Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07935

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
1,735,954	+				-0.3
1,735,954	+				-0.4
1,735,954	+				-0.2
1,735,955	-				+0.1
1,735,974	-				-0.7
1,735,974	-				-1.9
1,736,014	+				-0.7
1,736,015	-				+0.3
1,736,015	-				-1.7
1,736,052	+				+2.2
1,736,052	+				-0.3
1,736,052	+				+1.5
1,736,052	+				+0.9
1,736,052	+				+0.2
1,736,052	+				+0.5
1,736,052	+				-1.3
1,736,052	+				-0.5
1,736,053	-				-0.0
1,736,053	-				-0.7
1,736,053	-				+0.1
1,736,053	-				+0.7
1,736,053	-				-0.8
1,736,053	-				-3.1
1,736,053	-				-0.5
1,736,053	-				+2.5
1,736,053	-				-1.8
1,736,097	+		LRK54_RS07930	0.11	+0.3
1,736,097	+		LRK54_RS07930	0.11	+0.2
1,736,098	-		LRK54_RS07930	0.11	+0.9
1,736,098	-		LRK54_RS07930	0.11	-1.7
1,736,104	-		LRK54_RS07930	0.13	+0.2
1,736,154	+		LRK54_RS07930	0.24	-1.2
1,736,154	+		LRK54_RS07930	0.24	+0.5
1,736,154	+		LRK54_RS07930	0.24	-0.5
1,736,154	+		LRK54_RS07930	0.24	+0.2
1,736,154	+		LRK54_RS07930	0.24	-0.5
1,736,154	+		LRK54_RS07930	0.24	-0.6
1,736,154	+		LRK54_RS07930	0.24	+1.9
1,736,154	+		LRK54_RS07930	0.24	+0.3
1,736,154	+		LRK54_RS07930	0.24	-0.4
1,736,155	-		LRK54_RS07930	0.25	-0.7
1,736,155	-		LRK54_RS07930	0.25	+0.9
1,736,155	-		LRK54_RS07930	0.25	+1.7
1,736,155	-		LRK54_RS07930	0.25	+0.7
1,736,155	-		LRK54_RS07930	0.25	-1.0
1,736,155	-		LRK54_RS07930	0.25	+0.3
1,736,155	-		LRK54_RS07930	0.25	-1.1
1,736,155	-		LRK54_RS07930	0.25	-1.1
1,736,469	+				+0.3
1,736,469	+				+0.5
1,736,469	+				-0.1
1,736,469	+				-0.2
1,736,469	+				+2.5
1,736,469	+				+0.7
1,736,469	+				-0.8
1,736,469	+				-0.4
1,736,469	+				+1.7
1,736,469	+				-0.5
1,736,469	+				+0.4
1,736,469	+				-2.5
1,736,469	+				+0.9
1,736,469	+				+0.7
1,736,469	+				+0.2
1,736,469	+				-0.0
1,736,469	+				+0.4
1,736,469	+				+2.5
1,736,469	+				+0.5
1,736,469	+				+0.1
1,736,469	+				+0.3
1,736,469	+				-0.6
1,736,469	+				-0.2
1,736,469	+				+1.4
1,736,469	+				-0.0
1,736,469	+				-0.4
1,736,469	+				-0.3
1,736,469	+				-0.3
1,736,469	+				+1.0
1,736,469	+				+0.9
1,736,470	-				-0.4
1,736,470	-				-0.0
1,736,470	-				-0.4
1,736,470	-				-0.8
1,736,470	-				+0.5
1,736,470	-				-0.3
1,736,470	-				-0.3
1,736,470	-				+0.5
1,736,470	-				-1.2
1,736,470	-				-0.0
1,736,470	-				+1.7
1,736,470	-				-0.2
1,736,470	-				-0.3
1,736,470	-				+0.3
1,736,559	+				-0.7
1,736,611	+				-0.5
1,736,612	-				+0.3
1,736,612	-				+0.7
1,736,612	-				-0.5
1,736,612	-				+0.6
1,736,612	-				+1.0
1,736,612	-				-0.4
1,736,612	-				+0.2
1,736,621	-				-1.0
1,736,621	-				-1.2
1,736,621	-				-1.1
1,736,621	-				-2.3
1,736,693	+				-0.4
1,736,693	+				+0.4
1,736,693	+				+0.3
1,736,693	+				-1.5
1,736,693	+				-0.1
1,736,693	+				-0.1
1,736,694	-				+0.4
1,736,694	-				-0.1
1,736,694	-				-1.2
1,736,694	-				+0.0
1,736,694	-				-0.1
1,736,722	+				-0.2
1,736,722	+				-1.7
1,736,722	+				-1.6
1,736,722	+				-2.3
1,736,722	+				-0.3
1,736,722	+				+0.4
1,736,723	-				-0.0
1,736,723	-				+0.3
1,736,723	-				+0.5
1,736,723	-				-1.3
1,736,723	-				-0.5
1,736,723	-				-0.4
1,736,754	+				-1.1
1,736,754	+				-0.2
1,736,754	+				+0.1
1,736,754	+				-1.1
1,736,754	+				-0.1
1,736,754	+				-0.1
1,736,754	+				+0.7
1,736,755	-				-0.2
1,736,755	-				+0.0
1,736,755	-				+0.4
1,736,803	+				+0.6
1,736,803	+				+0.0
1,736,804	-				+0.3
1,736,804	-				+0.3
1,736,966	-		LRK54_RS07935	0.31	+1.5
1,736,966	-		LRK54_RS07935	0.31	-0.2
1,736,966	-		LRK54_RS07935	0.31	+1.2
1,736,966	-		LRK54_RS07935	0.31	+0.2
1,737,181	+		LRK54_RS07935	0.64	+0.6
1,737,181	+		LRK54_RS07935	0.64	+0.2
1,737,181	+		LRK54_RS07935	0.64	+0.3
1,737,181	+		LRK54_RS07935	0.64	-1.3
1,737,181	+		LRK54_RS07935	0.64	-0.1
1,737,182	-		LRK54_RS07935	0.64	+0.7
1,737,182	-		LRK54_RS07935	0.64	+0.8
1,737,182	-		LRK54_RS07935	0.64	+1.1
1,737,182	-		LRK54_RS07935	0.64	+0.1
1,737,182	-		LRK54_RS07935	0.64	+1.0
1,737,182	-		LRK54_RS07935	0.64	-0.2
1,737,182	-		LRK54_RS07935	0.64	-0.4
1,737,346	+		LRK54_RS07935	0.89	+1.3
1,737,346	+		LRK54_RS07935	0.89	-1.0
1,737,346	+		LRK54_RS07935	0.89	-0.8
1,737,347	-		LRK54_RS07935	0.89	+0.0
1,737,349	-		LRK54_RS07935	0.89	-0.5
1,737,418	+				+0.5
1,737,418	+				-0.5
1,737,419	-				-0.4
1,737,440	+				-0.3
1,737,440	+				-0.1
1,737,440	+				+1.5
1,737,440	+				-0.0
1,737,440	+				-0.2
1,737,440	+				-1.1
1,737,440	+				-0.1
1,737,440	+				-0.4
1,737,440	+				+1.2
1,737,440	+				-0.2
1,737,441	-				+0.0
1,737,441	-				+0.0
1,737,441	-				+0.6
1,737,441	-				+0.2
1,737,441	-				-1.0
1,737,441	-				-0.6
1,737,441	-				-0.7
1,737,441	-				-0.5
1,737,441	-				-0.1
1,737,612	+		LRK54_RS07940	0.15	+0.1
1,737,612	+		LRK54_RS07940	0.15	+1.8
1,737,613	-		LRK54_RS07940	0.15	-0.4
1,737,613	-		LRK54_RS07940	0.15	+0.5
1,737,714	+		LRK54_RS07940	0.25	-0.1
1,737,714	+		LRK54_RS07940	0.25	+0.2
1,737,714	+		LRK54_RS07940	0.25	+0.3
1,737,714	+		LRK54_RS07940	0.25	+0.2
1,737,714	+		LRK54_RS07940	0.25	+0.0
1,737,714	+		LRK54_RS07940	0.25	-2.7
1,737,714	+		LRK54_RS07940	0.25	+0.2
1,737,714	+		LRK54_RS07940	0.25	-0.2
1,737,714	+		LRK54_RS07940	0.25	+1.0
1,737,714	+		LRK54_RS07940	0.25	-0.7
1,737,714	+		LRK54_RS07940	0.25	+1.0
1,737,714	+		LRK54_RS07940	0.25	+0.2
1,737,715	-		LRK54_RS07940	0.25	+0.3
1,737,715	-		LRK54_RS07940	0.25	+0.5
1,737,715	-		LRK54_RS07940	0.25	-1.4
1,737,715	-		LRK54_RS07940	0.25	+0.2
1,737,715	-		LRK54_RS07940	0.25	+0.1
1,737,715	-		LRK54_RS07940	0.25	-0.1
1,737,715	-		LRK54_RS07940	0.25	+2.5
1,737,715	-		LRK54_RS07940	0.25	-0.5
1,737,824	-		LRK54_RS07940	0.36	-0.7
1,737,824	-		LRK54_RS07940	0.36	+0.3
1,737,879	+		LRK54_RS07940	0.41	+0.5
1,737,879	+		LRK54_RS07940	0.41	-0.0
1,737,879	+		LRK54_RS07940	0.41	+0.3
1,737,879	+		LRK54_RS07940	0.41	+0.1
1,737,879	+		LRK54_RS07940	0.41	-0.3
1,737,880	-		LRK54_RS07940	0.41	-1.3
1,737,880	-		LRK54_RS07940	0.41	-0.4
1,737,880	-		LRK54_RS07940	0.41	-1.0
1,737,885	+		LRK54_RS07940	0.41	+1.5
1,737,885	+		LRK54_RS07940	0.41	+1.5
1,737,885	+		LRK54_RS07940	0.41	+0.3
1,737,885	+		LRK54_RS07940	0.41	+0.9
1,737,885	+		LRK54_RS07940	0.41	-1.1
1,737,885	+		LRK54_RS07940	0.41	-0.6
1,737,885	+		LRK54_RS07940	0.41	+0.7
1,737,885	+		LRK54_RS07940	0.41	-0.1
1,737,885	+		LRK54_RS07940	0.41	+0.2
1,737,885	+		LRK54_RS07940	0.41	+0.7
1,737,886	-		LRK54_RS07940	0.41	+1.2
1,737,886	-		LRK54_RS07940	0.41	+0.0
1,737,886	-		LRK54_RS07940	0.41	+0.4
1,737,886	-		LRK54_RS07940	0.41	+0.2
1,737,886	-		LRK54_RS07940	0.41	+0.2
1,737,886	-		LRK54_RS07940	0.41	+0.3
1,738,131	+		LRK54_RS07940	0.65	-0.3
1,738,131	+		LRK54_RS07940	0.65	-0.4
1,738,131	+		LRK54_RS07940	0.65	+0.2
1,738,131	+		LRK54_RS07940	0.65	+0.6
1,738,132	-		LRK54_RS07940	0.65	-0.2
1,738,132	-		LRK54_RS07940	0.65	+0.6