Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09980

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
2,189,869	+				-1.0
2,189,869	+				+1.1
2,189,870	-				-0.5
2,189,870	-				-0.3
2,189,870	-				+0.5
2,189,876	+				-0.2
2,189,876	+				+0.5
2,189,876	+				+0.4
2,189,876	+				-0.0
2,189,876	+				+0.2
2,189,876	+				+0.1
2,189,877	-				+3.5
2,189,877	-				-0.9
2,189,877	-				+1.8
2,189,877	-				-0.3
2,189,877	-				-1.8
2,190,048	+		LRK54_RS09970	0.32	-0.7
2,190,048	+		LRK54_RS09970	0.32	+0.9
2,190,048	+		LRK54_RS09970	0.32	-0.1
2,190,048	+		LRK54_RS09970	0.32	+1.1
2,190,048	+		LRK54_RS09970	0.32	-1.1
2,190,048	+		LRK54_RS09970	0.32	+0.3
2,190,049	-		LRK54_RS09970	0.33	+0.1
2,190,049	-		LRK54_RS09970	0.33	+0.0
2,190,049	-		LRK54_RS09970	0.33	-0.0
2,190,049	-		LRK54_RS09970	0.33	-1.9
2,190,049	-		LRK54_RS09970	0.33	-0.2
2,190,050	-		LRK54_RS09970	0.33	+0.1
2,190,099	+		LRK54_RS09970	0.44	-1.0
2,190,099	+		LRK54_RS09970	0.44	+0.7
2,190,099	+		LRK54_RS09970	0.44	+1.9
2,190,099	+		LRK54_RS09970	0.44	-0.1
2,190,099	+		LRK54_RS09970	0.44	-0.1
2,190,099	+		LRK54_RS09970	0.44	-2.8
2,190,099	+		LRK54_RS09970	0.44	+0.9
2,190,099	+		LRK54_RS09970	0.44	+1.1
2,190,099	+		LRK54_RS09970	0.44	+0.1
2,190,100	-		LRK54_RS09970	0.45	-0.7
2,190,100	-		LRK54_RS09970	0.45	-0.4
2,190,100	-		LRK54_RS09970	0.45	+0.2
2,190,100	-		LRK54_RS09970	0.45	+0.5
2,190,100	-		LRK54_RS09970	0.45	-0.8
2,190,100	-		LRK54_RS09970	0.45	+0.8
2,190,100	-		LRK54_RS09970	0.45	-1.2
2,190,100	-		LRK54_RS09970	0.45	-0.7
2,190,100	-		LRK54_RS09970	0.45	+2.1
2,190,100	-		LRK54_RS09970	0.45	-1.4
2,190,100	-		LRK54_RS09970	0.45	+0.5
2,190,237	+		LRK54_RS09970	0.77	-1.2
2,190,237	+		LRK54_RS09970	0.77	+0.9
2,190,238	-		LRK54_RS09970	0.77	+0.4
2,190,238	-		LRK54_RS09970	0.77	-0.1
2,190,238	-		LRK54_RS09970	0.77	-0.3
2,190,273	+		LRK54_RS09970	0.85	-0.9
2,190,274	-		LRK54_RS09970	0.85	+0.1
2,190,274	-		LRK54_RS09970	0.85	-0.4
2,190,274	-		LRK54_RS09970	0.85	-1.0
2,190,274	-		LRK54_RS09970	0.85	-1.1
2,190,274	-		LRK54_RS09970	0.85	-1.0
2,190,306	+				-0.1
2,190,306	+				-1.8
2,190,323	+				-0.3
2,190,323	+				-1.7
2,190,324	-				+0.7
2,190,324	-				-0.3
2,190,324	-				-0.3
2,190,324	-				+0.9
2,190,324	-				-1.1
2,190,324	-				-0.5
2,190,324	-				+0.2
2,190,333	+				+0.7
2,190,333	+				-0.7
2,190,333	+				+0.2
2,190,333	+				+1.0
2,190,333	+				-0.5
2,190,333	+				-0.5
2,190,333	+				+0.4
2,190,333	+				-0.3
2,190,334	-				+0.1
2,190,334	-				-0.6
2,190,334	-				-1.2
2,190,334	-				-0.0
2,190,334	-				+0.7
2,190,334	-				+0.9
2,190,334	-				-0.3
2,190,334	-				-0.7
2,190,334	-				-2.3
2,190,334	-				+1.6
2,190,568	+		LRK54_RS09975	0.45	+2.5
2,190,568	+		LRK54_RS09975	0.45	+0.1
2,190,568	+		LRK54_RS09975	0.45	+0.8
2,190,568	+		LRK54_RS09975	0.45	+0.7
2,190,568	+		LRK54_RS09975	0.45	-2.3
2,190,568	+		LRK54_RS09975	0.45	-1.4
2,190,568	+		LRK54_RS09975	0.45	+1.0
2,190,568	+		LRK54_RS09975	0.45	+1.1
2,190,568	+		LRK54_RS09975	0.45	+0.7
2,190,568	+		LRK54_RS09975	0.45	+0.5
2,190,568	+		LRK54_RS09975	0.45	+0.7
2,190,568	+		LRK54_RS09975	0.45	-0.7
2,190,568	+		LRK54_RS09975	0.45	-0.3
2,190,568	+		LRK54_RS09975	0.45	+0.1
2,190,569	-		LRK54_RS09975	0.45	-1.1
2,190,569	-		LRK54_RS09975	0.45	-2.0
2,190,569	-		LRK54_RS09975	0.45	-0.1
2,190,569	-		LRK54_RS09975	0.45	-0.3
2,190,569	-		LRK54_RS09975	0.45	+0.5
2,190,569	-		LRK54_RS09975	0.45	+0.3
2,190,618	+		LRK54_RS09975	0.57	-1.0
2,190,618	+		LRK54_RS09975	0.57	+0.9
2,190,618	+		LRK54_RS09975	0.57	+1.1
2,190,619	-		LRK54_RS09975	0.57	+0.4
2,191,029	+		LRK54_RS09980	0.55	+0.0
2,191,029	+		LRK54_RS09980	0.55	+0.0
2,191,029	+		LRK54_RS09980	0.55	-0.7
2,191,030	-		LRK54_RS09980	0.56	+2.2
2,191,101	+		LRK54_RS09980	0.72	-0.2
2,191,101	+		LRK54_RS09980	0.72	+0.0
2,191,101	+		LRK54_RS09980	0.72	+0.1
2,191,101	+		LRK54_RS09980	0.72	+0.9
2,191,101	+		LRK54_RS09980	0.72	+0.2
2,191,101	+		LRK54_RS09980	0.72	+1.5
2,191,102	-		LRK54_RS09980	0.73	-0.3
2,191,102	-		LRK54_RS09980	0.73	+0.4
2,191,102	-		LRK54_RS09980	0.73	+0.3
2,191,102	-		LRK54_RS09980	0.73	+0.4
2,191,178	+				+1.1
2,191,179	-				-0.2
2,191,292	+		LRK54_RS09985	0.12	-0.1
2,191,292	+		LRK54_RS09985	0.12	+2.5
2,191,292	+		LRK54_RS09985	0.12	-0.4
2,191,292	+		LRK54_RS09985	0.12	-0.4
2,191,292	+		LRK54_RS09985	0.12	+1.1
2,191,292	+		LRK54_RS09985	0.12	-0.1
2,191,292	+		LRK54_RS09985	0.12	-1.2
2,191,292	+		LRK54_RS09985	0.12	-0.5
2,191,292	+		LRK54_RS09985	0.12	-2.2
2,191,293	-		LRK54_RS09985	0.12	-0.1
2,191,293	-		LRK54_RS09985	0.12	-0.3
2,191,293	-		LRK54_RS09985	0.12	+0.5
2,191,293	-		LRK54_RS09985	0.12	-0.8
2,191,293	-		LRK54_RS09985	0.12	-1.7
2,191,293	-		LRK54_RS09985	0.12	+0.0
2,191,293	-		LRK54_RS09985	0.12	+0.0
2,191,293	-		LRK54_RS09985	0.12	-2.0
2,191,293	-		LRK54_RS09985	0.12	-0.3
2,191,293	-		LRK54_RS09985	0.12	+0.1
2,191,293	-		LRK54_RS09985	0.12	-0.8
2,191,448	+		LRK54_RS09985	0.36	-0.4
2,191,448	+		LRK54_RS09985	0.36	-0.3
2,191,448	+		LRK54_RS09985	0.36	-0.5
2,191,448	+		LRK54_RS09985	0.36	+0.5
2,191,448	+		LRK54_RS09985	0.36	-0.8
2,191,448	+		LRK54_RS09985	0.36	+0.9
2,191,448	+		LRK54_RS09985	0.36	-0.3
2,191,448	+		LRK54_RS09985	0.36	+0.9
2,191,448	+		LRK54_RS09985	0.36	-0.4
2,191,448	+		LRK54_RS09985	0.36	+0.5
2,191,448	+		LRK54_RS09985	0.36	+0.0
2,191,449	-		LRK54_RS09985	0.36	+0.8
2,191,449	-		LRK54_RS09985	0.36	-1.7
2,191,449	-		LRK54_RS09985	0.36	+0.6
2,191,449	-		LRK54_RS09985	0.36	+0.3
2,191,449	-		LRK54_RS09985	0.36	-0.4
2,191,449	-		LRK54_RS09985	0.36	+0.4
2,191,449	-		LRK54_RS09985	0.36	+0.8
2,191,478	+		LRK54_RS09985	0.40	+0.6
2,191,478	+		LRK54_RS09985	0.40	-0.5
2,191,478	+		LRK54_RS09985	0.40	+1.2
2,191,478	+		LRK54_RS09985	0.40	-1.2
2,191,478	+		LRK54_RS09985	0.40	+0.3
2,191,478	+		LRK54_RS09985	0.40	+0.4
2,191,479	-		LRK54_RS09985	0.40	+2.5
2,191,479	-		LRK54_RS09985	0.40	+0.1
2,191,500	-		LRK54_RS09985	0.44	-1.5
2,191,863	+				-1.2
2,191,863	+				-0.1
2,191,863	+				-1.3
2,191,863	+				+0.1
2,191,863	+				+1.1
2,191,863	+				+1.3
2,191,863	+				+0.9
2,191,863	+				-0.7
2,191,863	+				-0.9
2,191,863	+				+0.9
2,191,863	+				-0.5
2,191,863	+				+2.2
2,191,863	+				-0.7
2,191,863	+				+0.5
2,191,863	+				+0.4
2,191,863	+				-0.3
2,191,863	+				-0.7
2,191,863	+				+0.9
2,191,863	+				-0.3
2,191,863	+				+0.2
2,191,863	+				-1.0
2,191,863	+				-0.9
2,191,863	+				+1.6
2,191,863	+				+0.2
2,191,863	+				+0.5
2,191,863	+				-1.3
2,191,863	+				-1.0
2,191,863	+				-0.9
2,191,863	+				-0.0
2,191,863	+				-0.3
2,191,863	+				+0.1
2,191,863	+				+0.9
2,191,863	+				-0.5
2,191,863	+				-0.2
2,191,863	+				+1.3
2,191,863	+				-0.7
2,191,863	+				-0.3
2,191,863	+				-0.1
2,191,863	+				+0.1
2,191,863	+				-0.7
2,191,863	+				-0.0
2,191,863	+				+0.3
2,191,863	+				+0.1
2,191,863	+				+1.0
2,191,863	+				-0.3
2,191,864	-				+0.5
2,191,864	-				+0.2
2,191,864	-				-0.1
2,191,864	-				+1.3
2,191,864	-				-0.5
2,191,864	-				+0.9
2,191,864	-				+0.1
2,191,864	-				-0.1
2,191,864	-				+0.6
2,191,864	-				+0.1
2,191,864	-				-0.7
2,191,864	-				+0.5
2,191,864	-				-1.0
2,191,864	-				-0.5
2,191,864	-				+0.1
2,191,864	-				-0.3
2,191,864	-				-0.2
2,191,864	-				+0.6
2,191,864	-				-0.8
2,191,864	-				-1.0
2,191,864	-				-0.2
2,191,864	-				+1.1
2,191,864	-				-0.9
2,191,864	-				-0.3
2,191,864	-				-0.3
2,191,864	-				-1.1
2,191,864	-				-0.1
2,192,005	+		LRK54_RS09990	0.16	-0.2
2,192,006	-		LRK54_RS09990	0.16	+0.9
2,192,032	+		LRK54_RS09990	0.19	+0.1
2,192,032	+		LRK54_RS09990	0.19	+1.6
2,192,032	+		LRK54_RS09990	0.19	-0.7
2,192,032	+		LRK54_RS09990	0.19	+0.1
2,192,032	+		LRK54_RS09990	0.19	+1.7
2,192,032	+		LRK54_RS09990	0.19	-0.3
2,192,032	+		LRK54_RS09990	0.19	-0.6
2,192,033	-		LRK54_RS09990	0.19	-0.2
2,192,033	-		LRK54_RS09990	0.19	+0.5
2,192,033	-		LRK54_RS09990	0.19	-0.1
2,192,065	+		LRK54_RS09990	0.23	+0.7
2,192,065	+		LRK54_RS09990	0.23	-0.5
2,192,065	+		LRK54_RS09990	0.23	-0.5
2,192,065	+		LRK54_RS09990	0.23	-0.0
2,192,065	+		LRK54_RS09990	0.23	+0.5
2,192,065	+		LRK54_RS09990	0.23	+1.0
2,192,065	+		LRK54_RS09990	0.23	-0.4
2,192,065	+		LRK54_RS09990	0.23	+0.6
2,192,066	-		LRK54_RS09990	0.23	-0.3
2,192,066	-		LRK54_RS09990	0.23	+1.5
2,192,066	-		LRK54_RS09990	0.23	+0.8
2,192,066	-		LRK54_RS09990	0.23	+0.9
2,192,066	-		LRK54_RS09990	0.23	+0.0
2,192,066	-		LRK54_RS09990	0.23	+0.5
2,192,119	+		LRK54_RS09990	0.29	-1.6
2,192,119	+		LRK54_RS09990	0.29	-2.6
2,192,119	+		LRK54_RS09990	0.29	+0.0
2,192,119	+		LRK54_RS09990	0.29	-0.9
2,192,119	+		LRK54_RS09990	0.29	-0.4
2,192,119	+		LRK54_RS09990	0.29	+0.4
2,192,119	+		LRK54_RS09990	0.29	+0.0
2,192,119	+		LRK54_RS09990	0.29	+1.1
2,192,119	+		LRK54_RS09990	0.29	-0.1
2,192,119	+		LRK54_RS09990	0.29	-0.1
2,192,119	+		LRK54_RS09990	0.29	-0.7
2,192,119	+		LRK54_RS09990	0.29	-0.3
2,192,119	+		LRK54_RS09990	0.29	+0.3
2,192,119	+		LRK54_RS09990	0.29	-0.1
2,192,119	+		LRK54_RS09990	0.29	-0.1
2,192,119	+		LRK54_RS09990	0.29	-0.0
2,192,119	+		LRK54_RS09990	0.29	-0.7
2,192,119	+		LRK54_RS09990	0.29	-0.2
2,192,120	-		LRK54_RS09990	0.29	-0.3
2,192,120	-		LRK54_RS09990	0.29	+0.1
2,192,120	-		LRK54_RS09990	0.29	-0.2
2,192,120	-		LRK54_RS09990	0.29	-1.2
2,192,120	-		LRK54_RS09990	0.29	-0.4
2,192,120	-		LRK54_RS09990	0.29	+0.4
2,192,120	-		LRK54_RS09990	0.29	+0.5
2,192,120	-		LRK54_RS09990	0.29	+1.9
2,192,120	-		LRK54_RS09990	0.29	-0.2
2,192,120	-		LRK54_RS09990	0.29	-0.0
2,192,120	-		LRK54_RS09990	0.29	-1.2
2,192,120	-		LRK54_RS09990	0.29	+0.2
2,192,120	-		LRK54_RS09990	0.29	-0.3
2,192,120	-		LRK54_RS09990	0.29	+0.2
2,192,120	-		LRK54_RS09990	0.29	+0.7
2,192,120	-		LRK54_RS09990	0.29	+1.3
2,192,120	-		LRK54_RS09990	0.29	+0.7
2,192,120	-		LRK54_RS09990	0.29	-0.7
2,192,120	-		LRK54_RS09990	0.29	-0.8
2,192,120	-		LRK54_RS09990	0.29	-0.2
2,192,120	-		LRK54_RS09990	0.29	+0.1
2,192,120	-		LRK54_RS09990	0.29	-1.6
2,192,120	-		LRK54_RS09990	0.29	+0.2
2,192,120	-		LRK54_RS09990	0.29	+0.8
2,192,120	-		LRK54_RS09990	0.29	+0.1
2,192,120	-		LRK54_RS09990	0.29	+1.2
2,192,120	-		LRK54_RS09990	0.29	+0.1
2,192,120	-		LRK54_RS09990	0.29	-1.1
2,192,120	-		LRK54_RS09990	0.29	-2.6
2,192,131	+		LRK54_RS09990	0.30	-0.1
2,192,131	+		LRK54_RS09990	0.30	-0.3
2,192,131	+		LRK54_RS09990	0.30	-0.8
2,192,131	+		LRK54_RS09990	0.30	+0.0
2,192,131	+		LRK54_RS09990	0.30	+0.5
2,192,131	+		LRK54_RS09990	0.30	+1.0
2,192,131	+		LRK54_RS09990	0.30	+0.1
2,192,131	+		LRK54_RS09990	0.30	-0.3
2,192,131	+		LRK54_RS09990	0.30	+1.1
2,192,132	-		LRK54_RS09990	0.30	+1.7
2,192,132	-		LRK54_RS09990	0.30	-0.2
2,192,132	-		LRK54_RS09990	0.30	-0.2
2,192,132	-		LRK54_RS09990	0.30	+1.0
2,192,132	-		LRK54_RS09990	0.30	-0.0