Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10270

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
2,261,806	+		LRK54_RS10265	0.58	+0.0
2,261,806	+		LRK54_RS10265	0.58	-1.6
2,261,806	+		LRK54_RS10265	0.58	-0.4
2,261,806	+				+0.1
2,261,807	-		LRK54_RS10265	0.58	+0.4
2,261,807	-		LRK54_RS10265	0.58	+1.6
2,261,807	-		LRK54_RS10265	0.58	+0.1
2,262,057	+		LRK54_RS10265	0.71	+1.1
2,262,057	+		LRK54_RS10265	0.71	-1.6
2,262,057	+		LRK54_RS10265	0.71	-0.1
2,262,057	+		LRK54_RS10265	0.71	+0.9
2,262,058	-		LRK54_RS10265	0.71	-0.1
2,262,058	-		LRK54_RS10265	0.71	-1.7
2,262,151	+		LRK54_RS10265	0.76	-0.0
2,262,151	+		LRK54_RS10265	0.76	+0.2
2,262,151	+		LRK54_RS10265	0.76	+0.6
2,262,151	+		LRK54_RS10265	0.76	+0.1
2,262,151	+		LRK54_RS10265	0.76	-0.8
2,262,152	-		LRK54_RS10265	0.76	-1.0
2,262,163	+		LRK54_RS10265	0.76	-0.2
2,262,163	+		LRK54_RS10265	0.76	-0.5
2,262,164	-		LRK54_RS10265	0.76	-0.4
2,262,164	-		LRK54_RS10265	0.76	-0.2
2,262,220	+		LRK54_RS10265	0.79	-0.1
2,262,220	+		LRK54_RS10265	0.79	-1.1
2,262,220	+		LRK54_RS10265	0.79	-0.0
2,262,220	+		LRK54_RS10265	0.79	+0.2
2,262,220	+		LRK54_RS10265	0.79	+1.0
2,262,220	+		LRK54_RS10265	0.79	+0.7
2,262,220	+		LRK54_RS10265	0.79	-0.2
2,262,220	+		LRK54_RS10265	0.79	-0.8
2,262,220	+		LRK54_RS10265	0.79	-0.1
2,262,220	+		LRK54_RS10265	0.79	-1.0
2,262,220	+		LRK54_RS10265	0.79	-2.5
2,262,220	+		LRK54_RS10265	0.79	+0.1
2,262,220	+		LRK54_RS10265	0.79	+0.5
2,262,220	+		LRK54_RS10265	0.79	+0.4
2,262,220	+		LRK54_RS10265	0.79	-1.4
2,262,220	+		LRK54_RS10265	0.79	+0.1
2,262,220	+		LRK54_RS10265	0.79	+0.1
2,262,220	+		LRK54_RS10265	0.79	+0.7
2,262,220	+		LRK54_RS10265	0.79	+0.1
2,262,221	-		LRK54_RS10265	0.79	-0.5
2,262,221	-		LRK54_RS10265	0.79	+0.4
2,262,221	-		LRK54_RS10265	0.79	+0.3
2,262,221	-		LRK54_RS10265	0.79	-2.1
2,262,221	-		LRK54_RS10265	0.79	-0.4
2,262,221	-		LRK54_RS10265	0.79	-0.2
2,262,221	-		LRK54_RS10265	0.79	+0.0
2,262,221	-		LRK54_RS10265	0.79	-0.1
2,262,221	-		LRK54_RS10265	0.79	+1.2
2,262,221	-		LRK54_RS10265	0.79	-0.7
2,262,221	-		LRK54_RS10265	0.79	-0.2
2,262,221	-		LRK54_RS10265	0.79	-1.7
2,262,260	-		LRK54_RS10265	0.81	-0.7
2,262,322	+		LRK54_RS10265	0.84	+0.2
2,262,322	+		LRK54_RS10265	0.84	+0.1
2,262,322	+		LRK54_RS10265	0.84	+0.4
2,262,322	+		LRK54_RS10265	0.84	-0.6
2,262,322	+		LRK54_RS10265	0.84	+0.2
2,262,322	+		LRK54_RS10265	0.84	-0.4
2,262,322	+		LRK54_RS10265	0.84	+0.6
2,262,322	+		LRK54_RS10265	0.84	+1.4
2,262,322	+		LRK54_RS10265	0.84	-0.9
2,262,322	+		LRK54_RS10265	0.84	-0.9
2,262,322	+		LRK54_RS10265	0.84	-1.9
2,262,322	+		LRK54_RS10265	0.84	-0.3
2,262,322	+		LRK54_RS10265	0.84	-0.9
2,262,322	+		LRK54_RS10265	0.84	+0.2
2,262,323	-		LRK54_RS10265	0.84	-2.2
2,262,323	-		LRK54_RS10265	0.84	+2.4
2,262,323	-		LRK54_RS10265	0.84	+1.3
2,262,323	-		LRK54_RS10265	0.84	-0.0
2,262,323	-		LRK54_RS10265	0.84	-1.7
2,262,323	-		LRK54_RS10265	0.84	+1.3
2,262,323	-		LRK54_RS10265	0.84	-1.9
2,262,323	-		LRK54_RS10265	0.84	-0.1
2,262,323	-		LRK54_RS10265	0.84	-1.0
2,262,323	-		LRK54_RS10265	0.84	+0.2
2,262,323	-		LRK54_RS10265	0.84	+0.4
2,262,323	-		LRK54_RS10265	0.84	+0.3
2,262,323	-		LRK54_RS10265	0.84	+0.3
2,262,323	-		LRK54_RS10265	0.84	-1.0
2,262,323	-		LRK54_RS10265	0.84	+0.6
2,262,323	-		LRK54_RS10265	0.84	-1.6
2,262,323	-		LRK54_RS10265	0.84	+0.3
2,262,393	+		LRK54_RS10265	0.88	-0.2
2,262,393	+		LRK54_RS10265	0.88	-0.6
2,262,393	+		LRK54_RS10265	0.88	+0.9
2,262,393	+		LRK54_RS10265	0.88	-0.1
2,262,487	+				+1.7
2,262,488	-				+0.3
2,262,488	-				+0.1
2,262,488	-				-1.0
2,262,488	-				+0.9
2,262,488	-				-1.4
2,262,491	+				+0.1
2,262,492	+				-0.1
2,262,492	+				+0.2
2,262,492	+				+1.0
2,262,492	+				-0.4
2,262,492	+				+0.6
2,262,492	+				-0.9
2,262,492	+				-0.1
2,262,492	+				-1.0
2,262,492	+				-0.3
2,262,492	+				+0.7
2,262,492	+				+1.6
2,262,492	+				-0.2
2,262,492	+				-0.0
2,262,492	+				-0.2
2,262,492	+				+0.6
2,262,493	-				-2.2
2,262,493	-				+0.6
2,262,493	-				-0.4
2,262,493	-				-0.2
2,262,493	-				-0.8
2,262,493	-				-0.4
2,262,493	-				-0.0
2,262,493	-				-0.5
2,262,493	-				-0.7
2,262,493	-				-0.1
2,262,493	-				-0.1
2,262,496	+				-0.1
2,262,496	+				-0.6
2,262,496	+				+0.2
2,262,496	+				-0.9
2,262,496	+				-0.1
2,262,496	+				+0.2
2,262,496	+				-1.4
2,262,496	+				+0.5
2,262,496	+				-0.2
2,262,496	+				-0.6
2,262,497	-				+0.5
2,262,497	-				+0.1
2,262,497	-				+0.6
2,262,497	-				+0.1
2,262,497	-				+0.2
2,262,497	-				+1.7
2,262,497	-				+0.4
2,262,497	-				-1.6
2,262,700	+				+1.3
2,262,700	+				-0.7
2,262,700	+				-0.4
2,262,700	+				-0.4
2,262,700	+				-0.1
2,262,700	+				+0.2
2,262,700	+				-0.6
2,262,700	+				+0.8
2,262,700	+				-0.2
2,262,700	+				+0.5
2,262,700	+				+0.0
2,262,700	+				+2.2
2,262,700	+				-0.7
2,262,700	+				+0.6
2,262,700	+				+0.6
2,262,700	+				+0.7
2,262,700	+				-0.1
2,262,700	+				-1.0
2,262,701	-				+0.6
2,262,701	-				+0.2
2,262,701	-				-0.7
2,262,701	-				-1.1
2,262,701	-				-1.0
2,262,701	-				+0.6
2,262,701	-				-0.7
2,262,701	-				+0.5
2,262,701	-				-0.0
2,262,701	-				-0.4
2,262,701	-				+0.3
2,262,701	-				+0.1
2,262,701	-				-0.1
2,262,701	-				-1.3
2,262,701	-				+0.1
2,262,701	-				-0.6
2,262,726	+				+1.7
2,262,748	-				-0.8
2,262,748	-				-0.1
2,263,057	+		LRK54_RS10270	0.39	+0.3
2,263,058	-		LRK54_RS10270	0.39	+0.8
2,263,058	-		LRK54_RS10270	0.39	-1.1
2,263,189	+		LRK54_RS10270	0.57	-1.6
2,263,189	+		LRK54_RS10270	0.57	+0.0
2,263,189	+		LRK54_RS10270	0.57	+1.1
2,263,189	+		LRK54_RS10270	0.57	+0.1
2,263,190	-		LRK54_RS10270	0.57	+0.6
2,263,520	+				+2.4
2,263,630	+		LRK54_RS10275	0.24	+1.5
2,263,630	+		LRK54_RS10275	0.24	+0.2
2,263,630	+		LRK54_RS10275	0.24	+0.5
2,263,630	+		LRK54_RS10275	0.24	+2.7
2,263,630	+		LRK54_RS10275	0.24	+0.3
2,263,631	-		LRK54_RS10275	0.24	-0.4
2,263,631	-		LRK54_RS10275	0.24	-0.2
2,263,631	-		LRK54_RS10275	0.24	-1.2
2,263,631	-		LRK54_RS10275	0.24	+0.7
2,263,693	+		LRK54_RS10275	0.43	-0.9
2,263,736	-		LRK54_RS10275	0.56	+0.2
2,263,736	-		LRK54_RS10275	0.56	-0.8
2,263,774	+		LRK54_RS10275	0.67	+0.0
2,263,774	+		LRK54_RS10275	0.67	-2.0
2,263,774	+		LRK54_RS10275	0.67	-1.2
2,263,774	+		LRK54_RS10275	0.67	-0.7
2,263,775	-		LRK54_RS10275	0.67	+0.1
2,263,775	-		LRK54_RS10275	0.67	+0.6
2,263,775	-		LRK54_RS10275	0.67	-0.7
2,263,775	-		LRK54_RS10275	0.67	+1.1
2,263,778	-		LRK54_RS10275	0.68	-1.0
2,263,825	+		LRK54_RS10275	0.82	-0.9
2,263,825	+		LRK54_RS10275	0.82	-1.3
2,263,825	+		LRK54_RS10275	0.82	+0.4
2,263,825	+		LRK54_RS10275	0.82	+0.2
2,263,826	-		LRK54_RS10275	0.82	-0.5
2,263,826	-		LRK54_RS10275	0.82	-1.7
2,263,826	-		LRK54_RS10275	0.82	-0.6
2,263,863	+				-0.1
2,263,863	+				+0.1
2,263,863	+				-0.7
2,263,864	-				-0.8
2,263,864	-				+0.4
2,263,957	-		LRK54_RS10280	0.16	+0.2
2,264,008	+		LRK54_RS10280	0.26	-0.5
2,264,008	+		LRK54_RS10280	0.26	+0.6
2,264,009	-		LRK54_RS10280	0.26	-0.3
2,264,319	+		LRK54_RS10280	0.85	+1.1
2,264,320	-		LRK54_RS10280	0.85	+0.5
2,264,320	-		LRK54_RS10280	0.85	-0.1
2,264,320	-		LRK54_RS10280	0.85	-0.7
2,264,320	-		LRK54_RS10280	0.85	-2.1
2,264,320	-		LRK54_RS10280	0.85	-0.1
2,264,320	-		LRK54_RS10280	0.85	-1.2
2,264,347	+				-0.0
2,264,348	-				-0.5
2,264,367	+				+1.1
2,264,367	+				-0.7
2,264,368	-				-0.3
2,264,368	-				-0.4
2,264,368	-				+0.5
2,264,368	-				-0.8