Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08385

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
1,826,571	+		LRK54_RS08380	0.35	-0.1
1,826,572	-		LRK54_RS08380	0.35	+0.8
1,826,586	+		LRK54_RS08380	0.36	+0.3
1,826,586	+		LRK54_RS08380	0.36	+0.5
1,826,586	+		LRK54_RS08380	0.36	-1.9
1,826,587	-		LRK54_RS08380	0.36	+0.7
1,826,696	+		LRK54_RS08380	0.44	+1.0
1,826,871	+		LRK54_RS08380	0.56	+0.5
1,826,871	+		LRK54_RS08380	0.56	+1.9
1,826,872	-		LRK54_RS08380	0.56	-0.1
1,826,872	-		LRK54_RS08380	0.56	-1.4
1,826,885	+		LRK54_RS08380	0.57	+2.5
1,826,886	-		LRK54_RS08380	0.57	-1.7
1,827,045	-		LRK54_RS08380	0.69	+1.7
1,827,237	-		LRK54_RS08380	0.83	-0.3
1,827,237	-		LRK54_RS08380	0.83	-1.3
1,827,257	+		LRK54_RS08380	0.84	+1.2
1,827,296	+		LRK54_RS08380	0.87	-0.4
1,827,519	+				+0.2
1,827,519	+				-0.4
1,827,519	+				-0.4
1,827,519	+				-0.7
1,827,519	+				+0.3
1,827,519	+				-0.1
1,827,520	-				+0.2
1,827,520	-				+0.8
1,827,525	+				-0.1
1,827,525	+				-0.7
1,827,525	+				-0.8
1,827,525	+				-0.5
1,827,525	+				-0.3
1,827,525	+				-0.6
1,827,525	+				+0.8
1,827,525	+				-0.8
1,827,525	+				-0.1
1,827,525	+				+0.5
1,827,525	+				+1.3
1,827,525	+				+0.8
1,827,525	+				-0.1
1,827,525	+				+1.5
1,827,525	+				+0.5
1,827,525	+				+0.5
1,827,525	+				-0.9
1,827,525	+				+0.1
1,827,525	+				+0.5
1,827,525	+				+0.3
1,827,525	+				+2.1
1,827,525	+				+0.5
1,827,525	+				-1.0
1,827,525	+				-0.6
1,827,526	-				-0.2
1,827,526	-				-0.2
1,827,526	-				-0.3
1,827,526	-				-0.1
1,827,526	-				-1.3
1,827,526	-				+0.1
1,827,526	-				-0.1
1,827,526	-				-1.0
1,827,526	-				-0.9
1,827,526	-				-0.5
1,827,526	-				+1.3
1,827,526	-				-0.8
1,827,526	-				+0.2
1,827,526	-				-1.4
1,827,526	-				-0.7
1,827,526	-				-2.3
1,827,526	-				-2.9
1,827,526	-				-0.4
1,827,533	+				+0.7
1,827,533	+				+0.5
1,827,533	+				-0.6
1,827,533	+				+0.2
1,827,533	+				-0.8
1,827,533	+				-0.5
1,827,534	-				-0.2
1,827,534	-				-0.0
1,827,534	-				+0.3
1,827,534	-				+1.7
1,827,534	-				-0.2
1,827,534	-				-2.6
1,827,534	-				-0.3
1,827,539	+				-0.4
1,827,539	+				-0.3
1,827,539	+				-0.1
1,827,539	+				-0.2
1,827,539	+				-0.0
1,827,539	+				+0.2
1,827,539	+				-0.1
1,827,539	+				+0.1
1,827,539	+				-0.8
1,827,539	+				-0.1
1,827,539	+				+0.3
1,827,540	-				+0.7
1,827,540	-				+0.3
1,827,540	-				+3.1
1,827,540	-				-0.6
1,827,540	-				+0.6
1,827,540	-				+0.3
1,827,540	-				-0.6
1,827,540	-				-1.8
1,827,540	-				+0.1
1,827,540	-				-1.2
1,827,540	-				+0.1
1,827,540	-				-1.7
1,827,540	-				-0.2
1,827,540	-				+0.1
1,827,561	+				-1.1
1,827,561	+				+0.5
1,827,562	-				-0.9
1,827,562	-				-0.5
1,827,592	+		LRK54_RS08385	0.12	+0.7
1,827,592	+		LRK54_RS08385	0.12	+0.1
1,827,593	-		LRK54_RS08385	0.13	+0.2
1,827,721	+		LRK54_RS08385	0.46	-0.3
1,827,721	+		LRK54_RS08385	0.46	+0.5
1,827,722	-		LRK54_RS08385	0.46	+0.3
1,827,978	+				+0.3
1,827,979	-				-0.6
1,827,979	-				+1.6
1,828,302	+				-0.3
1,828,302	+				-0.8
1,828,302	+				-0.4
1,828,302	+				+1.2
1,828,302	+				+0.5
1,828,302	+				+0.5
1,828,302	+				-0.2
1,828,302	+				+0.2
1,828,302	+				-1.0
1,828,302	+				+0.3
1,828,302	+				+1.5
1,828,302	+				+0.6
1,828,302	+				-1.9
1,828,302	+				-0.3
1,828,302	+				-0.9
1,828,303	-				+0.9
1,828,303	-				-0.1
1,828,303	-				-0.5
1,828,303	-				+0.1
1,828,303	-				-0.9
1,828,303	-				+0.1
1,828,303	-				-1.2
1,828,303	-				-0.4
1,828,303	-				+0.1
1,828,303	-				-1.5
1,828,303	-				-1.1
1,828,303	-				-0.1
1,828,303	-				-0.9
1,828,303	-				-0.1
1,828,303	-				-2.1
1,828,303	-				+0.2
1,828,303	-				+2.5
1,828,354	+				+1.3
1,828,354	+				-0.4
1,828,354	+				+0.2
1,828,354	+				-0.4
1,828,354	+				+1.8
1,828,354	+				-0.1
1,828,354	+				-2.2
1,828,354	+				-0.7
1,828,354	+				+0.3
1,828,354	+				-0.0
1,828,354	+				-0.3
1,828,354	+				+0.2
1,828,354	+				+0.1
1,828,354	+				+0.1
1,828,354	+				-0.1
1,828,355	-				-0.9
1,828,355	-				+1.5
1,828,355	-				+0.1
1,828,355	-				+1.5
1,828,355	-				+0.3
1,828,355	-				+0.4
1,828,355	-				+0.0
1,828,355	-				-0.6
1,828,355	-				+0.6
1,828,355	-				+0.6
1,828,355	-				+0.1
1,828,355	-				+0.4
1,828,355	-				-0.5
1,828,537	+		LRK54_RS08395	0.74	+0.5
1,828,537	+		LRK54_RS08395	0.74	+0.0
1,828,538	-		LRK54_RS08395	0.74	+0.4
1,828,538	-		LRK54_RS08395	0.74	-0.4
1,828,538	-		LRK54_RS08395	0.74	-0.3
1,828,538	-		LRK54_RS08395	0.74	-1.0
1,828,538	-		LRK54_RS08395	0.74	+0.5
1,828,538	-		LRK54_RS08395	0.74	-1.1
1,828,597	+				-0.5
1,828,598	-				+0.1
1,828,598	-				-0.8
1,828,682	+				-1.0
1,828,682	+				-0.8
1,828,682	+				+0.2
1,828,682	+				+0.6
1,828,682	+				+0.7
1,828,682	+				+0.1
1,828,682	+				+0.5
1,828,682	+				-0.3
1,828,683	-				+0.8
1,828,683	-				+0.2
1,828,683	-				-0.2
1,828,683	-				+0.7
1,828,721	+				-0.7
1,828,721	+				-1.4
1,828,721	+				-1.0
1,828,721	+				-1.7
1,828,722	-				-0.4
1,828,722	-				-2.2
1,828,722	-				+0.4
1,828,722	-				-0.3
1,828,722	-				-0.6
1,828,722	-				-0.7
1,828,775	+				+0.5
1,828,775	+				-0.9
1,828,775	+				-0.4
1,828,775	+				+1.5
1,828,775	+				-0.5
1,828,775	+				-1.0
1,828,775	+				-0.7
1,828,776	-				-0.8
1,828,776	-				-0.0
1,828,776	-				+0.4
1,828,776	-				-1.0
1,828,776	-				-0.4
1,828,776	-				-0.5
1,828,776	-				-0.5
1,828,776	-				-0.5
1,828,776	-				+0.2
1,828,776	-				-0.9
1,828,776	-				+1.1
1,828,776	-				-1.9
1,828,776	-				-0.7
1,828,776	-				-2.2
1,828,776	-				-1.5
1,828,776	-				+0.5
1,828,776	-				+0.5
1,828,790	+				+0.2
1,828,790	+				-1.1
1,828,790	+				-0.7
1,828,790	+				-0.5
1,828,790	+				-0.1
1,828,790	+				-0.8
1,828,790	+				-0.2
1,828,790	+				+2.2
1,828,790	+				-1.1
1,828,790	+				-0.8
1,828,790	+				-1.0
1,828,790	+				-0.5
1,828,790	+				-0.9
1,828,790	+				+0.6
1,828,790	+				-0.3
1,828,790	+				+0.6
1,828,790	+				-0.3
1,828,790	+				+0.4
1,828,790	+				+1.2
1,828,790	+				+0.0
1,828,790	+				+1.3
1,828,791	-				-0.9
1,828,791	-				-0.5
1,828,791	-				-1.4
1,828,791	-				+0.2
1,828,791	-				+0.2
1,828,791	-				+0.5
1,828,791	-				+0.0
1,828,791	-				+0.2
1,828,791	-				-0.2
1,828,791	-				-0.1
1,828,791	-				+0.6
1,828,791	-				-0.7
1,828,791	-				-0.5
1,828,791	-				+0.7
1,828,791	-				-0.7
1,828,791	-				+0.1
1,828,791	-				-0.4
1,828,791	-				+0.9
1,828,791	-				-0.3
1,828,791	-				-0.7
1,828,791	-				-0.4
1,828,791	-				-0.3
1,828,791	-				+0.3
1,828,791	-				-0.7
1,828,793	+				-0.1
1,828,793	+				-1.4
1,828,793	+				+0.2
1,828,793	+				-0.7
1,828,793	+				+0.1
1,828,793	+				+0.6
1,828,794	-				-1.9
1,828,794	-				+0.4
1,828,794	-				-0.1
1,828,794	-				-0.3
1,828,794	-				-0.3
1,828,794	-				-1.6
1,828,814	+				+1.8
1,828,814	+				+1.4
1,828,814	+				+0.0
1,828,814	+				+1.9
1,828,814	+				-0.5
1,828,815	-				+0.5
1,828,815	-				+0.6
1,828,815	-				-0.9
1,828,815	-				+0.6
1,828,815	-				-0.2
1,828,815	-				+0.4