Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08575

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
1,868,239	+		LRK54_RS08570	0.15	-1.0
1,868,239	+		LRK54_RS08570	0.15	-0.5
1,868,239	+		LRK54_RS08570	0.15	+0.3
1,868,239	+		LRK54_RS08570	0.15	+1.4
1,868,239	+		LRK54_RS08570	0.15	-0.1
1,868,239	+		LRK54_RS08570	0.15	-3.1
1,868,239	+		LRK54_RS08570	0.15	-0.7
1,868,239	+		LRK54_RS08570	0.15	-0.8
1,868,239	+		LRK54_RS08570	0.15	+0.1
1,868,239	+		LRK54_RS08570	0.15	-0.6
1,868,239	+		LRK54_RS08570	0.15	+0.0
1,868,239	+		LRK54_RS08570	0.15	+0.2
1,868,239	+		LRK54_RS08570	0.15	+0.1
1,868,239	+		LRK54_RS08570	0.15	+0.3
1,868,239	+		LRK54_RS08570	0.15	-2.3
1,868,239	+		LRK54_RS08570	0.15	-0.5
1,868,239	+		LRK54_RS08570	0.15	+0.1
1,868,239	+		LRK54_RS08570	0.15	+0.7
1,868,239	+		LRK54_RS08570	0.15	+0.5
1,868,239	+		LRK54_RS08570	0.15	-0.1
1,868,239	+		LRK54_RS08570	0.15	-1.1
1,868,239	+		LRK54_RS08570	0.15	+0.3
1,868,239	+		LRK54_RS08570	0.15	-0.4
1,868,239	+		LRK54_RS08570	0.15	+0.8
1,868,239	+		LRK54_RS08570	0.15	+0.6
1,868,239	+		LRK54_RS08570	0.15	-1.1
1,868,239	+		LRK54_RS08570	0.15	+0.2
1,868,239	+		LRK54_RS08570	0.15	+0.2
1,868,239	+		LRK54_RS08570	0.15	-1.7
1,868,239	+		LRK54_RS08570	0.15	-0.1
1,868,239	+		LRK54_RS08570	0.15	+0.1
1,868,239	+		LRK54_RS08570	0.15	+0.4
1,868,239	+		LRK54_RS08570	0.15	+0.5
1,868,239	+		LRK54_RS08570	0.15	+0.4
1,868,239	+		LRK54_RS08570	0.15	+0.3
1,868,239	+		LRK54_RS08570	0.15	+0.1
1,868,239	+		LRK54_RS08570	0.15	+0.2
1,868,239	+		LRK54_RS08570	0.15	-0.6
1,868,239	+		LRK54_RS08570	0.15	+0.5
1,868,239	+		LRK54_RS08570	0.15	+0.0
1,868,240	-		LRK54_RS08570	0.15	-1.3
1,868,240	-		LRK54_RS08570	0.15	-0.3
1,868,240	-		LRK54_RS08570	0.15	-0.1
1,868,240	-		LRK54_RS08570	0.15	-0.3
1,868,240	-		LRK54_RS08570	0.15	+0.6
1,868,240	-				+1.5
1,868,240	-		LRK54_RS08570	0.15	+0.2
1,868,240	-		LRK54_RS08570	0.15	-0.5
1,868,240	-		LRK54_RS08570	0.15	-0.6
1,868,240	-		LRK54_RS08570	0.15	+1.7
1,868,240	-		LRK54_RS08570	0.15	+0.1
1,868,240	-		LRK54_RS08570	0.15	-0.3
1,868,240	-		LRK54_RS08570	0.15	-0.4
1,868,240	-		LRK54_RS08570	0.15	-0.1
1,868,240	-		LRK54_RS08570	0.15	-0.4
1,868,240	-		LRK54_RS08570	0.15	+1.1
1,868,240	-		LRK54_RS08570	0.15	+1.0
1,868,240	-		LRK54_RS08570	0.15	+0.7
1,868,240	-		LRK54_RS08570	0.15	-0.6
1,868,240	-		LRK54_RS08570	0.15	+2.5
1,868,240	-		LRK54_RS08570	0.15	-0.7
1,868,240	-		LRK54_RS08570	0.15	-0.1
1,868,240	-		LRK54_RS08570	0.15	-0.7
1,868,240	-		LRK54_RS08570	0.15	+0.5
1,868,240	-		LRK54_RS08570	0.15	+3.5
1,868,240	-		LRK54_RS08570	0.15	+0.4
1,868,240	-		LRK54_RS08570	0.15	-0.3
1,868,240	-		LRK54_RS08570	0.15	+0.4
1,868,240	-		LRK54_RS08570	0.15	+0.2
1,868,240	-		LRK54_RS08570	0.15	-0.8
1,868,240	-		LRK54_RS08570	0.15	-1.2
1,868,240	-		LRK54_RS08570	0.15	-0.0
1,868,240	-		LRK54_RS08570	0.15	+0.1
1,868,240	-		LRK54_RS08570	0.15	-0.4
1,868,240	-		LRK54_RS08570	0.15	+1.1
1,868,240	-		LRK54_RS08570	0.15	+2.5
1,868,240	-		LRK54_RS08570	0.15	+0.9
1,868,240	-		LRK54_RS08570	0.15	-0.6
1,868,240	-		LRK54_RS08570	0.15	-0.4
1,868,240	-		LRK54_RS08570	0.15	-1.9
1,868,240	-		LRK54_RS08570	0.15	-0.2
1,868,240	-		LRK54_RS08570	0.15	-1.3
1,868,240	-		LRK54_RS08570	0.15	+1.8
1,868,240	-		LRK54_RS08570	0.15	+0.7
1,868,240	-		LRK54_RS08570	0.15	+0.2
1,868,240	-		LRK54_RS08570	0.15	+1.0
1,868,240	-		LRK54_RS08570	0.15	-0.9
1,868,240	-		LRK54_RS08570	0.15	+0.2
1,868,240	-		LRK54_RS08570	0.15	+0.8
1,868,578	+		LRK54_RS08570	0.48	+0.2
1,868,578	+		LRK54_RS08570	0.48	+0.7
1,868,579	-		LRK54_RS08570	0.48	-0.3
1,868,629	+		LRK54_RS08570	0.53	+0.8
1,868,629	+		LRK54_RS08570	0.53	-2.0
1,868,971	+		LRK54_RS08570	0.87	+0.8
1,868,971	+		LRK54_RS08570	0.87	+0.8
1,868,971	+		LRK54_RS08570	0.87	+1.9
1,868,971	+		LRK54_RS08570	0.87	-0.6
1,868,971	+		LRK54_RS08570	0.87	+1.4
1,868,972	-		LRK54_RS08570	0.87	+0.1
1,868,972	-		LRK54_RS08570	0.87	+0.9
1,868,972	-		LRK54_RS08570	0.87	+1.5
1,868,972	-		LRK54_RS08570	0.87	+0.4
1,868,972	-		LRK54_RS08570	0.87	-0.0
1,869,058	+				+0.5
1,869,058	+				+0.1
1,869,058	+				+0.0
1,869,058	+				+0.4
1,869,059	-				+0.0
1,869,059	-				-1.2
1,869,059	-				-0.6
1,869,092	+				-1.3
1,869,093	-				+0.3
1,869,099	+				+2.5
1,869,099	+				-0.1
1,869,099	+				+0.4
1,869,099	+				+0.5
1,869,099	+				+0.4
1,869,100	-				-0.3
1,869,100	-				-0.5
1,869,100	-				-0.5
1,869,100	-				+1.1
1,869,339	+		LRK54_RS08575	0.23	+0.7
1,869,339	+		LRK54_RS08575	0.23	-0.4
1,869,339	+		LRK54_RS08575	0.23	+0.8
1,869,339	+		LRK54_RS08575	0.23	-1.3
1,869,340	-		LRK54_RS08575	0.23	-0.3
1,869,340	-		LRK54_RS08575	0.23	+0.5
1,869,340	-		LRK54_RS08575	0.23	+1.3
1,869,340	-		LRK54_RS08575	0.23	+0.2
1,869,340	-		LRK54_RS08575	0.23	+0.3
1,869,340	-		LRK54_RS08575	0.23	-0.3
1,869,340	-		LRK54_RS08575	0.23	-0.3
1,869,340	-		LRK54_RS08575	0.23	+0.0
1,869,340	-		LRK54_RS08575	0.23	-0.1
1,869,340	-		LRK54_RS08575	0.23	+0.8
1,869,340	-		LRK54_RS08575	0.23	-0.3
1,869,340	-		LRK54_RS08575	0.23	-0.6
1,869,489	+		LRK54_RS08575	0.38	+0.1
1,869,489	+		LRK54_RS08575	0.38	+0.3
1,869,489	+		LRK54_RS08575	0.38	+0.0
1,869,490	-		LRK54_RS08575	0.39	-0.1
1,869,490	-		LRK54_RS08575	0.39	+0.6
1,869,490	-		LRK54_RS08575	0.39	+0.9
1,869,490	-		LRK54_RS08575	0.39	+1.3
1,870,053	+				+1.0
1,870,053	+				+0.1
1,870,053	+				-1.3
1,870,053	+				+0.1
1,870,053	+				-1.2
1,870,053	+				-0.1
1,870,053	+				-0.6
1,870,053	+				+2.5
1,870,053	+				-0.8
1,870,053	+				-0.7
1,870,053	+				-0.0
1,870,053	+				-1.8
1,870,053	+				-0.9
1,870,053	+				+1.5
1,870,053	+				+0.1
1,870,053	+				-1.3
1,870,053	+				+0.1
1,870,053	+				+0.8
1,870,053	+				+0.7
1,870,054	-				+1.5
1,870,054	-				-0.3
1,870,054	-				-0.3
1,870,054	-				-0.3
1,870,054	-				+0.0
1,870,054	-				-0.1
1,870,054	-				+0.6
1,870,054	-				-0.2
1,870,054	-				+1.5
1,870,054	-				+0.9
1,870,054	-				+0.4
1,870,054	-				+0.4
1,870,054	-				-0.9
1,870,054	-				-0.6
1,870,054	-				-0.8
1,870,054	-				+0.3
1,870,054	-				-0.1
1,870,054	-				+0.4
1,870,291	+				-0.0
1,870,291	+				-0.5
1,870,291	+				+0.6
1,870,291	+				+0.3
1,870,291	+				+0.5
1,870,291	+				-1.4
1,870,291	+				-1.5
1,870,291	+				+0.6
1,870,291	+				+0.1
1,870,291	+				+0.2
1,870,291	+				-0.5
1,870,291	+				-0.1
1,870,291	+				+0.1
1,870,291	+				-0.6
1,870,291	+				-0.1
1,870,291	+				-0.1
1,870,291	+				-0.1
1,870,291	+				+0.9
1,870,291	+				+0.4
1,870,291	+				-0.2
1,870,291	+				-0.0
1,870,291	+				-1.4
1,870,291	+				+1.2
1,870,291	+				-0.3
1,870,291	+				-0.5
1,870,291	+				-1.6
1,870,291	+				+0.6
1,870,291	+				-1.1
1,870,291	+				+0.5
1,870,291	+				+0.3
1,870,291	+				-1.7
1,870,291	+				+0.2
1,870,291	+				-0.8
1,870,291	+				-0.1
1,870,291	+				-0.1
1,870,291	+				+0.3
1,870,291	+				-0.3
1,870,291	+				+0.3
1,870,291	+				+2.1
1,870,291	+				+0.2
1,870,291	+				-0.3
1,870,291	+				-0.9
1,870,291	+				+0.4
1,870,291	+				+0.1
1,870,291	+				-0.8
1,870,291	+				-1.6
1,870,291	+				-0.3
1,870,291	+				+0.2
1,870,291	+				+0.6
1,870,291	+				+1.5
1,870,291	+				-2.1
1,870,291	+				-0.3
1,870,291	+				-0.0
1,870,291	+				+0.6
1,870,291	+				+0.3
1,870,291	+				+1.0
1,870,291	+				+0.5
1,870,291	+				-0.9
1,870,291	+				-1.2
1,870,291	+				+2.1
1,870,291	+				-0.2
1,870,291	+				-0.0
1,870,291	+				-1.8
1,870,291	+				-0.5
1,870,291	+				+0.3
1,870,291	+				-0.4
1,870,291	+				-0.0
1,870,291	+				+0.0
1,870,291	+				-0.1
1,870,291	+				-0.3
1,870,291	+				-0.5
1,870,291	+				-0.6
1,870,291	+				+2.5
1,870,291	+				+0.8
1,870,291	+				-1.7
1,870,291	+				-0.5
1,870,291	+				-1.4
1,870,291	+				-0.4
1,870,291	+				-0.5
1,870,291	+				+0.5
1,870,291	+				+0.3
1,870,292	-				-0.8
1,870,292	-				+0.6
1,870,292	-				+1.4
1,870,292	-				-0.6
1,870,292	-				-0.6
1,870,292	-				+0.9
1,870,292	-				+0.0
1,870,292	-				-0.2
1,870,292	-				-0.1
1,870,292	-				+0.0
1,870,292	-				-0.1
1,870,292	-				-0.1
1,870,292	-				-0.3
1,870,292	-				+0.1
1,870,292	-				+0.6
1,870,292	-				-0.9
1,870,292	-				-0.5
1,870,292	-				-0.4
1,870,292	-				+0.0
1,870,292	-				-1.6
1,870,292	-				-0.2
1,870,292	-				-0.0
1,870,292	-				+0.4
1,870,292	-				-0.0
1,870,292	-				+0.3
1,870,292	-				-0.3
1,870,292	-				+1.0
1,870,292	-				-0.6
1,870,292	-				+0.4
1,870,292	-				-1.6
1,870,292	-				-0.5
1,870,292	-				+1.9
1,870,292	-				-0.5
1,870,292	-				-0.3
1,870,292	-				+0.1
1,870,292	-				-1.9
1,870,292	-				+0.0
1,870,292	-				-1.2
1,870,292	-				+0.1
1,870,292	-				+1.2
1,870,292	-				+0.5
1,870,292	-				-0.7
1,870,292	-				+0.2
1,870,292	-				+2.3
1,870,292	-				-0.5
1,870,292	-				-0.3
1,870,292	-				+1.5
1,870,292	-				-1.4
1,870,292	-				+0.2
1,870,292	-				+2.2
1,870,292	-				+0.1
1,870,292	-				-0.2
1,870,292	-				-1.3
1,870,292	-				+0.7
1,870,292	-				+0.8
1,870,292	-				+0.7
1,870,292	-				-0.5
1,870,292	-				+1.2
1,870,292	-				-0.2
1,870,292	-				+0.2
1,870,292	-				-0.1
1,870,292	-				+1.5
1,870,292	-				-0.3
1,870,292	-				-0.4
1,870,292	-				-0.1
1,870,292	-				-1.5
1,870,292	-				-0.0
1,870,292	-				-0.9
1,870,292	-				+0.9
1,870,292	-				-1.0
1,870,292	-				-0.8
1,870,292	-				-0.3
1,870,292	-				-0.9
1,870,292	-				+0.4
1,870,292	-				+1.1
1,870,292	-				+1.5
1,870,292	-				+0.5
1,870,427	-		LRK54_RS08580	0.17	+0.9
1,870,427	-		LRK54_RS08580	0.17	-0.1
1,870,427	-		LRK54_RS08580	0.17	-1.3
1,870,570	+		LRK54_RS08580	0.44	-1.1
1,870,570	+		LRK54_RS08580	0.44	-0.9
1,870,570	+		LRK54_RS08580	0.44	-0.1
1,870,653	+		LRK54_RS08580	0.60	-0.5
1,870,879	+				+0.9
1,870,879	+				-0.3
1,870,879	+				-0.3
1,870,879	+				-0.4
1,870,879	+				-0.1
1,870,879	+				-0.2
1,870,879	+				+0.4
1,870,879	+				-0.7
1,870,879	+				-2.3
1,870,879	+				-0.5
1,870,879	+				+0.8
1,870,879	+				-0.4
1,870,879	+				-0.8
1,870,879	+				+0.7
1,870,879	+				+1.3
1,870,879	+				+2.7
1,870,880	-				-2.1
1,870,880	-				+0.9
1,870,880	-				-0.2
1,871,043	+				+1.1