Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12280

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
2,730,446	+				+1.4
2,730,446	+				-1.9
2,730,446	+				+0.8
2,730,446	+				+1.6
2,730,446	+				+1.2
2,730,447	-				-0.8
2,730,447	-				-1.3
2,730,447	-				-0.9
2,730,447	-				+0.5
2,730,447	-				-1.3
2,730,447	-				-1.2
2,730,447	-				+1.1
2,730,479	+				+0.5
2,730,479	+				-0.3
2,730,479	+				-0.6
2,730,479	+				-2.8
2,730,480	-				-1.1
2,730,480	-				-2.8
2,730,480	-				-0.9
2,730,597	+				+0.0
2,730,597	+				+0.5
2,730,597	+				+0.3
2,730,597	+				+0.6
2,730,598	-				-0.1
2,730,598	-				-0.1
2,730,598	-				+0.2
2,730,634	+				+1.4
2,730,634	+				+0.1
2,730,634	+				-1.1
2,730,634	+				+1.4
2,730,635	-				-0.5
2,730,635	-				+0.1
2,730,641	+				+1.2
2,730,641	+				+0.1
2,730,641	+				-0.8
2,730,641	+				-0.2
2,730,656	+				+1.5
2,730,656	+				-1.1
2,730,656	+				+0.3
2,730,656	+				-0.3
2,730,656	+				-1.6
2,730,656	+				+0.3
2,730,656	+				+0.5
2,730,656	+				-0.5
2,730,656	+				-0.7
2,730,656	+				-1.4
2,730,657	-				+0.7
2,730,657	-				+1.0
2,730,657	-				+0.8
2,730,658	+				+0.0
2,730,658	+				-0.5
2,730,658	+				-2.1
2,730,658	+				-0.8
2,730,658	+				-1.5
2,730,659	-				-0.2
2,730,659	-				+0.4
2,730,659	-				+0.2
2,730,659	-				-1.0
2,730,659	-				-0.9
2,730,659	-				-1.3
2,730,659	-				-0.1
2,730,659	-				+0.4
2,730,659	-				-0.2
2,730,659	-				-1.3
2,730,659	-				+0.2
2,730,754	+		LRK54_RS12275	0.13	+2.2
2,731,211	+				-0.6
2,731,211	+				-0.2
2,731,211	+				+0.1
2,731,211	+				-0.2
2,731,211	+				+0.0
2,731,211	+				-0.4
2,731,211	+				-1.0
2,731,211	+				-1.2
2,731,211	+				+0.3
2,731,211	+				-0.0
2,731,211	+				+2.4
2,731,211	+				+0.3
2,731,211	+				-0.3
2,731,212	-				+1.1
2,731,212	-				+0.7
2,731,212	-				-0.8
2,731,212	-				+2.2
2,731,212	-				+0.2
2,731,212	-				-0.9
2,731,212	-				+0.5
2,731,212	-				-0.1
2,731,212	-				+0.8
2,731,212	-				-0.1
2,731,212	-				-1.0
2,731,212	-				+0.4
2,731,212	-				-1.2
2,731,212	-				+0.7
2,731,212	-				-0.1
2,731,212	-				-0.1
2,731,212	-				-0.2
2,731,217	+				-1.0
2,731,217	+				+0.9
2,731,217	+				+1.0
2,731,217	+				-0.1
2,731,217	+				+0.7
2,731,217	+				+0.4
2,731,217	+				-0.5
2,731,218	-				-0.2
2,731,218	-				-1.3
2,731,218	-				-1.0
2,731,218	-				+0.4
2,731,305	-		LRK54_RS12280	0.11	+0.2
2,731,346	+		LRK54_RS12280	0.16	-0.3
2,731,347	-		LRK54_RS12280	0.16	-0.2
2,731,347	-		LRK54_RS12280	0.16	+0.0
2,731,615	+		LRK54_RS12280	0.45	+0.9
2,731,615	+		LRK54_RS12280	0.45	-0.9
2,731,615	+		LRK54_RS12280	0.45	-0.3
2,731,615	+		LRK54_RS12280	0.45	-0.0
2,731,615	+		LRK54_RS12280	0.45	+0.6
2,731,615	+		LRK54_RS12280	0.45	+0.8
2,731,615	+		LRK54_RS12280	0.45	-0.3
2,731,616	-		LRK54_RS12280	0.45	-0.3
2,731,616	-		LRK54_RS12280	0.45	+0.3
2,731,616	-		LRK54_RS12280	0.45	+0.4
2,731,616	-		LRK54_RS12280	0.45	+1.2
2,731,616	-		LRK54_RS12280	0.45	-0.2
2,731,616	-		LRK54_RS12280	0.45	+1.4
2,731,616	-		LRK54_RS12280	0.45	+1.4
2,731,616	-		LRK54_RS12280	0.45	+0.2
2,731,616	-		LRK54_RS12280	0.45	-1.4
2,731,616	-		LRK54_RS12280	0.45	-0.4
2,731,616	-		LRK54_RS12280	0.45	-1.6
2,731,765	+		LRK54_RS12280	0.61	-1.2
2,731,765	+		LRK54_RS12280	0.61	+1.2
2,731,766	-		LRK54_RS12280	0.61	-0.6
2,731,766	-		LRK54_RS12280	0.61	-0.9
2,731,766	-		LRK54_RS12280	0.61	+0.1
2,731,766	-		LRK54_RS12280	0.61	+0.7
2,731,766	-		LRK54_RS12280	0.61	+0.1
2,731,766	-		LRK54_RS12280	0.61	+0.8
2,731,766	-		LRK54_RS12280	0.61	-1.0
2,731,766	-		LRK54_RS12280	0.61	+0.3
2,731,766	-		LRK54_RS12280	0.61	-1.3
2,731,766	-		LRK54_RS12280	0.61	-0.7
2,731,766	-		LRK54_RS12280	0.61	-0.9
2,731,766	-		LRK54_RS12280	0.61	+0.4
2,731,766	-		LRK54_RS12280	0.61	-0.1
2,731,767	+		LRK54_RS12280	0.61	+0.8
2,731,767	+		LRK54_RS12280	0.61	+0.5
2,731,767	+		LRK54_RS12280	0.61	+1.2
2,731,767	+		LRK54_RS12280	0.61	+1.5
2,731,767	+		LRK54_RS12280	0.61	+0.2
2,731,767	+		LRK54_RS12280	0.61	+0.5
2,731,767	+		LRK54_RS12280	0.61	+0.7
2,731,767	+		LRK54_RS12280	0.61	-1.2
2,731,767	+		LRK54_RS12280	0.61	-0.3
2,731,767	+		LRK54_RS12280	0.61	-0.9
2,731,767	+		LRK54_RS12280	0.61	-0.3
2,731,767	+		LRK54_RS12280	0.61	-0.1
2,731,767	+		LRK54_RS12280	0.61	+0.8
2,731,767	+		LRK54_RS12280	0.61	-0.6
2,731,767	+		LRK54_RS12280	0.61	+0.1
2,731,767	+		LRK54_RS12280	0.61	+0.4
2,731,767	+		LRK54_RS12280	0.61	+0.4
2,731,767	+		LRK54_RS12280	0.61	-0.7
2,731,767	+		LRK54_RS12280	0.61	+1.4
2,731,767	+		LRK54_RS12280	0.61	-0.2
2,731,767	+		LRK54_RS12280	0.61	-0.5
2,731,767	+		LRK54_RS12280	0.61	-0.0
2,731,767	+		LRK54_RS12280	0.61	+2.2
2,731,768	-		LRK54_RS12280	0.61	+0.2
2,731,768	-		LRK54_RS12280	0.61	-0.4
2,731,768	-		LRK54_RS12280	0.61	+1.3
2,731,768	-		LRK54_RS12280	0.61	+0.2
2,731,768	-		LRK54_RS12280	0.61	-0.5
2,731,768	-		LRK54_RS12280	0.61	+0.0
2,731,768	-		LRK54_RS12280	0.61	+0.4
2,731,768	-		LRK54_RS12280	0.61	+0.8
2,731,768	-		LRK54_RS12280	0.61	-0.5
2,731,768	-		LRK54_RS12280	0.61	+2.1
2,731,768	-		LRK54_RS12280	0.61	+0.1
2,731,768	-		LRK54_RS12280	0.61	-0.0
2,731,768	-		LRK54_RS12280	0.61	+1.2
2,731,768	-		LRK54_RS12280	0.61	-0.9
2,731,768	-		LRK54_RS12280	0.61	+0.4
2,731,768	-		LRK54_RS12280	0.61	+0.2
2,731,768	-		LRK54_RS12280	0.61	+0.1
2,731,768	-		LRK54_RS12280	0.61	-0.4
2,731,768	-		LRK54_RS12280	0.61	+0.6
2,731,768	-		LRK54_RS12280	0.61	+0.2
2,731,768	-		LRK54_RS12280	0.61	+0.4
2,731,768	-		LRK54_RS12280	0.61	-0.1
2,731,768	-		LRK54_RS12280	0.61	-0.7
2,731,768	-		LRK54_RS12280	0.61	+1.4
2,731,768	-		LRK54_RS12280	0.61	+0.1
2,731,768	-		LRK54_RS12280	0.61	-0.2
2,731,768	-		LRK54_RS12280	0.61	-1.7
2,731,768	-		LRK54_RS12280	0.61	+0.0
2,731,768	-		LRK54_RS12280	0.61	-0.1
2,731,768	-		LRK54_RS12280	0.61	+0.4
2,731,768	-		LRK54_RS12280	0.61	+0.2
2,731,768	-		LRK54_RS12280	0.61	+0.0
2,731,768	-		LRK54_RS12280	0.61	+0.3
2,731,768	-		LRK54_RS12280	0.61	-0.2
2,731,768	-		LRK54_RS12280	0.61	+0.5
2,731,768	-		LRK54_RS12280	0.61	-0.2
2,731,768	-		LRK54_RS12280	0.61	+1.7
2,731,768	-		LRK54_RS12280	0.61	-1.5
2,731,768	-		LRK54_RS12280	0.61	+0.3
2,731,768	-		LRK54_RS12280	0.61	+0.4
2,731,768	-		LRK54_RS12280	0.61	-0.4
2,731,768	-		LRK54_RS12280	0.61	+0.5
2,731,768	-		LRK54_RS12280	0.61	+0.6
2,731,768	-		LRK54_RS12280	0.61	+0.5
2,731,768	-		LRK54_RS12280	0.61	+0.8
2,731,777	+		LRK54_RS12280	0.62	+0.6
2,731,777	+		LRK54_RS12280	0.62	+0.0
2,731,778	-		LRK54_RS12280	0.62	+0.0
2,731,778	-		LRK54_RS12280	0.62	+0.2
2,731,778	-		LRK54_RS12280	0.62	+0.5
2,731,778	-		LRK54_RS12280	0.62	-2.5
2,731,825	-		LRK54_RS12280	0.67	+0.2
2,731,862	+		LRK54_RS12280	0.71	+0.1
2,731,862	+		LRK54_RS12280	0.71	-0.2
2,731,862	+		LRK54_RS12280	0.71	+0.5
2,731,863	-		LRK54_RS12280	0.71	-1.8
2,731,863	-		LRK54_RS12280	0.71	-0.1
2,731,863	-		LRK54_RS12280	0.71	-0.1
2,731,912	+		LRK54_RS12280	0.76	-0.1
2,731,912	+		LRK54_RS12280	0.76	-0.0
2,731,948	+		LRK54_RS12280	0.80	+0.8
2,731,948	+		LRK54_RS12280	0.80	-0.2
2,731,948	+		LRK54_RS12280	0.80	-0.9
2,731,948	+		LRK54_RS12280	0.80	-0.6
2,731,948	+		LRK54_RS12280	0.80	+1.3
2,731,948	+		LRK54_RS12280	0.80	-0.7
2,731,948	+		LRK54_RS12280	0.80	+0.3
2,731,948	+		LRK54_RS12280	0.80	+0.7
2,731,948	+		LRK54_RS12280	0.80	+1.8
2,731,948	+		LRK54_RS12280	0.80	+0.3
2,731,948	+		LRK54_RS12280	0.80	-0.5
2,731,948	+		LRK54_RS12280	0.80	+0.7
2,731,948	+		LRK54_RS12280	0.80	-1.1
2,731,949	-		LRK54_RS12280	0.80	-0.6
2,731,949	-		LRK54_RS12280	0.80	-0.6
2,731,949	-		LRK54_RS12280	0.80	+0.4
2,731,949	-		LRK54_RS12280	0.80	+0.5
2,731,949	-		LRK54_RS12280	0.80	-0.2
2,731,949	-		LRK54_RS12280	0.80	-0.6
2,731,949	-		LRK54_RS12280	0.80	+0.6
2,731,949	-		LRK54_RS12280	0.80	+0.3
2,731,949	-		LRK54_RS12280	0.80	-0.5
2,731,949	-		LRK54_RS12280	0.80	-0.3
2,731,949	-		LRK54_RS12280	0.80	+1.0
2,731,949	-		LRK54_RS12280	0.80	+1.2
2,731,949	-		LRK54_RS12280	0.80	-0.6
2,731,949	-		LRK54_RS12280	0.80	+0.3
2,731,949	-		LRK54_RS12280	0.80	+0.1
2,731,949	-		LRK54_RS12280	0.80	+0.9
2,731,949	-		LRK54_RS12280	0.80	-0.8
2,731,960	+		LRK54_RS12280	0.82	-1.8
2,731,960	+		LRK54_RS12280	0.82	+0.2
2,731,961	-		LRK54_RS12280	0.82	-0.1
2,731,961	-		LRK54_RS12280	0.82	+0.4
2,731,961	-		LRK54_RS12280	0.82	-0.4
2,732,080	+				+0.1
2,732,080	+				+1.2
2,732,080	+				+0.4
2,732,081	-				+0.9
2,732,081	-				-0.0
2,732,081	-				+0.5
2,732,081	-				+0.1
2,732,081	-				-0.5
2,732,081	-				+0.4
2,732,081	-				+0.1
2,732,260	+				-0.1
2,732,260	+				+0.3
2,732,260	+				-0.9
2,732,260	+				-0.5
2,732,260	+				+0.7
2,732,260	+				+1.5
2,732,260	+				+0.4
2,732,260	+				+0.2
2,732,260	+				+0.3
2,732,260	+				+0.8
2,732,260	+				-0.8
2,732,260	+				+0.5
2,732,260	+				-1.1
2,732,260	+				-0.7
2,732,260	+				+0.5
2,732,260	+				-1.3
2,732,260	+				-0.9
2,732,260	+				-0.9
2,732,260	+				-0.1
2,732,260	+				-0.4
2,732,260	+				-1.1
2,732,260	+				-1.4
2,732,260	+				-0.0
2,732,260	+				+0.6
2,732,260	+				-0.7
2,732,260	+				-1.8
2,732,260	+				-0.8
2,732,260	+				-0.5
2,732,260	+				+0.1
2,732,260	+				+0.8
2,732,260	+				-0.9
2,732,260	+				+0.5
2,732,260	+				+0.4
2,732,260	+				-0.1
2,732,260	+				-0.3
2,732,260	+				-0.4
2,732,260	+				-0.0
2,732,260	+				-0.7
2,732,260	+				-1.3
2,732,260	+				-0.9
2,732,260	+				-0.8
2,732,260	+				-1.1
2,732,260	+				-0.2
2,732,260	+				-1.4
2,732,260	+				-0.6
2,732,260	+				-0.3
2,732,260	+				-0.3
2,732,260	+				-1.1
2,732,260	+				-0.1
2,732,260	+				+1.3
2,732,260	+				-0.5
2,732,260	+				-0.8
2,732,260	+				-0.4
2,732,260	+				-0.8
2,732,260	+				-0.2
2,732,260	+				-0.4
2,732,260	+				-0.8
2,732,263	+				-0.4
2,732,263	+				-0.4
2,732,263	+				-0.5
2,732,263	+				-0.3
2,732,263	+				+0.8
2,732,263	+				-0.7
2,732,263	+				-0.8
2,732,263	+				-0.2
2,732,263	+				-0.2
2,732,263	+				-2.7
2,732,263	+				+0.4
2,732,263	+				-0.1
2,732,263	+				-1.9
2,732,263	+				-2.5
2,732,263	+				-0.3
2,732,263	+				+1.4
2,732,263	+				+0.1
2,732,263	+				+0.0
2,732,263	+				-0.8
2,732,263	+				+0.1
2,732,263	+				+0.8
2,732,263	+				-0.9
2,732,263	+				+0.8
2,732,263	+				-1.3
2,732,263	+				-1.4
2,732,263	+				-0.3
2,732,263	+				-0.9