Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12180

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
2,708,759	+		LRK54_RS12175	0.33	-0.9
2,708,760	-		LRK54_RS12175	0.33	-0.2
2,708,760	-		LRK54_RS12175	0.33	-0.0
2,708,994	+		LRK54_RS12175	0.51	-0.9
2,708,995	-		LRK54_RS12175	0.51	-0.8
2,709,105	+		LRK54_RS12175	0.59	-0.2
2,709,204	+		LRK54_RS12175	0.66	+0.2
2,709,204	+		LRK54_RS12175	0.66	-0.6
2,709,204	+		LRK54_RS12175	0.66	+1.2
2,709,205	-		LRK54_RS12175	0.66	-0.3
2,709,205	-		LRK54_RS12175	0.66	-0.3
2,709,205	-		LRK54_RS12175	0.66	-0.1
2,709,205	-		LRK54_RS12175	0.66	-0.1
2,709,205	-		LRK54_RS12175	0.66	+1.8
2,709,205	-		LRK54_RS12175	0.66	-0.3
2,709,454	+		LRK54_RS12175	0.84	-1.4
2,709,539	+				-1.8
2,709,539	+				-1.0
2,709,539	+				+0.1
2,709,539	+				+0.2
2,709,539	+				-1.0
2,709,539	+				+0.2
2,709,539	+				-0.2
2,709,539	+				-0.0
2,709,540	-				+1.4
2,709,540	-				+0.2
2,709,540	-				-0.6
2,709,540	-				-0.2
2,709,540	-				-0.5
2,709,540	-				-0.5
2,709,540	-				+0.2
2,709,540	-				-0.6
2,709,540	-				+0.2
2,709,540	-				-0.5
2,709,540	-				-0.7
2,709,540	-				+0.2
2,709,540	-				+0.3
2,709,684	+				+0.2
2,709,684	+				+0.8
2,709,684	+				-0.1
2,709,684	+				-0.8
2,709,684	+				-0.3
2,709,684	+				-0.7
2,709,684	+				+0.2
2,709,684	+				-0.3
2,709,684	+				+0.6
2,709,684	+				-0.1
2,709,685	-				+0.8
2,709,685	-				+0.4
2,709,685	-				+0.7
2,709,685	-				-3.8
2,709,685	-				+0.9
2,709,685	-				+0.4
2,709,685	-				+0.1
2,709,685	-				-0.7
2,709,685	-				+0.3
2,709,685	-				-0.0
2,709,685	-				+1.2
2,709,808	+		LRK54_RS12180	0.17	-0.2
2,709,808	+		LRK54_RS12180	0.17	+0.5
2,709,808	+		LRK54_RS12180	0.17	+1.1
2,709,809	-		LRK54_RS12180	0.17	-0.0
2,709,809	-		LRK54_RS12180	0.17	-0.2
2,709,809	-		LRK54_RS12180	0.17	+0.3
2,709,809	-		LRK54_RS12180	0.17	+0.2
2,709,809	-		LRK54_RS12180	0.17	+0.5
2,710,020	+		LRK54_RS12180	0.76	+1.1
2,710,021	+		LRK54_RS12180	0.77	+0.4
2,710,021	+		LRK54_RS12180	0.77	+1.4
2,710,021	+		LRK54_RS12180	0.77	-0.2
2,710,021	+		LRK54_RS12180	0.77	-0.2
2,710,021	+		LRK54_RS12180	0.77	-0.9
2,710,021	+		LRK54_RS12180	0.77	+0.8
2,710,021	+		LRK54_RS12180	0.77	+1.4
2,710,021	+		LRK54_RS12180	0.77	+0.4
2,710,021	+		LRK54_RS12180	0.77	+1.1
2,710,021	+		LRK54_RS12180	0.77	-0.6
2,710,021	+		LRK54_RS12180	0.77	+1.8
2,710,021	+		LRK54_RS12180	0.77	-2.2
2,710,021	+		LRK54_RS12180	0.77	-0.3
2,710,021	+		LRK54_RS12180	0.77	-0.4
2,710,022	-		LRK54_RS12180	0.77	+0.2
2,710,022	-		LRK54_RS12180	0.77	+1.4
2,710,022	-		LRK54_RS12180	0.77	+0.4
2,710,022	-		LRK54_RS12180	0.77	+1.0
2,710,022	-		LRK54_RS12180	0.77	-0.4
2,710,022	-		LRK54_RS12180	0.77	+0.5
2,710,022	-		LRK54_RS12180	0.77	-0.0
2,710,022	-		LRK54_RS12180	0.77	+0.2
2,710,022	-		LRK54_RS12180	0.77	+0.1
2,710,022	-		LRK54_RS12180	0.77	-0.2
2,710,022	-		LRK54_RS12180	0.77	+0.6
2,710,022	-		LRK54_RS12180	0.77	+0.2
2,710,022	-		LRK54_RS12180	0.77	+0.7
2,710,022	-		LRK54_RS12180	0.77	-0.1
2,710,022	-		LRK54_RS12180	0.77	-0.6
2,710,022	-		LRK54_RS12180	0.77	-0.3
2,710,022	-		LRK54_RS12180	0.77	-0.3
2,710,022	-		LRK54_RS12180	0.77	+0.2
2,710,314	+		LRK54_RS12185	0.11	-2.0
2,710,314	+		LRK54_RS12185	0.11	-0.7
2,710,314	+		LRK54_RS12185	0.11	-1.0
2,710,314	+		LRK54_RS12185	0.11	+0.2
2,710,314	+		LRK54_RS12185	0.11	-3.0
2,710,314	+		LRK54_RS12185	0.11	-2.4
2,710,314	+		LRK54_RS12185	0.11	-0.3
2,710,314	+		LRK54_RS12185	0.11	-1.2
2,710,314	+		LRK54_RS12185	0.11	-0.3
2,710,314	+		LRK54_RS12185	0.11	-0.1
2,710,314	+		LRK54_RS12185	0.11	-0.6
2,710,314	+		LRK54_RS12185	0.11	-1.3
2,710,314	+		LRK54_RS12185	0.11	+1.0
2,710,314	+		LRK54_RS12185	0.11	-0.9
2,710,314	+		LRK54_RS12185	0.11	-0.8
2,710,314	+		LRK54_RS12185	0.11	+0.2
2,710,314	+		LRK54_RS12185	0.11	-0.9
2,710,314	+		LRK54_RS12185	0.11	-0.4
2,710,314	+		LRK54_RS12185	0.11	-0.7
2,710,314	+		LRK54_RS12185	0.11	+0.3
2,710,314	+		LRK54_RS12185	0.11	-0.6
2,710,314	+		LRK54_RS12185	0.11	-0.2
2,710,314	+		LRK54_RS12185	0.11	-1.3
2,710,315	-		LRK54_RS12185	0.11	-1.6
2,710,315	-		LRK54_RS12185	0.11	+0.6
2,710,315	-		LRK54_RS12185	0.11	+1.8
2,710,315	-		LRK54_RS12185	0.11	-0.2
2,710,315	-		LRK54_RS12185	0.11	-0.0
2,710,315	-		LRK54_RS12185	0.11	-0.2
2,710,315	-		LRK54_RS12185	0.11	-0.5
2,710,315	-		LRK54_RS12185	0.11	-1.1
2,710,315	-		LRK54_RS12185	0.11	-1.4
2,710,315	-		LRK54_RS12185	0.11	+2.1
2,710,315	-		LRK54_RS12185	0.11	+1.2
2,710,315	-		LRK54_RS12185	0.11	+1.8
2,710,315	-		LRK54_RS12185	0.11	+0.5
2,710,315	-		LRK54_RS12185	0.11	-0.7
2,710,315	-		LRK54_RS12185	0.11	-1.6
2,710,315	-		LRK54_RS12185	0.11	-0.5
2,710,315	-		LRK54_RS12185	0.11	+0.6
2,710,315	-		LRK54_RS12185	0.11	-1.4
2,710,315	-		LRK54_RS12185	0.11	-0.4
2,710,315	-		LRK54_RS12185	0.11	-0.7
2,710,315	-		LRK54_RS12185	0.11	-2.2
2,710,334	+		LRK54_RS12185	0.12	+1.0
2,710,347	+		LRK54_RS12185	0.13	+0.5
2,710,347	+		LRK54_RS12185	0.13	+0.4
2,710,536	+		LRK54_RS12185	0.22	+0.7
2,710,536	+		LRK54_RS12185	0.22	-1.0
2,710,537	-		LRK54_RS12185	0.22	-0.5
2,710,537	-		LRK54_RS12185	0.22	-0.4
2,710,537	-		LRK54_RS12185	0.22	-0.9
2,710,761	+		LRK54_RS12185	0.34	-0.7
2,710,761	+		LRK54_RS12185	0.34	-0.4
2,710,761	+		LRK54_RS12185	0.34	-0.2
2,710,761	+		LRK54_RS12185	0.34	+1.0
2,710,762	-		LRK54_RS12185	0.34	-1.3
2,710,762	-		LRK54_RS12185	0.34	+0.7
2,710,881	+		LRK54_RS12185	0.40	-0.8
2,710,881	+		LRK54_RS12185	0.40	-0.6
2,710,881	+		LRK54_RS12185	0.40	+0.9
2,710,881	+		LRK54_RS12185	0.40	+0.2
2,710,881	+		LRK54_RS12185	0.40	-1.3
2,710,881	+		LRK54_RS12185	0.40	+2.1
2,710,881	+		LRK54_RS12185	0.40	-0.0
2,710,881	+		LRK54_RS12185	0.40	-0.2
2,710,881	+		LRK54_RS12185	0.40	+0.8
2,710,881	+		LRK54_RS12185	0.40	-0.4
2,710,881	+		LRK54_RS12185	0.40	-0.6
2,710,881	+		LRK54_RS12185	0.40	+0.1
2,710,882	-		LRK54_RS12185	0.40	-0.5
2,710,882	-		LRK54_RS12185	0.40	-0.9
2,710,882	-		LRK54_RS12185	0.40	-1.5
2,710,882	-		LRK54_RS12185	0.40	-1.0
2,710,882	-		LRK54_RS12185	0.40	-0.0
2,710,882	-		LRK54_RS12185	0.40	-0.4
2,710,882	-		LRK54_RS12185	0.40	+0.1
2,710,882	-		LRK54_RS12185	0.40	+0.8
2,710,882	-		LRK54_RS12185	0.40	-0.1
2,710,882	-		LRK54_RS12185	0.40	-0.8
2,710,882	-		LRK54_RS12185	0.40	-0.1
2,710,882	-		LRK54_RS12185	0.40	-0.5
2,710,882	-		LRK54_RS12185	0.40	+0.4
2,710,882	-		LRK54_RS12185	0.40	+0.2
2,710,882	-		LRK54_RS12185	0.40	-0.4
2,710,882	-		LRK54_RS12185	0.40	-2.2
2,710,882	-		LRK54_RS12185	0.40	-1.5
2,710,882	-		LRK54_RS12185	0.40	-1.1