Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08680

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
1,889,896	-				-1.4
1,889,896	-				-0.8
1,889,896	-				-0.1
1,889,917	+				-1.0
1,889,917	+				+0.1
1,889,917	+				-0.6
1,889,917	+				-0.9
1,889,917	+				-0.3
1,889,917	+				+1.0
1,889,917	+				-0.3
1,889,917	+				-0.3
1,889,917	+				+0.9
1,889,918	-				+0.2
1,889,918	-				-1.6
1,889,918	-				-0.3
1,889,918	-				-0.0
1,889,918	-				-0.1
1,889,918	-				-0.1
1,889,918	-				+0.4
1,889,918	-				-1.5
1,889,918	-				-0.2
1,889,918	-				+0.4
1,889,918	-				-0.0
1,889,918	-				-0.6
1,889,918	-				+0.0
1,889,918	-				-0.7
1,889,918	-				-0.1
1,889,918	-				-0.5
1,889,918	-				-1.6
1,889,918	-				-0.2
1,889,928	+				-0.7
1,889,928	+				-0.4
1,889,928	+				-0.3
1,889,928	+				-0.4
1,889,928	+				-1.0
1,889,928	+				-2.1
1,889,928	+				-0.6
1,889,928	+				+0.1
1,889,928	+				-1.1
1,889,928	+				+0.2
1,889,928	+				-0.7
1,889,928	+				+0.2
1,889,928	+				-0.6
1,889,928	+				+0.1
1,889,929	-				-0.7
1,889,929	-				+0.2
1,889,929	-				-1.1
1,889,929	-				+1.1
1,889,929	-				-1.6
1,889,929	-				-0.3
1,889,929	-				-0.1
1,889,929	-				-0.5
1,889,929	-				+0.8
1,889,929	-				+0.1
1,890,032	+				-0.0
1,890,032	+				-0.0
1,890,032	+				+1.0
1,890,032	+				+0.5
1,890,032	+				+0.2
1,890,032	+				+1.0
1,890,032	+				-0.0
1,890,032	+				+0.4
1,890,032	+				+0.1
1,890,032	+				-0.8
1,890,033	-				-0.2
1,890,033	-				+0.2
1,890,033	-				-0.2
1,890,138	+				+0.5
1,890,138	+				+1.5
1,890,138	+				-1.0
1,890,138	+				-0.9
1,890,138	+				+1.2
1,890,138	+				+0.2
1,890,138	+				+1.2
1,890,138	+				+0.1
1,890,138	+				+0.8
1,890,138	+				-0.4
1,890,139	-				-0.5
1,890,139	-				+0.8
1,890,139	-				-0.2
1,890,139	-				+1.5
1,890,194	+				-0.3
1,890,194	+				-0.4
1,890,194	+				+0.2
1,890,194	+				+0.1
1,890,194	+				+1.0
1,890,194	+				-0.7
1,890,194	+				-0.9
1,890,194	+				-1.8
1,890,194	+				+1.0
1,890,194	+				+0.1
1,890,194	+				-0.2
1,890,194	+				-0.4
1,890,195	-				-0.6
1,890,195	-				-0.5
1,890,195	-				+0.7
1,890,195	-				+0.3
1,890,195	-				-2.0
1,890,195	-				-0.6
1,890,195	-				-0.5
1,890,205	+				+0.5
1,890,214	+				+0.5
1,890,214	+				+0.6
1,890,214	+				-0.0
1,890,214	+				+0.1
1,890,214	+				+0.1
1,890,214	+				-0.6
1,890,214	+				-3.1
1,890,214	+				-0.3
1,890,214	+				+0.1
1,890,215	-				-0.5
1,890,215	-				+0.1
1,890,215	-				+0.4
1,890,215	-				+0.2
1,890,237	+				+0.2
1,890,237	+				-0.1
1,890,237	+				-1.5
1,890,237	+				-0.3
1,890,237	+				+1.0
1,890,237	+				+0.1
1,890,238	-				-0.5
1,890,238	-				-0.6
1,890,238	-				-0.4
1,890,238	-				-0.3
1,890,238	-				-1.4
1,890,238	-				-1.2
1,890,238	-				-0.0
1,890,238	-				+0.1
1,890,238	-				+0.3
1,890,238	-				-0.1
1,890,338	+		LRK54_RS08675	0.19	-1.0
1,890,338	+		LRK54_RS08675	0.19	+0.5
1,890,338	+		LRK54_RS08675	0.19	+0.5
1,890,338	+		LRK54_RS08675	0.19	-1.7
1,890,338	+		LRK54_RS08675	0.19	+0.3
1,890,338	+		LRK54_RS08675	0.19	-0.5
1,890,338	+		LRK54_RS08675	0.19	+1.5
1,890,338	+		LRK54_RS08675	0.19	+1.0
1,890,338	+		LRK54_RS08675	0.19	+0.4
1,890,338	+		LRK54_RS08675	0.19	-1.3
1,890,338	+		LRK54_RS08675	0.19	-0.4
1,890,338	+		LRK54_RS08675	0.19	-0.5
1,890,338	+		LRK54_RS08675	0.19	+0.0
1,890,338	+		LRK54_RS08675	0.19	+0.2
1,890,338	+		LRK54_RS08675	0.19	-1.3
1,890,338	+		LRK54_RS08675	0.19	-1.3
1,890,338	+		LRK54_RS08675	0.19	+0.4
1,890,338	+		LRK54_RS08675	0.19	+0.5
1,890,338	+		LRK54_RS08675	0.19	-0.2
1,890,338	+		LRK54_RS08675	0.19	-0.8
1,890,338	+		LRK54_RS08675	0.19	-0.0
1,890,339	-		LRK54_RS08675	0.19	+0.0
1,890,339	-		LRK54_RS08675	0.19	-1.0
1,890,339	-		LRK54_RS08675	0.19	-0.0
1,890,339	-		LRK54_RS08675	0.19	+0.2
1,890,339	-		LRK54_RS08675	0.19	-0.1
1,890,339	-		LRK54_RS08675	0.19	-0.9
1,890,339	-		LRK54_RS08675	0.19	-0.4
1,890,339	-		LRK54_RS08675	0.19	+0.6
1,890,339	-		LRK54_RS08675	0.19	-0.5
1,890,339	-		LRK54_RS08675	0.19	-1.2
1,890,347	+		LRK54_RS08675	0.21	+0.1
1,890,347	+		LRK54_RS08675	0.21	+1.4
1,890,347	+		LRK54_RS08675	0.21	-0.2
1,890,347	+		LRK54_RS08675	0.21	+1.0
1,890,347	+		LRK54_RS08675	0.21	-0.2
1,890,347	+		LRK54_RS08675	0.21	-1.4
1,890,348	+		LRK54_RS08675	0.21	+1.5
1,890,348	-		LRK54_RS08675	0.21	-1.9
1,890,348	-		LRK54_RS08675	0.21	-0.4
1,890,500	+		LRK54_RS08675	0.55	+1.0
1,890,500	+		LRK54_RS08675	0.55	-0.6
1,890,500	+		LRK54_RS08675	0.55	-1.4
1,890,500	+		LRK54_RS08675	0.55	+0.1
1,890,500	+		LRK54_RS08675	0.55	-0.1
1,890,500	+		LRK54_RS08675	0.55	+0.4
1,890,500	+		LRK54_RS08675	0.55	+0.0
1,890,500	+		LRK54_RS08675	0.55	+0.4
1,890,500	+		LRK54_RS08675	0.55	-0.2
1,890,500	+		LRK54_RS08675	0.55	+0.8
1,890,500	+		LRK54_RS08675	0.55	-0.7
1,890,500	+		LRK54_RS08675	0.55	+1.3
1,890,500	+		LRK54_RS08675	0.55	-0.8
1,890,500	+		LRK54_RS08675	0.55	-1.2
1,890,500	+		LRK54_RS08675	0.55	-0.5
1,890,500	+		LRK54_RS08675	0.55	-0.1
1,890,500	+		LRK54_RS08675	0.55	+0.5
1,890,501	-		LRK54_RS08675	0.55	+0.0
1,890,501	-		LRK54_RS08675	0.55	-0.1
1,890,501	-		LRK54_RS08675	0.55	+0.7
1,890,501	-		LRK54_RS08675	0.55	+0.4
1,890,501	-		LRK54_RS08675	0.55	+0.3
1,890,501	-		LRK54_RS08675	0.55	+1.0
1,890,501	-		LRK54_RS08675	0.55	+1.1
1,890,501	-		LRK54_RS08675	0.55	+0.4
1,890,501	-		LRK54_RS08675	0.55	-0.2
1,890,501	-		LRK54_RS08675	0.55	-0.0
1,890,501	-		LRK54_RS08675	0.55	-0.8
1,890,501	-		LRK54_RS08675	0.55	-1.1
1,890,501	-		LRK54_RS08675	0.55	-0.1
1,890,501	-		LRK54_RS08675	0.55	+0.4
1,890,501	-		LRK54_RS08675	0.55	+0.0
1,890,501	-		LRK54_RS08675	0.55	-0.8
1,890,501	-		LRK54_RS08675	0.55	-0.2
1,890,501	-		LRK54_RS08675	0.55	-1.4
1,890,501	-		LRK54_RS08675	0.55	-1.3
1,890,501	-		LRK54_RS08675	0.55	-0.5
1,890,822	+				+1.5
1,890,822	+				-2.4
1,890,822	+				+0.4
1,890,823	-				-0.7
1,890,823	-				-0.0
1,890,823	-				-0.3
1,890,823	-				+1.8
1,890,823	-				+1.2
1,890,823	-				+1.1
1,890,823	-				-0.4
1,890,823	-				+0.3
1,890,823	-				-0.3
1,890,823	-				-0.2
1,890,823	-				+1.0
1,890,823	-				+0.5
1,890,950	+		LRK54_RS08680	0.15	+0.4
1,890,950	+		LRK54_RS08680	0.15	+0.7
1,890,950	+		LRK54_RS08680	0.15	+0.5
1,890,951	-		LRK54_RS08680	0.15	+0.2
1,890,983	+		LRK54_RS08680	0.20	+2.9
1,890,983	+		LRK54_RS08680	0.20	+0.3
1,890,983	+		LRK54_RS08680	0.20	-0.3
1,890,983	+		LRK54_RS08680	0.20	+0.4
1,890,983	+		LRK54_RS08680	0.20	+0.3
1,890,983	+		LRK54_RS08680	0.20	-0.7
1,890,983	+		LRK54_RS08680	0.20	+0.6
1,890,983	+		LRK54_RS08680	0.20	+0.7
1,890,983	+		LRK54_RS08680	0.20	+0.6
1,890,983	+		LRK54_RS08680	0.20	+0.4
1,890,983	+		LRK54_RS08680	0.20	+0.2
1,890,983	+		LRK54_RS08680	0.20	+1.1
1,890,983	+		LRK54_RS08680	0.20	+2.4
1,890,983	+		LRK54_RS08680	0.20	-1.2
1,890,983	+		LRK54_RS08680	0.20	+0.2
1,890,983	+		LRK54_RS08680	0.20	-0.2
1,890,983	+		LRK54_RS08680	0.20	+0.3
1,890,984	-		LRK54_RS08680	0.21	-0.0
1,890,984	-		LRK54_RS08680	0.21	-1.5
1,890,984	-		LRK54_RS08680	0.21	+0.6
1,890,984	-		LRK54_RS08680	0.21	-0.2
1,890,984	-		LRK54_RS08680	0.21	+0.9
1,890,984	-		LRK54_RS08680	0.21	+0.3
1,890,984	-		LRK54_RS08680	0.21	+0.1
1,890,984	-		LRK54_RS08680	0.21	+1.5
1,890,984	-		LRK54_RS08680	0.21	-0.5
1,890,984	-		LRK54_RS08680	0.21	-0.1
1,890,984	-		LRK54_RS08680	0.21	+0.5
1,890,984	-		LRK54_RS08680	0.21	+0.3
1,890,984	-		LRK54_RS08680	0.21	+0.6
1,890,984	-		LRK54_RS08680	0.21	+1.5
1,890,984	-		LRK54_RS08680	0.21	-0.0
1,890,984	-		LRK54_RS08680	0.21	+0.6
1,890,984	-		LRK54_RS08680	0.21	+1.0
1,890,984	-		LRK54_RS08680	0.21	+1.0
1,890,984	-		LRK54_RS08680	0.21	+0.9
1,891,058	+		LRK54_RS08680	0.32	+0.6
1,891,058	+		LRK54_RS08680	0.32	-1.9
1,891,058	+		LRK54_RS08680	0.32	-1.0
1,891,058	+		LRK54_RS08680	0.32	+0.6
1,891,058	+		LRK54_RS08680	0.32	+0.9
1,891,058	+		LRK54_RS08680	0.32	+0.4
1,891,058	+		LRK54_RS08680	0.32	+0.3
1,891,058	+		LRK54_RS08680	0.32	+0.1
1,891,058	+		LRK54_RS08680	0.32	-0.2
1,891,058	+		LRK54_RS08680	0.32	+0.6
1,891,058	+		LRK54_RS08680	0.32	-0.4
1,891,058	+		LRK54_RS08680	0.32	+0.3
1,891,058	+		LRK54_RS08680	0.32	+0.6
1,891,058	+		LRK54_RS08680	0.32	-0.1
1,891,058	+		LRK54_RS08680	0.32	+1.0
1,891,058	+		LRK54_RS08680	0.32	-0.1
1,891,059	-		LRK54_RS08680	0.33	+1.2
1,891,059	-		LRK54_RS08680	0.33	+0.2
1,891,059	-		LRK54_RS08680	0.33	+0.3
1,891,059	-		LRK54_RS08680	0.33	+0.3
1,891,059	-		LRK54_RS08680	0.33	+1.1
1,891,059	-		LRK54_RS08680	0.33	-1.2
1,891,059	-		LRK54_RS08680	0.33	+0.5
1,891,059	-		LRK54_RS08680	0.33	-0.1
1,891,059	-		LRK54_RS08680	0.33	+0.7
1,891,059	-		LRK54_RS08680	0.33	+1.0
1,891,059	-		LRK54_RS08680	0.33	-1.8
1,891,059	-		LRK54_RS08680	0.33	+1.2
1,891,059	-		LRK54_RS08680	0.33	+0.1
1,891,059	-		LRK54_RS08680	0.33	+0.1
1,891,059	-		LRK54_RS08680	0.33	+1.8
1,891,059	-		LRK54_RS08680	0.33	-0.2
1,891,059	-		LRK54_RS08680	0.33	-1.0
1,891,059	-		LRK54_RS08680	0.33	+0.2
1,891,059	-		LRK54_RS08680	0.33	+0.5
1,891,501	+				-1.2
1,891,501	+				-0.4
1,891,501	+				-0.5
1,891,501	+				+0.1
1,891,501	+				+0.3
1,891,501	+				-0.2
1,891,501	+				+0.5
1,891,501	+				+1.1
1,891,501	+				-0.3
1,891,501	+				-0.0
1,891,501	+				-1.8
1,891,501	+				-0.3
1,891,501	+				+1.8
1,891,502	-				-0.2
1,891,502	-				+0.1
1,891,502	-				+1.2
1,891,502	-				+0.2
1,891,502	-				+0.1
1,891,549	+				-1.0
1,891,549	+				-1.5
1,891,549	+				-0.9
1,891,549	+				-1.4
1,891,549	+				+0.2
1,891,549	+				-0.5
1,891,549	+				+2.0
1,891,549	+				+0.7
1,891,549	+				-0.5
1,891,549	+				-1.3
1,891,549	+				-0.6
1,891,549	+				+0.4
1,891,550	-				-0.7
1,891,550	-				-0.3
1,891,550	-				-0.0
1,891,550	-				+0.2
1,891,603	+				-1.0
1,891,603	+				+1.0
1,891,603	+				-0.4
1,891,603	+				-0.8
1,891,603	+				-0.3
1,891,603	+				-1.5
1,891,603	+				+0.0
1,891,603	+				+1.1
1,891,603	+				+0.0
1,891,603	+				+0.7
1,891,603	+				+0.6
1,891,603	+				+0.3
1,891,603	+				+0.3
1,891,603	+				-0.7
1,891,603	+				-0.5
1,891,603	+				-0.4
1,891,603	+				+0.3
1,891,603	+				+0.2
1,891,604	-				+0.4
1,891,604	-				-1.1
1,891,604	-				-0.3
1,891,604	-				+0.1
1,891,604	-				+0.4
1,891,604	-				-0.3
1,891,604	-				-0.6
1,891,604	-				+1.5
1,891,604	-				+0.1
1,891,604	-				-0.5
1,891,604	-				+1.2
1,891,604	-				-1.4
1,891,666	+		LRK54_RS08685	0.12	+0.3
1,891,666	+		LRK54_RS08685	0.12	+0.8
1,891,666	+		LRK54_RS08685	0.12	+0.4
1,891,666	+		LRK54_RS08685	0.12	+0.5
1,891,666	+		LRK54_RS08685	0.12	-0.1
1,891,666	+		LRK54_RS08685	0.12	+0.5
1,891,666	+		LRK54_RS08685	0.12	-1.8
1,891,666	+		LRK54_RS08685	0.12	-1.4
1,891,666	+		LRK54_RS08685	0.12	+0.5
1,891,666	+		LRK54_RS08685	0.12	+0.4
1,891,666	+		LRK54_RS08685	0.12	+1.5
1,891,666	+		LRK54_RS08685	0.12	+0.1
1,891,666	+		LRK54_RS08685	0.12	-2.4
1,891,666	+		LRK54_RS08685	0.12	-0.3
1,891,666	+		LRK54_RS08685	0.12	-2.5
1,891,666	+		LRK54_RS08685	0.12	-0.5
1,891,667	-		LRK54_RS08685	0.12	-1.8
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