Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12045

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
2,670,648	+		LRK54_RS12040	0.76	-0.5
2,670,648	+		LRK54_RS12040	0.76	+0.0
2,670,648	+		LRK54_RS12040	0.76	-0.0
2,670,649	-		LRK54_RS12040	0.76	-0.8
2,670,649	-		LRK54_RS12040	0.76	+1.2
2,670,649	-		LRK54_RS12040	0.76	+0.1
2,670,723	+		LRK54_RS12040	0.79	-1.5
2,670,723	+		LRK54_RS12040	0.79	+0.2
2,670,723	+		LRK54_RS12040	0.79	-0.8
2,670,723	+		LRK54_RS12040	0.79	-1.6
2,670,723	+		LRK54_RS12040	0.79	-1.5
2,670,723	+		LRK54_RS12040	0.79	-0.3
2,670,723	+		LRK54_RS12040	0.79	+1.1
2,670,723	+		LRK54_RS12040	0.79	+1.3
2,670,723	+		LRK54_RS12040	0.79	-0.5
2,670,723	+		LRK54_RS12040	0.79	-0.0
2,670,730	+		LRK54_RS12040	0.79	+0.5
2,670,730	+		LRK54_RS12040	0.79	-0.4
2,670,730	+		LRK54_RS12040	0.79	-0.8
2,670,730	+		LRK54_RS12040	0.79	-0.9
2,670,730	+		LRK54_RS12040	0.79	+0.1
2,670,730	+		LRK54_RS12040	0.79	+0.1
2,670,730	+		LRK54_RS12040	0.79	-0.8
2,670,731	-		LRK54_RS12040	0.79	-1.3
2,670,731	-		LRK54_RS12040	0.79	+0.0
2,670,731	-		LRK54_RS12040	0.79	-0.6
2,670,731	-		LRK54_RS12040	0.79	-0.3
2,670,731	-		LRK54_RS12040	0.79	-1.1
2,670,771	+		LRK54_RS12040	0.81	-1.5
2,670,771	+		LRK54_RS12040	0.81	+2.1
2,670,771	+		LRK54_RS12040	0.81	-0.8
2,670,771	+		LRK54_RS12040	0.81	-2.2
2,670,771	+		LRK54_RS12040	0.81	+1.4
2,670,771	+		LRK54_RS12040	0.81	+0.3
2,670,771	+		LRK54_RS12040	0.81	-1.1
2,670,771	+		LRK54_RS12040	0.81	-1.5
2,670,771	+		LRK54_RS12040	0.81	+0.3
2,670,771	+		LRK54_RS12040	0.81	-0.6
2,670,771	+		LRK54_RS12040	0.81	+0.5
2,670,771	+		LRK54_RS12040	0.81	-0.5
2,670,772	-		LRK54_RS12040	0.81	+0.0
2,670,772	-		LRK54_RS12040	0.81	+0.0
2,670,772	-		LRK54_RS12040	0.81	+0.5
2,670,853	+		LRK54_RS12040	0.84	-1.1
2,670,855	+		LRK54_RS12040	0.84	-0.4
2,670,855	+		LRK54_RS12040	0.84	-1.2
2,670,855	+		LRK54_RS12040	0.84	-1.8
2,670,855	+		LRK54_RS12040	0.84	+0.1
2,670,855	+		LRK54_RS12040	0.84	-0.0
2,670,855	+		LRK54_RS12040	0.84	+0.7
2,670,855	+		LRK54_RS12040	0.84	-0.0
2,670,856	-		LRK54_RS12040	0.84	+0.4
2,670,856	-		LRK54_RS12040	0.84	-0.7
2,670,856	-		LRK54_RS12040	0.84	+0.3
2,670,856	-		LRK54_RS12040	0.84	+0.4
2,670,891	+		LRK54_RS12040	0.85	+0.1
2,670,891	+		LRK54_RS12040	0.85	-0.5
2,670,891	+		LRK54_RS12040	0.85	+0.9
2,670,891	+		LRK54_RS12040	0.85	-1.8
2,670,891	+		LRK54_RS12040	0.85	+1.0
2,670,891	+		LRK54_RS12040	0.85	+0.9
2,670,891	+		LRK54_RS12040	0.85	+0.7
2,670,891	+		LRK54_RS12040	0.85	-1.1
2,670,892	-		LRK54_RS12040	0.85	-2.2
2,670,892	-		LRK54_RS12040	0.85	+0.1
2,670,892	-		LRK54_RS12040	0.85	+0.4
2,670,892	-		LRK54_RS12040	0.85	-0.4
2,670,892	-		LRK54_RS12040	0.85	+1.4
2,670,892	-		LRK54_RS12040	0.85	+0.2
2,670,892	-		LRK54_RS12040	0.85	+0.2
2,670,892	-		LRK54_RS12040	0.85	-0.1
2,670,892	-		LRK54_RS12040	0.85	-0.9
2,670,957	+		LRK54_RS12040	0.88	-0.7
2,670,957	+		LRK54_RS12040	0.88	-0.2
2,670,957	+		LRK54_RS12040	0.88	-0.5
2,670,957	+		LRK54_RS12040	0.88	-1.3
2,670,957	+		LRK54_RS12040	0.88	+0.0
2,670,957	+		LRK54_RS12040	0.88	+0.7
2,670,957	+		LRK54_RS12040	0.88	-0.2
2,670,957	+		LRK54_RS12040	0.88	+0.2
2,670,957	+		LRK54_RS12040	0.88	-0.2
2,670,957	+		LRK54_RS12040	0.88	-2.3
2,670,957	+		LRK54_RS12040	0.88	-0.1
2,670,958	-		LRK54_RS12040	0.88	-0.3
2,670,958	-		LRK54_RS12040	0.88	-0.2
2,670,958	-		LRK54_RS12040	0.88	-0.5
2,670,958	-		LRK54_RS12040	0.88	+0.5
2,670,958	-		LRK54_RS12040	0.88	+0.0
2,670,958	-		LRK54_RS12040	0.88	+0.4
2,670,958	-		LRK54_RS12040	0.88	+2.4
2,670,958	-		LRK54_RS12040	0.88	+0.4
2,670,958	-		LRK54_RS12040	0.88	-0.2
2,670,958	-		LRK54_RS12040	0.88	-1.3
2,670,966	+		LRK54_RS12040	0.88	-0.3
2,670,966	+		LRK54_RS12040	0.88	-0.2
2,670,966	+		LRK54_RS12040	0.88	-0.7
2,670,967	-		LRK54_RS12040	0.88	-1.5
2,670,967	-		LRK54_RS12040	0.88	-0.7
2,670,967	-		LRK54_RS12040	0.88	+0.7
2,671,269	+				-0.7
2,671,269	+				+1.7
2,671,269	+				+1.3
2,671,269	+				-0.6
2,671,270	-				-0.5
2,671,270	-				+0.2
2,671,270	-				+0.3
2,671,270	-				+0.8
2,671,270	-				+0.3
2,671,331	-				+0.0
2,671,402	+				-0.2
2,671,424	-				-0.4
2,671,839	+		LRK54_RS12045	0.26	-0.2
2,671,839	+		LRK54_RS12045	0.26	+1.7
2,671,840	-		LRK54_RS12045	0.26	+0.8
2,671,849	-		LRK54_RS12045	0.27	-0.8
2,671,938	+		LRK54_RS12045	0.35	-2.3
2,671,938	+		LRK54_RS12045	0.35	-0.6
2,672,157	+		LRK54_RS12045	0.56	+1.3
2,672,157	+		LRK54_RS12045	0.56	+0.6
2,672,158	-		LRK54_RS12045	0.56	+2.3
2,672,158	-		LRK54_RS12045	0.56	+0.6
2,672,158	-		LRK54_RS12045	0.56	+0.2
2,672,158	-		LRK54_RS12045	0.56	+1.0
2,672,158	-		LRK54_RS12045	0.56	-0.3
2,672,158	-		LRK54_RS12045	0.56	+0.5
2,672,601	+				-0.1
2,672,601	+				+0.1
2,672,601	+				+1.2
2,672,601	+				-0.8
2,672,602	-				-0.5
2,672,749	+				-1.3
2,672,750	-				-0.9
2,672,750	-				+1.8
2,672,750	-				+0.3
2,672,911	+		LRK54_RS12050	0.19	-1.4
2,672,911	+		LRK54_RS12050	0.19	-0.9
2,672,911	+		LRK54_RS12050	0.19	-1.1
2,672,911	+		LRK54_RS12050	0.19	-1.1
2,672,911	+		LRK54_RS12050	0.19	-0.6
2,672,911	+		LRK54_RS12050	0.19	-1.5
2,672,911	+		LRK54_RS12050	0.19	-1.1
2,672,911	+		LRK54_RS12050	0.19	-1.7
2,672,911	+		LRK54_RS12050	0.19	-1.6
2,672,911	+		LRK54_RS12050	0.19	+0.1
2,672,912	-		LRK54_RS12050	0.19	-0.8
2,672,912	-		LRK54_RS12050	0.19	-0.6
2,672,912	-		LRK54_RS12050	0.19	+0.6
2,672,912	-		LRK54_RS12050	0.19	-0.3
2,672,912	-		LRK54_RS12050	0.19	-0.4
2,672,912	-		LRK54_RS12050	0.19	-0.5
2,673,097	+		LRK54_RS12050	0.31	+1.3
2,673,098	+		LRK54_RS12050	0.31	+0.7
2,673,098	+		LRK54_RS12050	0.31	+0.5
2,673,098	+		LRK54_RS12050	0.31	+1.1
2,673,098	+		LRK54_RS12050	0.31	+0.6
2,673,098	+		LRK54_RS12050	0.31	+1.1
2,673,098	+		LRK54_RS12050	0.31	+0.7
2,673,098	+		LRK54_RS12050	0.31	-0.4
2,673,099	-		LRK54_RS12050	0.31	-0.5
2,673,099	-		LRK54_RS12050	0.31	-0.6
2,673,099	-		LRK54_RS12050	0.31	+0.3
2,673,099	-		LRK54_RS12050	0.31	-0.1
2,673,099	-		LRK54_RS12050	0.31	-0.1
2,673,099	-		LRK54_RS12050	0.31	+0.3
2,673,293	-		LRK54_RS12050	0.44	+0.7
2,673,293	-		LRK54_RS12050	0.44	-0.2
2,673,298	+		LRK54_RS12050	0.45	-0.1
2,673,298	+		LRK54_RS12050	0.45	+2.2
2,673,298	+		LRK54_RS12050	0.45	-0.3
2,673,298	+		LRK54_RS12050	0.45	-0.8
2,673,299	-		LRK54_RS12050	0.45	-0.2
2,673,299	-		LRK54_RS12050	0.45	+0.8
2,673,299	-		LRK54_RS12050	0.45	-2.1
2,673,299	-		LRK54_RS12050	0.45	-0.3
2,673,345	+		LRK54_RS12050	0.48	-1.4
2,673,345	+		LRK54_RS12050	0.48	-0.2
2,673,345	+		LRK54_RS12050	0.48	+0.1
2,673,345	+		LRK54_RS12050	0.48	-0.2
2,673,346	-		LRK54_RS12050	0.48	-1.0
2,673,346	-		LRK54_RS12050	0.48	+1.6
2,673,346	-		LRK54_RS12050	0.48	-0.7
2,673,346	-		LRK54_RS12050	0.48	-0.6
2,673,346	-		LRK54_RS12050	0.48	+0.0
2,673,499	+		LRK54_RS12050	0.58	-0.8
2,673,500	-		LRK54_RS12050	0.58	-0.4
2,673,500	-		LRK54_RS12050	0.58	+0.9
2,673,500	-		LRK54_RS12050	0.58	-0.1
2,673,500	-		LRK54_RS12050	0.58	-0.7
2,673,511	+		LRK54_RS12050	0.59	+0.1
2,673,511	+		LRK54_RS12050	0.59	+0.5
2,673,512	-		LRK54_RS12050	0.59	+0.8
2,673,512	-		LRK54_RS12050	0.59	+0.4
2,673,512	-		LRK54_RS12050	0.59	+0.9
2,673,559	+		LRK54_RS12050	0.62	-0.5
2,673,559	+		LRK54_RS12050	0.62	+1.6
2,673,560	-		LRK54_RS12050	0.62	-0.8
2,673,560	-		LRK54_RS12050	0.62	-0.2
2,673,560	-		LRK54_RS12050	0.62	+0.1
2,673,560	-		LRK54_RS12050	0.62	-1.7
2,673,560	-		LRK54_RS12050	0.62	-1.5
2,673,574	+		LRK54_RS12050	0.63	-1.6
2,673,574	+		LRK54_RS12050	0.63	-0.9
2,673,574	+		LRK54_RS12050	0.63	-0.1
2,673,574	+		LRK54_RS12050	0.63	-0.4
2,673,574	+		LRK54_RS12050	0.63	-0.6
2,673,574	+		LRK54_RS12050	0.63	-0.2
2,673,575	-		LRK54_RS12050	0.63	-0.5
2,673,575	-		LRK54_RS12050	0.63	+0.1
2,673,575	-		LRK54_RS12050	0.63	-0.4
2,673,575	-		LRK54_RS12050	0.63	+1.2
2,673,575	-		LRK54_RS12050	0.63	-0.1