Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07705

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
1,673,459	+		LRK54_RS07700	0.70	-1.7
1,673,459	+		LRK54_RS07700	0.70	+0.3
1,673,459	+		LRK54_RS07700	0.70	+0.7
1,673,459	+		LRK54_RS07700	0.70	-0.4
1,673,460	-		LRK54_RS07700	0.70	-1.4
1,673,460	-		LRK54_RS07700	0.70	+0.1
1,673,462	+		LRK54_RS07700	0.70	+0.1
1,673,462	+		LRK54_RS07700	0.70	+0.1
1,673,462	+		LRK54_RS07700	0.70	-0.4
1,673,462	+		LRK54_RS07700	0.70	-0.2
1,673,462	+		LRK54_RS07700	0.70	-0.4
1,673,462	+		LRK54_RS07700	0.70	-1.6
1,673,462	+		LRK54_RS07700	0.70	-1.4
1,673,462	+		LRK54_RS07700	0.70	-0.2
1,673,462	+		LRK54_RS07700	0.70	+2.5
1,673,462	+		LRK54_RS07700	0.70	+0.3
1,673,462	+		LRK54_RS07700	0.70	-1.1
1,673,463	-		LRK54_RS07700	0.70	+2.0
1,673,463	-		LRK54_RS07700	0.70	+0.3
1,673,463	-		LRK54_RS07700	0.70	-1.1
1,673,463	-		LRK54_RS07700	0.70	-0.3
1,673,522	+		LRK54_RS07700	0.72	+0.5
1,673,522	+		LRK54_RS07700	0.72	+0.8
1,673,523	-		LRK54_RS07700	0.72	-0.2
1,673,523	-		LRK54_RS07700	0.72	+2.9
1,673,570	+		LRK54_RS07700	0.74	+0.7
1,673,570	+		LRK54_RS07700	0.74	-2.2
1,673,570	+		LRK54_RS07700	0.74	+0.6
1,673,570	+		LRK54_RS07700	0.74	+0.2
1,673,570	+		LRK54_RS07700	0.74	-0.6
1,673,570	+		LRK54_RS07700	0.74	-0.1
1,673,571	-		LRK54_RS07700	0.74	+0.3
1,673,571	-		LRK54_RS07700	0.74	-0.9
1,673,571	-		LRK54_RS07700	0.74	-0.2
1,673,571	-		LRK54_RS07700	0.74	+0.2
1,673,571	-		LRK54_RS07700	0.74	-0.5
1,673,571	-		LRK54_RS07700	0.74	+0.6
1,673,571	-		LRK54_RS07700	0.74	-0.2
1,673,666	+		LRK54_RS07700	0.77	-0.3
1,673,666	+		LRK54_RS07700	0.77	+0.2
1,673,666	+		LRK54_RS07700	0.77	-0.1
1,673,667	-		LRK54_RS07700	0.77	-0.5
1,673,667	-		LRK54_RS07700	0.77	-0.2
1,673,667	-		LRK54_RS07700	0.77	+0.8
1,673,667	-		LRK54_RS07700	0.77	-0.2
1,673,667	-		LRK54_RS07700	0.77	+1.0
1,673,667	-		LRK54_RS07700	0.77	-0.4
1,673,667	-		LRK54_RS07700	0.77	-0.1
1,673,828	+		LRK54_RS07700	0.83	-0.7
1,673,828	+		LRK54_RS07700	0.83	+0.1
1,673,828	+		LRK54_RS07700	0.83	-0.1
1,673,828	+		LRK54_RS07700	0.83	-1.0
1,673,828	+		LRK54_RS07700	0.83	+0.1
1,673,828	+		LRK54_RS07700	0.83	-0.1
1,673,828	+		LRK54_RS07700	0.83	-1.6
1,673,828	+		LRK54_RS07700	0.83	+0.4
1,673,828	+		LRK54_RS07700	0.83	+1.3
1,673,828	+		LRK54_RS07700	0.83	-0.1
1,673,828	+		LRK54_RS07700	0.83	+0.0
1,673,828	+		LRK54_RS07700	0.83	-0.2
1,673,828	+		LRK54_RS07700	0.83	-0.3
1,673,829	-		LRK54_RS07700	0.83	-0.4
1,673,829	-		LRK54_RS07700	0.83	-1.3
1,673,829	-		LRK54_RS07700	0.83	-0.1
1,673,829	-		LRK54_RS07700	0.83	-0.6
1,673,829	-		LRK54_RS07700	0.83	+0.9
1,673,829	-		LRK54_RS07700	0.83	-0.1
1,673,829	-		LRK54_RS07700	0.83	+0.6
1,673,829	-		LRK54_RS07700	0.83	+1.3
1,674,224	+				+0.5
1,674,224	+				+1.2
1,674,224	+				-0.3
1,674,224	+				-0.2
1,674,224	+				+0.2
1,674,224	+				+0.9
1,674,225	-				+1.9
1,674,225	-				-1.9
1,674,225	-				+1.1
1,674,225	-				-1.0
1,674,225	-				-0.4
1,674,284	+				+0.1
1,674,284	+				-0.0
1,674,285	-				-0.6
1,674,285	-				-1.1
1,674,285	-				-0.3
1,674,285	-				-1.8
1,674,285	-				-0.2
1,674,285	-				+0.6
1,674,356	+				-0.6
1,674,356	+				+0.0
1,674,356	+				-0.0
1,674,356	+				+1.1
1,674,356	+				-1.1
1,674,356	+				-0.9
1,674,356	+				-0.1
1,674,357	-				-0.1
1,674,357	-				-0.8
1,674,357	-				-0.5
1,674,473	+				-1.8
1,674,473	+				-0.9
1,674,474	-				+0.9
1,674,474	-				+0.5
1,674,492	+				+0.6
1,674,492	+				-0.3
1,674,492	+				-0.7
1,674,492	+				-0.7
1,674,492	+				-1.0
1,674,493	-				+0.3
1,674,493	-				+0.5
1,674,493	-				+0.0
1,674,493	-				+1.8
1,674,493	-				-0.3
1,674,519	+		LRK54_RS07705	0.11	-0.2
1,674,519	+		LRK54_RS07705	0.11	-0.0
1,674,519	+		LRK54_RS07705	0.11	+1.3
1,674,519	+		LRK54_RS07705	0.11	+0.5
1,674,519	+		LRK54_RS07705	0.11	+2.5
1,674,519	+		LRK54_RS07705	0.11	+0.8
1,674,519	+		LRK54_RS07705	0.11	-0.5
1,674,520	-		LRK54_RS07705	0.11	-0.3
1,674,520	-		LRK54_RS07705	0.11	-0.3
1,674,520	-		LRK54_RS07705	0.11	-0.1
1,674,520	-		LRK54_RS07705	0.11	-0.5
1,674,520	-		LRK54_RS07705	0.11	-1.6
1,674,585	+		LRK54_RS07705	0.17	-1.3
1,674,585	+		LRK54_RS07705	0.17	-0.3
1,674,586	-		LRK54_RS07705	0.17	+0.6
1,674,586	-		LRK54_RS07705	0.17	-1.2
1,674,586	-		LRK54_RS07705	0.17	+1.0
1,674,586	-		LRK54_RS07705	0.17	-0.4
1,674,606	+		LRK54_RS07705	0.19	+0.9
1,674,606	+		LRK54_RS07705	0.19	+1.1
1,674,606	+		LRK54_RS07705	0.19	-0.0
1,674,607	-		LRK54_RS07705	0.19	+1.0
1,674,607	-		LRK54_RS07705	0.19	-0.5
1,674,765	+		LRK54_RS07705	0.33	-0.9
1,674,765	+		LRK54_RS07705	0.33	+1.2
1,674,765	+		LRK54_RS07705	0.33	-1.8
1,674,766	-		LRK54_RS07705	0.33	-0.1
1,674,766	-		LRK54_RS07705	0.33	-0.4
1,674,766	-		LRK54_RS07705	0.33	+0.8
1,674,878	+		LRK54_RS07705	0.43	-1.5
1,674,878	+		LRK54_RS07705	0.43	+2.5
1,674,878	+		LRK54_RS07705	0.43	-1.3
1,674,878	+		LRK54_RS07705	0.43	-0.2
1,674,879	-		LRK54_RS07705	0.44	+1.8
1,675,047	+		LRK54_RS07705	0.59	-0.0
1,675,047	+		LRK54_RS07705	0.59	+1.2
1,675,047	+		LRK54_RS07705	0.59	+1.1
1,675,167	+		LRK54_RS07705	0.70	-1.1
1,675,167	+		LRK54_RS07705	0.70	-0.3
1,675,167	+		LRK54_RS07705	0.70	-0.1
1,675,168	-		LRK54_RS07705	0.70	-0.7
1,675,290	+		LRK54_RS07705	0.81	-0.8
1,675,290	+		LRK54_RS07705	0.81	-0.3
1,675,291	-		LRK54_RS07705	0.81	-0.1
1,675,291	-		LRK54_RS07705	0.81	+1.7
1,675,291	-		LRK54_RS07705	0.81	+2.9
1,675,299	+		LRK54_RS07705	0.82	-0.2
1,675,299	+		LRK54_RS07705	0.82	+0.6
1,675,299	+		LRK54_RS07705	0.82	+1.3
1,675,299	+		LRK54_RS07705	0.82	-0.1
1,675,299	+		LRK54_RS07705	0.82	-0.1
1,675,300	-		LRK54_RS07705	0.82	+1.7
1,675,300	-		LRK54_RS07705	0.82	+0.5
1,675,300	-		LRK54_RS07705	0.82	+0.4
1,675,300	-		LRK54_RS07705	0.82	+1.5
1,675,300	-		LRK54_RS07705	0.82	+0.0
1,675,300	-		LRK54_RS07705	0.82	-0.2
1,675,300	-		LRK54_RS07705	0.82	+0.2
1,675,652	+				-1.3
1,675,652	+				-0.1
1,675,652	+				-0.4
1,675,652	+				-1.1
1,675,652	+				+0.4
1,675,652	+				-1.4
1,675,652	+				+1.0
1,675,652	+				-0.7
1,675,652	+				-1.0
1,675,652	+				+1.4
1,675,652	+				+1.5
1,675,652	+				-0.1
1,675,652	+				-0.7
1,675,652	+				+1.3
1,675,653	-				-0.9
1,675,653	-				-1.2
1,675,653	-				-0.8
1,675,653	-				+0.1
1,675,653	-				-0.5
1,675,653	-				+0.4
1,675,653	-				-0.3
1,675,653	-				+0.2
1,675,653	-				-0.7
1,675,692	+				-0.4
1,675,692	+				+0.2
1,675,692	+				+0.2
1,675,692	+				-1.1
1,675,693	-				-1.0
1,675,693	-				+0.2
1,675,715	+				+1.5
1,675,715	+				-2.9
1,675,715	+				+0.3
1,675,715	+				-1.1
1,675,715	+				+0.5
1,675,715	+				-0.5
1,675,715	+				-1.3
1,675,715	+				-0.3
1,675,715	+				+0.5
1,675,715	+				-0.8
1,675,715	+				-0.8
1,675,715	+				-1.1
1,675,715	+				+0.0
1,675,715	+				-0.8
1,675,715	+				+0.5
1,675,715	+				-0.7
1,675,715	+				-0.7
1,675,715	+				-0.1
1,675,715	+				+0.3
1,675,715	+				-1.2
1,675,715	+				+0.3
1,675,715	+				-0.3
1,675,715	+				+0.7
1,675,715	+				-0.2
1,675,715	+				-1.0
1,675,715	+				-0.4
1,675,715	+				+0.5
1,675,715	+				+0.6
1,675,715	+				-0.4
1,675,715	+				-0.1
1,675,715	+				-0.9
1,675,715	+				+1.2
1,675,715	+				-1.1
1,675,715	+				-0.1
1,675,715	+				-1.0
1,675,715	+				+0.2
1,675,715	+				-0.1
1,675,715	+				-0.0
1,675,715	+				+0.6
1,675,715	+				+0.7
1,675,715	+				+0.6
1,675,715	+				+0.4
1,675,715	+				-0.7
1,675,715	+				-1.0
1,675,715	+				-0.5
1,675,715	+				+0.4
1,675,715	+				-0.7
1,675,715	+				+0.1
1,675,715	+				-0.3
1,675,716	-				-1.1
1,675,716	-				+0.6
1,675,716	-				-1.0
1,675,716	-				+2.5
1,675,716	-				-0.6
1,675,716	-				+0.7
1,675,716	-				-0.5
1,675,716	-				-0.1
1,675,716	-				-0.2
1,675,716	-				+0.2
1,675,716	-				+0.7
1,675,716	-				-0.8
1,675,716	-				-0.5
1,675,716	-				+0.1
1,675,716	-				+0.6
1,675,716	-				-0.1
1,675,716	-				+0.5
1,675,716	-				-0.9
1,675,716	-				-0.6
1,675,716	-				-1.1
1,675,716	-				-0.3
1,675,716	-				+0.3
1,675,716	-				-0.3
1,675,716	-				+1.5
1,675,716	-				+0.2
1,675,716	-				-0.6
1,675,716	-				+0.8
1,675,716	-				+0.3
1,675,716	-				+0.3
1,675,716	-				-0.8
1,675,716	-				+0.1
1,675,716	-				+1.8
1,675,716	-				+2.1
1,675,716	-				+0.2
1,675,716	-				+0.6
1,675,716	-				-0.1
1,675,716	-				+0.3
1,675,716	-				-0.5
1,675,716	-				+1.1
1,675,716	-				+0.3
1,675,716	-				-0.3
1,675,716	-				-0.3
1,675,723	+				-0.5
1,675,723	+				+0.6
1,675,723	+				-0.1
1,675,724	-				+1.5
1,675,724	-				-0.9
1,675,859	+				+0.6
1,675,859	+				+1.5
1,675,859	+				+1.0
1,675,859	+				+0.9
1,675,859	+				-0.3
1,675,859	+				-2.1
1,675,859	+				+0.6
1,675,859	+				-0.1
1,675,859	+				+0.4
1,675,859	+				-0.4
1,675,860	-				+0.3
1,675,860	-				+0.3
1,675,860	-				+0.2
1,675,860	-				+0.3
1,675,860	-				+0.1
1,675,860	-				-0.5
1,676,043	+				-0.7
1,676,043	+				-0.6
1,676,043	+				-0.4
1,676,043	+				+0.9
1,676,044	-				+2.5
1,676,044	-				+0.1
1,676,044	-				+1.7
1,676,044	-				+1.0
1,676,080	+		LRK54_RS07710	0.12	+0.4
1,676,081	-		LRK54_RS07710	0.12	+0.0
1,676,081	-		LRK54_RS07710	0.12	-0.5
1,676,081	-		LRK54_RS07710	0.12	-1.5
1,676,081	-		LRK54_RS07710	0.12	+0.1
1,676,081	-		LRK54_RS07710	0.12	-1.1
1,676,107	+		LRK54_RS07710	0.14	-1.4
1,676,107	+		LRK54_RS07710	0.14	-1.3
1,676,107	+		LRK54_RS07710	0.14	-0.8
1,676,107	+		LRK54_RS07710	0.14	-0.4
1,676,107	+		LRK54_RS07710	0.14	-0.0
1,676,107	+		LRK54_RS07710	0.14	-0.3
1,676,107	+		LRK54_RS07710	0.14	+0.6
1,676,107	+		LRK54_RS07710	0.14	+0.3
1,676,107	+		LRK54_RS07710	0.14	-1.1
1,676,107	+		LRK54_RS07710	0.14	-0.3
1,676,107	+		LRK54_RS07710	0.14	-1.8
1,676,108	-		LRK54_RS07710	0.14	-1.5
1,676,108	-		LRK54_RS07710	0.14	+0.7
1,676,108	-		LRK54_RS07710	0.14	+0.3
1,676,108	-		LRK54_RS07710	0.14	-0.3
1,676,108	-		LRK54_RS07710	0.14	-0.1
1,676,108	-		LRK54_RS07710	0.14	+1.5
1,676,108	-		LRK54_RS07710	0.14	-0.2
1,676,108	-		LRK54_RS07710	0.14	+0.7
1,676,108	-		LRK54_RS07710	0.14	-1.6
1,676,108	-		LRK54_RS07710	0.14	+1.2
1,676,108	-		LRK54_RS07710	0.14	+0.3
1,676,108	-		LRK54_RS07710	0.14	+0.2
1,676,108	-		LRK54_RS07710	0.14	-0.1
1,676,116	+		LRK54_RS07710	0.15	+1.1
1,676,116	+		LRK54_RS07710	0.15	+0.9
1,676,116	+		LRK54_RS07710	0.15	-0.5
1,676,116	+		LRK54_RS07710	0.15	-0.1
1,676,116	+		LRK54_RS07710	0.15	+0.3
1,676,117	-		LRK54_RS07710	0.15	+0.4
1,676,117	-		LRK54_RS07710	0.15	+0.5
1,676,117	-		LRK54_RS07710	0.15	-0.1
1,676,117	-		LRK54_RS07710	0.15	+1.0
1,676,117	-		LRK54_RS07710	0.15	-0.1
1,676,117	-		LRK54_RS07710	0.15	+1.0
1,676,317	+		LRK54_RS07710	0.30	+0.3
1,676,317	+		LRK54_RS07710	0.30	+0.4
1,676,317	+		LRK54_RS07710	0.30	+0.1
1,676,317	+		LRK54_RS07710	0.30	+0.7
1,676,318	-		LRK54_RS07710	0.30	+0.0
1,676,318	-		LRK54_RS07710	0.30	-0.0
1,676,318	-		LRK54_RS07710	0.30	+0.6
1,676,318	-		LRK54_RS07710	0.30	+0.6
1,676,318	-		LRK54_RS07710	0.30	+0.7
1,676,318	-		LRK54_RS07710	0.30	+0.7