Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08250

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
1,799,845	+		LRK54_RS08240	0.22	-1.1
1,799,845	+		LRK54_RS08240	0.22	-1.1
1,799,845	+		LRK54_RS08240	0.22	+2.2
1,799,845	+		LRK54_RS08240	0.22	+0.3
1,799,845	+		LRK54_RS08240	0.22	-0.4
1,799,845	+		LRK54_RS08240	0.22	-2.1
1,799,845	+		LRK54_RS08240	0.22	-1.4
1,799,845	+		LRK54_RS08240	0.22	-2.5
1,799,845	+		LRK54_RS08240	0.22	-0.1
1,799,845	+		LRK54_RS08240	0.22	-0.8
1,799,846	-		LRK54_RS08240	0.22	-0.9
1,799,846	-		LRK54_RS08240	0.22	+0.5
1,799,846	-		LRK54_RS08240	0.22	-0.0
1,799,846	-		LRK54_RS08240	0.22	+1.2
1,799,846	-		LRK54_RS08240	0.22	-0.5
1,799,853	+		LRK54_RS08240	0.24	-1.6
1,799,853	+		LRK54_RS08240	0.24	-0.2
1,799,853	+		LRK54_RS08240	0.24	-0.8
1,799,853	+		LRK54_RS08240	0.24	-1.3
1,799,854	-		LRK54_RS08240	0.24	-0.6
1,799,854	-		LRK54_RS08240	0.24	+0.7
1,799,854	-		LRK54_RS08240	0.24	+0.3
1,799,854	-		LRK54_RS08240	0.24	+0.8
1,799,854	-		LRK54_RS08240	0.24	+0.4
1,799,854	-		LRK54_RS08240	0.24	+1.3
1,799,854	-		LRK54_RS08240	0.24	+0.2
1,799,896	+		LRK54_RS08240	0.36	-0.3
1,799,896	+		LRK54_RS08240	0.36	-1.9
1,799,896	+		LRK54_RS08240	0.36	+0.5
1,799,896	+		LRK54_RS08240	0.36	-0.3
1,799,896	+		LRK54_RS08240	0.36	+0.6
1,799,896	+		LRK54_RS08240	0.36	-0.1
1,799,896	+		LRK54_RS08240	0.36	-0.7
1,799,896	+		LRK54_RS08240	0.36	-2.6
1,799,897	-		LRK54_RS08240	0.36	-0.3
1,799,897	-		LRK54_RS08240	0.36	+0.2
1,799,897	-		LRK54_RS08240	0.36	+0.0
1,799,897	-		LRK54_RS08240	0.36	+0.6
1,799,897	-		LRK54_RS08240	0.36	+0.4
1,799,897	-		LRK54_RS08240	0.36	-1.7
1,799,897	-		LRK54_RS08240	0.36	-1.9
1,799,897	-		LRK54_RS08240	0.36	-0.3
1,799,897	-		LRK54_RS08240	0.36	+0.1
1,799,897	-		LRK54_RS08240	0.36	-1.5
1,800,328	+				-0.5
1,800,328	+				-0.4
1,800,328	+				+0.3
1,800,328	+				-0.2
1,800,329	-				+1.1
1,800,329	-				-0.3
1,800,329	-				-0.3
1,800,384	+				-0.1
1,800,384	+				-0.4
1,800,384	+				-0.5
1,800,384	+				+0.4
1,800,384	+				-0.6
1,800,384	+				-0.8
1,800,384	+				-0.7
1,800,384	+				+0.1
1,800,385	-				+1.5
1,800,385	-				-1.3
1,800,385	-				-0.8
1,800,385	-				+0.2
1,800,385	-				+0.3
1,800,385	-				-0.8
1,800,385	-				+1.5
1,800,385	-				-0.7
1,800,385	-				-0.5
1,800,385	-				-0.5
1,800,538	+				-0.3
1,800,538	+				+1.4
1,800,538	+				+0.6
1,800,538	+				+0.9
1,800,538	+				+1.1
1,800,538	+				-0.3
1,800,538	+				+0.5
1,800,538	+				-0.9
1,800,538	+				+0.2
1,800,539	-				-2.5
1,800,539	-				+0.4
1,800,539	-				-0.9
1,800,539	-				+0.3
1,800,539	-				-1.2
1,800,539	-				+0.5
1,800,539	-				+0.1
1,800,539	-				+0.9
1,800,539	-				-0.5
1,800,539	-				+0.5
1,800,661	+		LRK54_RS08250	0.24	+0.5
1,800,661	+		LRK54_RS08250	0.24	-0.2
1,800,661	+		LRK54_RS08250	0.24	-0.1
1,800,661	+		LRK54_RS08250	0.24	-1.0
1,800,661	+		LRK54_RS08250	0.24	+0.8
1,800,662	-		LRK54_RS08250	0.24	+0.1
1,800,662	-		LRK54_RS08250	0.24	-0.5
1,800,662	-		LRK54_RS08250	0.24	+0.1
1,800,707	-		LRK54_RS08250	0.32	-1.3
1,800,715	+		LRK54_RS08250	0.33	-0.7
1,800,715	+		LRK54_RS08250	0.33	+0.0
1,800,757	+		LRK54_RS08250	0.40	+1.3
1,800,757	+		LRK54_RS08250	0.40	+2.8
1,800,758	-		LRK54_RS08250	0.40	+0.1
1,800,758	-		LRK54_RS08250	0.40	+0.8
1,800,758	-		LRK54_RS08250	0.40	+0.3
1,800,758	-		LRK54_RS08250	0.40	-0.9
1,801,151	+				-0.0
1,801,270	+				-0.1
1,801,278	+				+0.2
1,801,278	+				-1.7
1,801,278	+				-0.3
1,801,278	+				-0.6
1,801,278	+				-0.4
1,801,278	+				-0.3
1,801,279	-				-0.1
1,801,279	-				+0.9
1,801,279	-				-0.0
1,801,279	-				-0.9
1,801,279	-				-0.2
1,801,395	+		LRK54_RS08255	0.45	+0.6
1,801,395	+		LRK54_RS08255	0.45	-0.7
1,801,395	+		LRK54_RS08255	0.45	-0.7
1,801,396	-		LRK54_RS08255	0.45	+2.1
1,801,396	-		LRK54_RS08255	0.45	-0.7
1,801,408	+		LRK54_RS08255	0.49	-2.2
1,801,408	+		LRK54_RS08255	0.49	+0.1
1,801,408	+		LRK54_RS08255	0.49	+1.0
1,801,408	+		LRK54_RS08255	0.49	+0.1
1,801,408	+		LRK54_RS08255	0.49	-0.4
1,801,408	+		LRK54_RS08255	0.49	+0.3
1,801,408	+		LRK54_RS08255	0.49	+0.3
1,801,408	+		LRK54_RS08255	0.49	-0.7
1,801,408	+		LRK54_RS08255	0.49	+0.2
1,801,408	+		LRK54_RS08255	0.49	+0.6
1,801,408	+		LRK54_RS08255	0.49	-0.6
1,801,408	+		LRK54_RS08255	0.49	-1.4
1,801,408	+		LRK54_RS08255	0.49	-0.3
1,801,408	+		LRK54_RS08255	0.49	-0.9
1,801,409	-		LRK54_RS08255	0.49	-1.3
1,801,409	-		LRK54_RS08255	0.49	-0.1
1,801,409	-		LRK54_RS08255	0.49	-0.7
1,801,409	-		LRK54_RS08255	0.49	-0.2
1,801,409	-		LRK54_RS08255	0.49	+0.3
1,801,409	-		LRK54_RS08255	0.49	-0.2
1,801,409	-		LRK54_RS08255	0.49	+0.7
1,801,409	-		LRK54_RS08255	0.49	+1.7
1,801,409	-		LRK54_RS08255	0.49	-0.6
1,801,409	-		LRK54_RS08255	0.49	+0.4
1,801,409	-		LRK54_RS08255	0.49	-0.1
1,801,419	+		LRK54_RS08255	0.53	-2.2
1,801,419	+		LRK54_RS08255	0.53	-1.9
1,801,419	+		LRK54_RS08255	0.53	+1.3
1,801,419	+		LRK54_RS08255	0.53	-0.1
1,801,419	+		LRK54_RS08255	0.53	+0.7
1,801,420	-		LRK54_RS08255	0.53	+0.1
1,801,429	+		LRK54_RS08255	0.56	-0.1
1,801,429	+		LRK54_RS08255	0.56	-0.7
1,801,429	+		LRK54_RS08255	0.56	-0.2
1,801,429	+		LRK54_RS08255	0.56	+0.1
1,801,429	+		LRK54_RS08255	0.56	-0.4
1,801,429	+		LRK54_RS08255	0.56	+1.0
1,801,429	+		LRK54_RS08255	0.56	+0.5
1,801,429	+		LRK54_RS08255	0.56	+0.6
1,801,429	+		LRK54_RS08255	0.56	-2.3
1,801,429	+		LRK54_RS08255	0.56	-0.8
1,801,429	+		LRK54_RS08255	0.56	-0.6
1,801,429	+		LRK54_RS08255	0.56	-0.6
1,801,429	+		LRK54_RS08255	0.56	-0.7
1,801,429	+		LRK54_RS08255	0.56	-1.2
1,801,429	+		LRK54_RS08255	0.56	-0.6
1,801,429	+		LRK54_RS08255	0.56	-1.2
1,801,429	+		LRK54_RS08255	0.56	+0.2
1,801,430	-		LRK54_RS08255	0.57	+0.3
1,801,430	-		LRK54_RS08255	0.57	+1.9
1,801,430	-		LRK54_RS08255	0.57	-0.3
1,801,430	-		LRK54_RS08255	0.57	-0.3
1,801,430	-		LRK54_RS08255	0.57	-0.1
1,801,430	-		LRK54_RS08255	0.57	+0.9
1,801,430	-		LRK54_RS08255	0.57	-0.4
1,801,430	-		LRK54_RS08255	0.57	-0.9
1,801,430	-		LRK54_RS08255	0.57	+2.5
1,801,430	-		LRK54_RS08255	0.57	+0.7
1,801,430	-		LRK54_RS08255	0.57	-0.1
1,801,430	-		LRK54_RS08255	0.57	+0.1
1,801,430	-		LRK54_RS08255	0.57	+0.8
1,801,431	+		LRK54_RS08255	0.57	+0.6
1,801,431	+		LRK54_RS08255	0.57	-0.8
1,801,431	+		LRK54_RS08255	0.57	+0.9
1,801,431	+		LRK54_RS08255	0.57	-0.3
1,801,431	+		LRK54_RS08255	0.57	-0.1
1,801,431	+		LRK54_RS08255	0.57	+0.8
1,801,431	+		LRK54_RS08255	0.57	-0.9
1,801,431	+		LRK54_RS08255	0.57	-2.9
1,801,432	-		LRK54_RS08255	0.57	-0.4
1,801,432	-		LRK54_RS08255	0.57	-0.2
1,801,432	-		LRK54_RS08255	0.57	-0.5
1,801,432	-		LRK54_RS08255	0.57	-0.9
1,801,432	-		LRK54_RS08255	0.57	+0.4
1,801,497	+		LRK54_RS08255	0.80	-0.4
1,801,497	+		LRK54_RS08255	0.80	+0.1
1,801,497	+		LRK54_RS08255	0.80	+1.4
1,801,497	+		LRK54_RS08255	0.80	-1.3
1,801,497	+		LRK54_RS08255	0.80	-0.5
1,801,497	+		LRK54_RS08255	0.80	-1.7
1,801,497	+		LRK54_RS08255	0.80	-0.3
1,801,497	+		LRK54_RS08255	0.80	-1.5
1,801,498	-		LRK54_RS08255	0.80	-0.4
1,801,498	-		LRK54_RS08255	0.80	+1.2
1,801,498	-		LRK54_RS08255	0.80	-0.5
1,801,498	-		LRK54_RS08255	0.80	+1.3
1,801,498	-		LRK54_RS08255	0.80	-0.5
1,801,498	-		LRK54_RS08255	0.80	-0.7
1,801,530	+				+0.9
1,801,530	+				-0.6
1,801,530	+				-1.3
1,801,530	+				-1.4
1,801,530	+				-0.9
1,801,530	+				-0.4
1,801,530	+				-0.1
1,801,530	+				-0.4
1,801,531	-				-0.2
1,801,531	-				-0.1
1,801,531	-				+4.1
1,801,531	-				+0.7
1,801,531	-				+0.1
1,801,531	-				+0.5
1,801,531	-				+0.0
1,801,531	-				-1.3
1,801,531	-				-0.1
1,801,531	-				-0.8
1,801,531	-				+0.1
1,801,531	-				+1.6
1,801,531	-				+1.2
1,801,531	-				+0.5
1,801,531	-				-0.7
1,801,531	-				+0.7
1,801,531	-				-1.3
1,801,531	-				-0.1
1,801,531	-				+0.4
1,801,531	-				+0.6
1,801,531	-				+0.5
1,801,559	+				+0.5
1,801,559	+				-0.5
1,801,559	+				+0.3
1,801,559	+				-0.3
1,801,559	+				-0.3
1,801,559	+				+1.0
1,801,560	-				-0.7
1,801,560	-				-1.7
1,801,560	-				+1.5
1,801,560	-				+0.3
1,801,560	-				+0.9
1,801,706	+				+0.6
1,801,706	+				-1.1
1,801,706	+				+0.3
1,801,706	+				+0.9
1,801,706	+				+0.2
1,801,706	+				+0.4
1,801,706	+				+0.1
1,801,706	+				-1.5
1,801,706	+				+0.7
1,801,706	+				-0.8
1,801,706	+				-2.0
1,801,706	+				+0.2
1,801,707	-				-0.1
1,801,707	-				-0.8
1,801,707	-				-0.1
1,801,707	-				-0.1
1,801,707	-				+0.5
1,801,707	-				+0.0
1,801,707	-				-0.5
1,801,707	-				+0.8
1,801,707	-				-1.2
1,801,707	-				-0.4
1,801,707	-				-1.4
1,801,707	-				-0.9
1,801,707	-				+0.2
1,801,707	-				-0.3
1,801,707	-				-1.6
1,801,707	-				-1.6
1,801,707	-				-0.3
1,801,719	-				+0.2
1,801,835	+		LRK54_RS08260	0.13	+0.3
1,801,836	-		LRK54_RS08260	0.13	-0.2
1,801,836	-		LRK54_RS08260	0.13	-1.2
1,801,836	-		LRK54_RS08260	0.13	+0.9
1,801,967	+		LRK54_RS08260	0.25	-1.4
1,801,967	+		LRK54_RS08260	0.25	+0.7
1,801,967	+		LRK54_RS08260	0.25	-0.1
1,801,968	-		LRK54_RS08260	0.25	-0.4
1,801,968	-		LRK54_RS08260	0.25	-0.2
1,801,968	-		LRK54_RS08260	0.25	-0.5
1,801,968	-		LRK54_RS08260	0.25	+0.1
1,802,024	+		LRK54_RS08260	0.30	-0.2
1,802,024	+		LRK54_RS08260	0.30	-0.4
1,802,024	+		LRK54_RS08260	0.30	+0.5
1,802,024	+		LRK54_RS08260	0.30	+0.1
1,802,024	+		LRK54_RS08260	0.30	+0.0
1,802,024	+		LRK54_RS08260	0.30	-1.1
1,802,024	+		LRK54_RS08260	0.30	-0.4
1,802,024	+		LRK54_RS08260	0.30	-1.4
1,802,024	+		LRK54_RS08260	0.30	-0.1
1,802,024	+		LRK54_RS08260	0.30	+0.3
1,802,024	+		LRK54_RS08260	0.30	-0.4
1,802,024	+		LRK54_RS08260	0.30	-0.2
1,802,024	+		LRK54_RS08260	0.30	-0.1
1,802,024	+		LRK54_RS08260	0.30	+0.2
1,802,024	+		LRK54_RS08260	0.30	+0.4
1,802,024	+		LRK54_RS08260	0.30	-0.3
1,802,024	+		LRK54_RS08260	0.30	-0.4
1,802,024	+		LRK54_RS08260	0.30	+0.2
1,802,024	+		LRK54_RS08260	0.30	-0.4
1,802,024	+		LRK54_RS08260	0.30	-0.7
1,802,024	+		LRK54_RS08260	0.30	+3.5
1,802,024	+		LRK54_RS08260	0.30	+0.0
1,802,024	+		LRK54_RS08260	0.30	-0.8
1,802,024	+		LRK54_RS08260	0.30	-0.7
1,802,024	+		LRK54_RS08260	0.30	+0.5
1,802,024	+		LRK54_RS08260	0.30	-0.5
1,802,024	+		LRK54_RS08260	0.30	-0.7
1,802,025	-		LRK54_RS08260	0.30	+0.6
1,802,025	-		LRK54_RS08260	0.30	-0.5
1,802,025	-		LRK54_RS08260	0.30	+0.2
1,802,025	-		LRK54_RS08260	0.30	+0.9
1,802,025	-		LRK54_RS08260	0.30	-0.2
1,802,025	-		LRK54_RS08260	0.30	-0.1
1,802,025	-		LRK54_RS08260	0.30	-1.1
1,802,025	-		LRK54_RS08260	0.30	+0.1
1,802,025	-		LRK54_RS08260	0.30	+1.1
1,802,025	-		LRK54_RS08260	0.30	-1.9
1,802,025	-		LRK54_RS08260	0.30	-0.5
1,802,025	-		LRK54_RS08260	0.30	+0.9
1,802,025	-		LRK54_RS08260	0.30	+1.1
1,802,025	-		LRK54_RS08260	0.30	-0.6
1,802,025	-		LRK54_RS08260	0.30	+0.0
1,802,025	-		LRK54_RS08260	0.30	-1.1
1,802,025	-		LRK54_RS08260	0.30	+1.8
1,802,025	-		LRK54_RS08260	0.30	-1.9
1,802,025	-		LRK54_RS08260	0.30	-0.0
1,802,025	-		LRK54_RS08260	0.30	+0.9
1,802,025	-		LRK54_RS08260	0.30	-1.5
1,802,025	-		LRK54_RS08260	0.30	-0.3
1,802,084	+		LRK54_RS08260	0.36	-0.3
1,802,084	+		LRK54_RS08260	0.36	-0.7
1,802,085	-		LRK54_RS08260	0.36	+1.5
1,802,085	-		LRK54_RS08260	0.36	+0.5
1,802,085	-		LRK54_RS08260	0.36	+1.3