Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11930

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
2,644,086	-				-0.5
2,644,133	+				-0.8
2,644,133	+				-0.9
2,644,133	+				+0.7
2,644,133	+				+0.2
2,644,133	+				+0.8
2,644,133	+				+0.4
2,644,133	+				+1.1
2,644,133	+				-0.1
2,644,133	+				-0.6
2,644,134	-				+0.6
2,644,134	-				-0.0
2,644,648	-				+0.4
2,644,752	+		LRK54_RS11925	0.85	-0.4
2,644,752	+		LRK54_RS11925	0.85	+0.0
2,644,752	+		LRK54_RS11925	0.85	-0.6
2,644,752	+		LRK54_RS11925	0.85	-0.7
2,644,752	+		LRK54_RS11925	0.85	-0.6
2,644,752	+		LRK54_RS11925	0.85	+0.9
2,644,753	-		LRK54_RS11925	0.85	-0.2
2,644,753	-		LRK54_RS11925	0.85	+0.2
2,644,772	+		LRK54_RS11925	0.88	-1.3
2,644,772	+		LRK54_RS11925	0.88	+0.1
2,644,773	-		LRK54_RS11925	0.88	-0.9
2,644,773	-		LRK54_RS11925	0.88	+0.4
2,644,773	-		LRK54_RS11925	0.88	-0.6
2,644,845	+				+0.8
2,644,845	+				+0.1
2,644,845	+				+0.0
2,644,845	+				+1.1
2,644,845	+				+0.6
2,644,845	+				+0.6
2,644,845	+				+1.4
2,644,845	+				-0.9
2,644,845	+				-0.8
2,644,845	+				+0.3
2,644,845	+				-0.6
2,644,845	+				-1.2
2,644,845	+				-0.2
2,644,846	-				-2.0
2,644,846	-				-0.7
2,644,846	-				-0.8
2,644,846	-				-1.1
2,644,846	-				+0.6
2,644,846	-				-0.5
2,644,846	-				-0.2
2,644,846	-				-0.5
2,644,846	-				-0.1
2,644,846	-				+0.4
2,644,846	-				-2.2
2,644,846	-				+0.7
2,644,846	-				+0.5
2,644,846	-				-0.1
2,644,846	-				+0.5
2,644,864	+				+0.1
2,644,864	+				+0.7
2,644,864	+				-1.6
2,644,865	-				-0.5
2,644,865	-				-0.2
2,645,030	+				-0.9
2,645,030	+				+0.4
2,645,030	+				-1.4
2,645,030	+				+0.2
2,645,030	+				-2.6
2,645,030	+				+0.4
2,645,030	+				-0.5
2,645,030	+				-1.8
2,645,030	+				+3.4
2,645,030	+				-0.2
2,645,030	+				+0.7
2,645,030	+				-0.6
2,645,030	+				-0.5
2,645,030	+				-0.4
2,645,030	+				-1.1
2,645,030	+				-0.2
2,645,030	+				+1.0
2,645,030	+				-1.5
2,645,030	+				-0.2
2,645,030	+				+0.4
2,645,030	+				-0.2
2,645,030	+				-0.2
2,645,030	+				-0.5
2,645,030	+				-0.8
2,645,030	+				-0.9
2,645,031	-				-0.0
2,645,031	-				+0.7
2,645,031	-				-0.9
2,645,031	-				-0.8
2,645,031	-				+0.8
2,645,031	-				-0.8
2,645,031	-				+1.2
2,645,031	-				-0.2
2,645,031	-				-0.1
2,645,031	-				-0.5
2,645,031	-				-0.6
2,645,031	-				+0.1
2,645,031	-				+0.1
2,645,031	-				+0.4
2,645,031	-				+1.2
2,645,031	-				+0.1
2,645,031	-				+0.9
2,645,031	-				+0.4
2,645,031	-				+1.1
2,645,031	-				-0.9
2,645,031	-				+0.4
2,645,031	-				-1.5
2,645,031	-				-0.4
2,645,031	-				-0.3
2,645,031	-				+1.9
2,645,031	-				-0.1
2,645,031	-				+2.4
2,645,031	-				-2.2
2,645,031	-				-0.7
2,645,031	-				+0.5
2,645,031	-				-1.6
2,645,031	-				-2.0
2,645,031	-				-0.8
2,645,031	-				-0.7
2,645,031	-				-0.2
2,645,031	-				+0.1
2,645,031	-				-0.9
2,645,031	-				-0.1
2,645,031	-				-0.7
2,645,031	-				+0.2
2,645,031	-				-2.3
2,645,304	+		LRK54_RS11930	0.20	-0.9
2,645,304	+		LRK54_RS11930	0.20	+0.5
2,645,305	-		LRK54_RS11930	0.21	-0.1
2,645,305	-		LRK54_RS11930	0.21	-0.2
2,645,305	-		LRK54_RS11930	0.21	+2.0
2,645,305	-		LRK54_RS11930	0.21	+1.0
2,645,493	+		LRK54_RS11930	0.35	+0.1
2,645,493	+		LRK54_RS11930	0.35	+1.3
2,645,493	+		LRK54_RS11930	0.35	-1.2
2,645,493	+		LRK54_RS11930	0.35	+1.0
2,645,493	+		LRK54_RS11930	0.35	+0.2
2,645,494	-		LRK54_RS11930	0.36	+0.5
2,645,688	+		LRK54_RS11930	0.51	-1.5
2,645,689	-		LRK54_RS11930	0.51	+0.1
2,645,853	+		LRK54_RS11930	0.64	+0.8
2,645,853	+		LRK54_RS11930	0.64	-1.9
2,645,853	+		LRK54_RS11930	0.64	+0.5
2,645,853	+		LRK54_RS11930	0.64	+0.4
2,645,853	+		LRK54_RS11930	0.64	+0.0
2,645,853	+		LRK54_RS11930	0.64	-0.5
2,645,853	+		LRK54_RS11930	0.64	+0.8
2,645,853	+		LRK54_RS11930	0.64	-0.5
2,645,853	+		LRK54_RS11930	0.64	+0.1
2,645,854	-		LRK54_RS11930	0.64	+1.6
2,645,854	-		LRK54_RS11930	0.64	-0.6
2,645,854	-		LRK54_RS11930	0.64	-1.9
2,645,854	-		LRK54_RS11930	0.64	+1.7
2,645,854	-		LRK54_RS11930	0.64	+0.2
2,645,854	-		LRK54_RS11930	0.64	-0.2
2,645,854	-		LRK54_RS11930	0.64	+0.1
2,645,854	-		LRK54_RS11930	0.64	+0.7
2,645,854	-		LRK54_RS11930	0.64	-0.1
2,645,854	-		LRK54_RS11930	0.64	+0.3
2,645,854	-		LRK54_RS11930	0.64	-0.5
2,645,854	-		LRK54_RS11930	0.64	+1.0
2,646,145	+		LRK54_RS11930	0.87	-0.6
2,646,146	-		LRK54_RS11930	0.87	-0.0
2,646,146	-		LRK54_RS11930	0.87	+0.3
2,646,195	+				-0.2
2,646,195	+				-1.5
2,646,195	+				-0.3
2,646,195	+				+0.3
2,646,195	+				+1.4
2,646,195	+				-0.7
2,646,195	+				+1.2
2,646,195	+				-0.0
2,646,196	-				-0.3
2,646,196	-				-0.5
2,646,196	-				+0.4
2,646,196	-				+1.1
2,646,196	-				-0.7
2,646,196	-				-0.6
2,646,196	-				+0.1
2,646,196	-				-2.1
2,646,196	-				-1.5
2,646,196	-				+1.8
2,646,196	-				+0.3
2,646,196	-				+0.4
2,646,196	-				+0.3
2,646,303	+				+1.1
2,646,304	-				+0.2
2,646,304	-				-1.0
2,646,304	-				-0.9
2,646,304	-				-0.3
2,646,304	-				-1.3
2,646,304	-				-1.2
2,646,304	-				+0.1
2,646,325	+				-0.4
2,646,325	+				+1.8
2,646,325	+				+2.0
2,646,325	+				+0.4
2,646,325	+				+1.0
2,646,325	+				-1.2
2,646,325	+				+0.2
2,646,325	+				+0.4
2,646,325	+				-1.3
2,646,325	+				-0.4
2,646,325	+				-0.3
2,646,325	+				-0.3
2,646,325	+				-0.6
2,646,325	+				-0.3
2,646,326	-				+1.1
2,646,326	-				-1.8
2,646,326	-				-0.3
2,646,326	-				+1.1
2,646,326	-				+1.8
2,646,326	-				-2.5
2,646,326	-				+0.3
2,646,326	-				-0.0
2,646,326	-				-1.2
2,646,326	-				-0.7
2,646,326	-				+0.8
2,646,326	-				+2.4
2,646,490	+				+1.2
2,646,490	+				-0.4
2,646,490	+				-1.7
2,646,490	+				+0.8
2,646,490	+				+0.4
2,646,490	+				-1.2
2,646,491	-				+0.7
2,646,491	-				-1.0
2,646,491	-				-0.1
2,646,491	-				+0.2
2,646,491	-				+0.4
2,646,491	-				-0.8
2,646,588	+		LRK54_RS11935	0.20	+0.0
2,646,589	-		LRK54_RS11935	0.20	+0.3
2,646,589	-		LRK54_RS11935	0.20	-1.3
2,646,733	+		LRK54_RS11935	0.41	-1.9
2,646,733	+		LRK54_RS11935	0.41	-0.1
2,646,733	+		LRK54_RS11935	0.41	+0.8
2,646,733	+		LRK54_RS11935	0.41	+0.5
2,646,733	+		LRK54_RS11935	0.41	-0.2
2,646,733	+		LRK54_RS11935	0.41	+0.6
2,646,734	-		LRK54_RS11935	0.41	-0.1
2,646,734	-		LRK54_RS11935	0.41	+1.0
2,646,734	-		LRK54_RS11935	0.41	+0.1
2,646,734	-		LRK54_RS11935	0.41	+1.4
2,646,734	-		LRK54_RS11935	0.41	+0.5
2,646,734	-		LRK54_RS11935	0.41	-0.1
2,647,079	-				+1.4
2,647,089	+				+1.7
2,647,089	+				-0.8
2,647,089	+				+0.2
2,647,089	+				+0.6
2,647,089	+				-0.4
2,647,090	-				+0.2
2,647,090	-				-0.1
2,647,090	-				-1.2
2,647,090	-				+0.4
2,647,154	+				+0.2
2,647,154	+				+1.8
2,647,154	+				-0.4
2,647,154	+				-0.2
2,647,154	+				-0.3
2,647,154	+				+0.7
2,647,154	+				+0.0
2,647,154	+				-0.1
2,647,154	+				+0.1
2,647,154	+				-0.0
2,647,154	+				-0.5
2,647,155	-				-1.1
2,647,155	-				-0.3
2,647,155	-				+1.5
2,647,155	-				-0.4
2,647,155	-				+0.8
2,647,155	-				-0.0
2,647,155	-				+0.8
2,647,155	-				-0.4
2,647,155	-				+0.4
2,647,155	-				-0.4
2,647,155	-				+0.0
2,647,155	-				+1.9
2,647,155	-				+0.5
2,647,155	-				-2.1