849	+		LRK54_RS13390	0.38	+1.7
3,001,849	+		LRK54_RS13390	0.38	-1.5
3,001,849	+		LRK54_RS13390	0.38	+0.5
3,001,849	+		LRK54_RS13390	0.38	-0.1
3,001,849	+		LRK54_RS13390	0.38	+0.6
3,001,849	+		LRK54_RS13390	0.38	+0.9
3,001,849	+		LRK54_RS13390	0.38	-0.7
3,001,849	+		LRK54_RS13390	0.38	+0.0
3,001,849	+		LRK54_RS13390	0.38	+0.6
3,001,850	-		LRK54_RS13390	0.38	-2.0
3,001,850	-		LRK54_RS13390	0.38	-1.0
3,001,850	-		LRK54_RS13390	0.38	+0.8
3,001,850	-		LRK54_RS13390	0.38	-0.1
3,001,850	-		LRK54_RS13390	0.38	+1.1
3,001,850	-		LRK54_RS13390	0.38	+0.1
3,001,850	-		LRK54_RS13390	0.38	+2.4
3,001,851	+		LRK54_RS13390	0.38	+0.3
3,001,851	+		LRK54_RS13390	0.38	-1.3
3,001,851	+		LRK54_RS13390	0.38	-0.0
3,001,851	+		LRK54_RS13390	0.38	-0.5
3,001,851	+		LRK54_RS13390	0.38	-0.5
3,001,851	+		LRK54_RS13390	0.38	-0.1
3,001,851	+		LRK54_RS13390	0.38	+0.0
3,001,851	+		LRK54_RS13390	0.38	+0.0
3,001,851	+		LRK54_RS13390	0.38	-1.6
3,001,851	+		LRK54_RS13390	0.38	+0.0
3,001,851	+		LRK54_RS13390	0.38	+0.1
3,001,851	+		LRK54_RS13390	0.38	-0.2
3,001,851	+		LRK54_RS13390	0.38	-0.2
3,001,851	+		LRK54_RS13390	0.38	+0.1
3,001,851	+		LRK54_RS13390	0.38	-2.3
3,001,852	-		LRK54_RS13390	0.38	+0.1
3,001,852	-		LRK54_RS13390	0.38	-0.4
3,001,852	-		LRK54_RS13390	0.38	-0.4
3,001,852	-		LRK54_RS13390	0.38	-0.2
3,001,852	-		LRK54_RS13390	0.38	+0.7
3,001,852	-		LRK54_RS13390	0.38	-1.3
3,001,852	-		LRK54_RS13390	0.38	+0.7
3,001,852	-		LRK54_RS13390	0.38	+0.1
3,001,852	-		LRK54_RS13390	0.38	-1.2
3,001,852	-		LRK54_RS13390	0.38	+0.4
3,001,852	-		LRK54_RS13390	0.38	+0.9
3,001,852	-		LRK54_RS13390	0.38	-1.4
3,001,852	-		LRK54_RS13390	0.38	-1.0
3,001,852	-		LRK54_RS13390	0.38	+0.8
3,001,852	-		LRK54_RS13390	0.38	+0.9
3,001,852	-		LRK54_RS13390	0.38	+0.2
3,001,852	-		LRK54_RS13390	0.38	+0.4
3,001,852	-		LRK54_RS13390	0.38	-0.2
3,002,148	+		LRK54_RS13390	0.78	-0.1
3,002,148	+		LRK54_RS13390	0.78	-0.1
3,002,148	+		LRK54_RS13390	0.78	+1.4
3,002,148	+		LRK54_RS13390	0.78	+0.9
3,002,148	+		LRK54_RS13390	0.78	+0.8
3,002,148	+		LRK54_RS13390	0.78	+0.9
3,002,149	-		LRK54_RS13390	0.79	-1.0
3,002,149	-		LRK54_RS13390	0.79	+0.7
3,002,149	-		LRK54_RS13390	0.79	+1.1
3,002,149	-		LRK54_RS13390	0.79	+0.1
3,002,149	-		LRK54_RS13390	0.79	+2.0
3,002,149	-		LRK54_RS13390	0.79	-0.6
3,002,149	-		LRK54_RS13390	0.79	+0.3
3,002,149	-		LRK54_RS13390	0.79	-1.7
3,002,486	+		LRK54_RS13395	0.21	-0.2
3,002,486	+		LRK54_RS13395	0.21	+0.0
3,002,486	+		LRK54_RS13395	0.21	+0.4
3,002,486	+		LRK54_RS13395	0.21	+0.7
3,002,486	+		LRK54_RS13395	0.21	-1.3
3,002,486	+		LRK54_RS13395	0.21	-0.4
3,002,486	+		LRK54_RS13395	0.21	+0.2
3,002,487	-		LRK54_RS13395	0.21	-0.7
3,002,487	-		LRK54_RS13395	0.21	+0.5
3,002,487	-		LRK54_RS13395	0.21	-0.3
3,002,487	-		LRK54_RS13395	0.21	-0.9
3,002,487	-		LRK54_RS13395	0.21	-0.2
3,002,487	-		LRK54_RS13395	0.21	-0.4
3,002,862	+		LRK54_RS13395	0.65	-0.3
3,002,863	-		LRK54_RS13395	0.65	-0.5
3,003,092	-				+0.4