Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13380

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
2,999,796	+		LRK54_RS13375	0.38	+0.2
2,999,796	+		LRK54_RS13375	0.38	-1.5
2,999,796	+		LRK54_RS13375	0.38	-0.1
2,999,796	+		LRK54_RS13375	0.38	-0.1
2,999,796	+		LRK54_RS13375	0.38	+1.4
2,999,796	+		LRK54_RS13375	0.38	-0.6
2,999,797	-		LRK54_RS13375	0.38	+0.1
2,999,797	-		LRK54_RS13375	0.38	-0.2
2,999,797	-		LRK54_RS13375	0.38	-0.3
2,999,797	-		LRK54_RS13375	0.38	-0.4
2,999,826	+		LRK54_RS13375	0.40	-0.1
2,999,826	+		LRK54_RS13375	0.40	+0.5
2,999,826	+		LRK54_RS13375	0.40	-1.7
2,999,826	+		LRK54_RS13375	0.40	+0.2
2,999,826	+		LRK54_RS13375	0.40	+0.7
2,999,826	+		LRK54_RS13375	0.40	+0.0
2,999,826	+		LRK54_RS13375	0.40	-0.9
2,999,826	+		LRK54_RS13375	0.40	-0.7
2,999,826	+		LRK54_RS13375	0.40	-1.8
2,999,826	+		LRK54_RS13375	0.40	-1.5
2,999,826	+		LRK54_RS13375	0.40	-0.3
2,999,826	+		LRK54_RS13375	0.40	-0.3
2,999,826	+		LRK54_RS13375	0.40	-0.2
2,999,826	+		LRK54_RS13375	0.40	+0.4
2,999,826	+		LRK54_RS13375	0.40	-0.8
2,999,826	+		LRK54_RS13375	0.40	-0.9
2,999,826	+		LRK54_RS13375	0.40	-0.8
2,999,826	+		LRK54_RS13375	0.40	-0.3
2,999,826	+		LRK54_RS13375	0.40	-1.3
2,999,826	+		LRK54_RS13375	0.40	-0.6
2,999,827	-		LRK54_RS13375	0.40	+2.0
2,999,827	-		LRK54_RS13375	0.40	+0.4
2,999,827	-		LRK54_RS13375	0.40	-0.1
2,999,827	-		LRK54_RS13375	0.40	-0.2
2,999,827	-		LRK54_RS13375	0.40	-0.1
2,999,827	-		LRK54_RS13375	0.40	-1.0
2,999,827	-		LRK54_RS13375	0.40	+0.6
2,999,827	-		LRK54_RS13375	0.40	+0.9
2,999,827	-		LRK54_RS13375	0.40	-0.2
2,999,827	-		LRK54_RS13375	0.40	+1.0
2,999,827	-		LRK54_RS13375	0.40	-0.2
2,999,827	-		LRK54_RS13375	0.40	-0.3
2,999,827	-		LRK54_RS13375	0.40	-1.7
2,999,827	-		LRK54_RS13375	0.40	+0.2
2,999,827	-		LRK54_RS13375	0.40	+0.8
2,999,827	-		LRK54_RS13375	0.40	+0.6
2,999,970	+		LRK54_RS13375	0.51	-1.5
2,999,970	+		LRK54_RS13375	0.51	+0.2
2,999,970	+		LRK54_RS13375	0.51	-0.3
2,999,971	-		LRK54_RS13375	0.52	+0.5
3,000,015	+		LRK54_RS13375	0.55	+1.6
3,000,015	+		LRK54_RS13375	0.55	-0.4
3,000,015	+		LRK54_RS13375	0.55	+0.6
3,000,015	+		LRK54_RS13375	0.55	+0.2
3,000,015	+		LRK54_RS13375	0.55	-2.0
3,000,015	+		LRK54_RS13375	0.55	-0.8
3,000,015	+		LRK54_RS13375	0.55	+2.4
3,000,015	+		LRK54_RS13375	0.55	+0.4
3,000,015	+		LRK54_RS13375	0.55	+0.8
3,000,015	+		LRK54_RS13375	0.55	-0.6
3,000,015	+		LRK54_RS13375	0.55	-1.1
3,000,015	+		LRK54_RS13375	0.55	-1.1
3,000,015	+		LRK54_RS13375	0.55	+0.5
3,000,015	+		LRK54_RS13375	0.55	+0.4
3,000,015	+		LRK54_RS13375	0.55	+0.0
3,000,016	-		LRK54_RS13375	0.55	-0.4
3,000,016	-		LRK54_RS13375	0.55	-0.4
3,000,016	-		LRK54_RS13375	0.55	+1.1
3,000,016	-		LRK54_RS13375	0.55	-0.2
3,000,016	-		LRK54_RS13375	0.55	-0.1
3,000,016	-		LRK54_RS13375	0.55	+0.3
3,000,016	-		LRK54_RS13375	0.55	+1.1
3,000,016	-		LRK54_RS13375	0.55	+0.8
3,000,016	-		LRK54_RS13375	0.55	-0.2
3,000,016	-		LRK54_RS13375	0.55	-1.0
3,000,459	+		LRK54_RS13375	0.90	+0.2
3,000,494	+				-0.3
3,000,494	+				+0.3
3,000,495	-				+0.9
3,000,701	+				+1.5
3,000,701	+				+0.1
3,000,702	-				-1.1
3,000,713	+				+0.8
3,000,713	+				+0.9
3,000,713	+				-1.5
3,000,714	-				-0.3
3,000,714	-				+0.6
3,000,714	-				-0.5
3,000,756	+		LRK54_RS13380	0.13	+1.0
3,000,756	+		LRK54_RS13380	0.13	-0.5
3,000,757	-		LRK54_RS13380	0.13	-0.7
3,000,757	-		LRK54_RS13380	0.13	+0.7
3,000,757	-		LRK54_RS13380	0.13	-0.0
3,000,757	-		LRK54_RS13380	0.13	+1.6
3,000,757	-		LRK54_RS13380	0.13	+0.2
3,000,757	-		LRK54_RS13380	0.13	+0.6
3,000,757	-		LRK54_RS13380	0.13	+1.0
3,000,757	-		LRK54_RS13380	0.13	+0.8
3,000,864	+		LRK54_RS13380	0.37	+1.0
3,000,864	+		LRK54_RS13380	0.37	-0.2
3,000,864	+		LRK54_RS13380	0.37	+0.2
3,000,864	+		LRK54_RS13380	0.37	+0.7
3,000,864	+		LRK54_RS13380	0.37	+0.0
3,000,864	+		LRK54_RS13380	0.37	+0.8
3,000,864	+		LRK54_RS13380	0.37	-0.1
3,000,864	+		LRK54_RS13380	0.37	-0.3
3,000,864	+		LRK54_RS13380	0.37	+1.9
3,000,864	+		LRK54_RS13380	0.37	-0.7
3,000,864	+		LRK54_RS13380	0.37	+0.7
3,000,865	-		LRK54_RS13380	0.37	-0.1
3,000,865	-		LRK54_RS13380	0.37	-0.4
3,000,865	-		LRK54_RS13380	0.37	+1.1
3,000,865	-		LRK54_RS13380	0.37	-0.4
3,000,865	-		LRK54_RS13380	0.37	-0.7
3,000,865	-		LRK54_RS13380	0.37	+0.2
3,001,055	+		LRK54_RS13380	0.80	+1.1
3,001,056	-		LRK54_RS13380	0.80	+0.3
3,001,056	-		LRK54_RS13380	0.80	+0.5
3,001,217	+		LRK54_RS13385	0.23	-0.2
3,001,218	-		LRK54_RS13385	0.24	+0.8
3,001,459	-				-1.9
3,001,459	-				-0.5
3,001,459	-				-0.4
3,001,459	-				-1.2
3,001,459	-				+0.8
3,001,459	-				+0.4
3,001,459	-				-0.8
3,001,459	-				+0.0
3,001,459	-				-0.2
3,001,459	-				-1.1
3,001,459	-				-2.5
3,001,494	+				+0.4
3,001,494	+				+0.8
3,001,527	+				+1.0
3,001,527	+				-0.5
3,001,527	+				-1.4
3,001,546	+				-0.2
3,001,546	+				+0.2
3,001,547	-				+0.4
3,001,751	+		LRK54_RS13390	0.24	+0.4
3,001,751	+		LRK54_RS13390	0.24	-0.7
3,001,751	+		LRK54_RS13390	0.24	-0.4
3,001,751	+		LRK54_RS13390	0.24	+0.5
3,001,751	+		LRK54_RS13390	0.24	+0.6
3,001,752	-		LRK54_RS13390	0.24	+0.3
3,001,752	-		LRK54_RS13390	0.24	+0.2
3,001,752	-		LRK54_RS13390	0.24	+0.1
3,001,752	-		LRK54_RS13390	0.24	+0.9
3,001,752	-		LRK54_RS13390	0.24	-0.2
3,001,752	-		LRK54_RS13390	0.24	-1.3
3,001,819	+		LRK54_RS13390	0.33	+0.3
3,001,820	-		LRK54_RS13390	0.34	+1.4
3,001,820	-		LRK54_RS13390	0.34	+0.8
3,001,849	+		LRK54_RS13390	0.38	+1.7
3,001,849	+		LRK54_RS13390	0.38	-1.5
3,001,849	+		LRK54_RS13390	0.38	+0.5
3,001,849	+		LRK54_RS13390	0.38	-0.1
3,001,849	+		LRK54_RS13390	0.38	+0.6
3,001,849	+		LRK54_RS13390	0.38	+0.9
3,001,849	+		LRK54_RS13390	0.38	-0.7
3,001,849	+		LRK54_RS13390	0.38	+0.0
3,001,849	+		LRK54_RS13390	0.38	+0.6
3,001,850	-		LRK54_RS13390	0.38	-2.0
3,001,850	-		LRK54_RS13390	0.38	-1.0
3,001,850	-		LRK54_RS13390	0.38	+0.8
3,001,850	-		LRK54_RS13390	0.38	-0.1
3,001,850	-		LRK54_RS13390	0.38	+1.1
3,001,850	-		LRK54_RS13390	0.38	+0.1
3,001,850	-		LRK54_RS13390	0.38	+2.4
3,001,851	+		LRK54_RS13390	0.38	+0.3
3,001,851	+		LRK54_RS13390	0.38	-1.3
3,001,851	+		LRK54_RS13390	0.38	-0.0
3,001,851	+		LRK54_RS13390	0.38	-0.5
3,001,851	+		LRK54_RS13390	0.38	-0.5
3,001,851	+		LRK54_RS13390	0.38	-0.1
3,001,851	+		LRK54_RS13390	0.38	+0.0
3,001,851	+		LRK54_RS13390	0.38	-1.6
3,001,851	+		LRK54_RS13390	0.38	+0.0
3,001,851	+		LRK54_RS13390	0.38	+0.1
3,001,851	+		LRK54_RS13390	0.38	-0.2
3,001,851	+		LRK54_RS13390	0.38	-0.2
3,001,851	+		LRK54_RS13390	0.38	+0.1
3,001,851	+		LRK54_RS13390	0.38	-2.3
3,001,852	-		LRK54_RS13390	0.38	+0.1
3,001,852	-		LRK54_RS13390	0.38	-0.4
3,001,852	-		LRK54_RS13390	0.38	-0.4
3,001,852	-		LRK54_RS13390	0.38	-0.2
3,001,852	-		LRK54_RS13390	0.38	+0.7
3,001,852	-		LRK54_RS13390	0.38	-1.3
3,001,852	-		LRK54_RS13390	0.38	+0.7
3,001,852	-		LRK54_RS13390	0.38	+0.1
3,001,852	-		LRK54_RS13390	0.38	-1.2
3,001,852	-		LRK54_RS13390	0.38	+0.4
3,001,852	-		LRK54_RS13390	0.38	+0.9
3,001,852	-		LRK54_RS13390	0.38	-1.4
3,001,852	-		LRK54_RS13390	0.38	-1.0
3,001,852	-		LRK54_RS13390	0.38	+0.8
3,001,852	-		LRK54_RS13390	0.38	+0.9
3,001,852	-		LRK54_RS13390	0.38	+0.2
3,001,852	-		LRK54_RS13390	0.38	+0.4
3,001,852	-		LRK54_RS13390	0.38	-0.2