Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07575

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
1,629,306	+		LRK54_RS07565	0.64	+1.2
1,629,307	-		LRK54_RS07565	0.64	+0.7
1,629,307	-		LRK54_RS07565	0.64	+0.3
1,629,345	+		LRK54_RS07565	0.67	-0.7
1,629,345	+		LRK54_RS07565	0.67	-1.2
1,629,345	+		LRK54_RS07565	0.67	-1.2
1,629,345	+		LRK54_RS07565	0.67	-0.8
1,629,345	+		LRK54_RS07565	0.67	+0.2
1,629,346	-		LRK54_RS07565	0.67	+1.2
1,629,346	-		LRK54_RS07565	0.67	-0.1
1,629,346	-		LRK54_RS07565	0.67	+0.1
1,629,346	-		LRK54_RS07565	0.67	-1.0
1,629,346	-		LRK54_RS07565	0.67	+1.2
1,629,349	+		LRK54_RS07565	0.67	+0.0
1,629,349	+		LRK54_RS07565	0.67	-1.4
1,629,349	+		LRK54_RS07565	0.67	+0.7
1,629,349	+		LRK54_RS07565	0.67	+0.2
1,629,349	+		LRK54_RS07565	0.67	+0.7
1,629,349	+		LRK54_RS07565	0.67	-0.4
1,629,349	+		LRK54_RS07565	0.67	-0.5
1,629,349	+		LRK54_RS07565	0.67	+0.1
1,629,349	+		LRK54_RS07565	0.67	-0.0
1,629,349	+		LRK54_RS07565	0.67	-0.8
1,629,349	+		LRK54_RS07565	0.67	+1.4
1,629,349	+		LRK54_RS07565	0.67	-0.5
1,629,349	+		LRK54_RS07565	0.67	-0.3
1,629,350	-		LRK54_RS07565	0.67	-0.3
1,629,350	-		LRK54_RS07565	0.67	-0.1
1,629,350	-		LRK54_RS07565	0.67	-0.5
1,629,350	-		LRK54_RS07565	0.67	+0.2
1,629,350	-		LRK54_RS07565	0.67	-1.0
1,629,350	-		LRK54_RS07565	0.67	-0.9
1,629,350	-		LRK54_RS07565	0.67	+0.0
1,629,350	-		LRK54_RS07565	0.67	+0.1
1,629,350	-		LRK54_RS07565	0.67	-0.8
1,629,350	-		LRK54_RS07565	0.67	+1.5
1,629,364	+		LRK54_RS07565	0.68	+0.0
1,629,364	+		LRK54_RS07565	0.68	-0.4
1,629,364	+		LRK54_RS07565	0.68	+0.9
1,629,364	+		LRK54_RS07565	0.68	+0.3
1,629,364	+		LRK54_RS07565	0.68	+0.5
1,629,364	+		LRK54_RS07565	0.68	-0.8
1,629,364	+		LRK54_RS07565	0.68	-2.2
1,629,364	+		LRK54_RS07565	0.68	+0.3
1,629,364	+		LRK54_RS07565	0.68	-0.4
1,629,364	+		LRK54_RS07565	0.68	-0.8
1,629,365	-		LRK54_RS07565	0.68	-0.3
1,629,365	-		LRK54_RS07565	0.68	-0.1
1,629,365	-		LRK54_RS07565	0.68	-0.3
1,629,365	-		LRK54_RS07565	0.68	+0.8
1,629,365	-		LRK54_RS07565	0.68	-2.0
1,629,387	+		LRK54_RS07565	0.70	+0.6
1,629,387	+		LRK54_RS07565	0.70	-0.5
1,629,387	+		LRK54_RS07565	0.70	-0.1
1,629,387	+		LRK54_RS07565	0.70	-0.7
1,629,387	+		LRK54_RS07565	0.70	-1.1
1,629,387	+		LRK54_RS07565	0.70	-0.3
1,629,387	+		LRK54_RS07565	0.70	+1.0
1,629,387	+		LRK54_RS07565	0.70	-0.7
1,629,387	+		LRK54_RS07565	0.70	-2.1
1,629,387	+		LRK54_RS07565	0.70	-0.8
1,629,387	+		LRK54_RS07565	0.70	+0.9
1,629,387	+		LRK54_RS07565	0.70	+0.4
1,629,387	+		LRK54_RS07565	0.70	-1.0
1,629,388	-		LRK54_RS07565	0.70	+0.9
1,629,388	-		LRK54_RS07565	0.70	-0.0
1,629,388	-		LRK54_RS07565	0.70	-0.9
1,629,388	-		LRK54_RS07565	0.70	-0.6
1,629,388	-		LRK54_RS07565	0.70	-0.3
1,629,388	-		LRK54_RS07565	0.70	+0.1
1,629,388	-		LRK54_RS07565	0.70	-0.2
1,629,388	-		LRK54_RS07565	0.70	+0.3
1,629,388	-		LRK54_RS07565	0.70	-0.2
1,629,388	-		LRK54_RS07565	0.70	+0.4
1,629,388	-		LRK54_RS07565	0.70	-1.2
1,629,388	-		LRK54_RS07565	0.70	+0.7
1,629,388	-		LRK54_RS07565	0.70	+0.6
1,629,388	-		LRK54_RS07565	0.70	-0.6
1,629,388	-		LRK54_RS07565	0.70	-0.5
1,629,388	-		LRK54_RS07565	0.70	+0.2
1,629,388	-		LRK54_RS07565	0.70	-0.6
1,629,388	-		LRK54_RS07565	0.70	-0.8
1,629,388	-		LRK54_RS07565	0.70	-0.5
1,629,388	-		LRK54_RS07565	0.70	+0.6
1,629,388	-		LRK54_RS07565	0.70	+0.5
1,629,388	-		LRK54_RS07565	0.70	-0.7
1,629,388	-		LRK54_RS07565	0.70	-0.0
1,629,388	-		LRK54_RS07565	0.70	-0.1
1,629,388	-		LRK54_RS07565	0.70	-0.3
1,629,399	+		LRK54_RS07565	0.71	+0.6
1,629,399	+		LRK54_RS07565	0.71	+0.6
1,629,399	+		LRK54_RS07565	0.71	+0.0
1,629,399	+		LRK54_RS07565	0.71	-0.2
1,629,399	+		LRK54_RS07565	0.71	-2.2
1,629,399	+		LRK54_RS07565	0.71	-0.4
1,629,399	+		LRK54_RS07565	0.71	+0.1
1,629,399	+		LRK54_RS07565	0.71	-2.5
1,629,399	+		LRK54_RS07565	0.71	-0.8
1,629,399	+		LRK54_RS07565	0.71	+1.7
1,629,399	+		LRK54_RS07565	0.71	-1.7
1,629,399	+		LRK54_RS07565	0.71	+0.7
1,629,399	+		LRK54_RS07565	0.71	-1.6
1,629,400	-		LRK54_RS07565	0.71	-1.0
1,629,400	-		LRK54_RS07565	0.71	-1.3
1,629,400	-		LRK54_RS07565	0.71	+0.1
1,629,400	-		LRK54_RS07565	0.71	-0.2
1,629,400	-		LRK54_RS07565	0.71	-0.1
1,629,400	-		LRK54_RS07565	0.71	+0.6
1,629,400	-		LRK54_RS07565	0.71	-0.2
1,629,405	+		LRK54_RS07565	0.71	-0.1
1,629,405	+		LRK54_RS07565	0.71	-0.9
1,629,405	+		LRK54_RS07565	0.71	+0.8
1,629,405	+		LRK54_RS07565	0.71	-0.4
1,629,405	+		LRK54_RS07565	0.71	+0.3
1,629,405	+		LRK54_RS07565	0.71	-2.0
1,629,405	+		LRK54_RS07565	0.71	+0.9
1,629,405	+		LRK54_RS07565	0.71	-1.1
1,629,405	+		LRK54_RS07565	0.71	+0.6
1,629,405	+		LRK54_RS07565	0.71	-1.3
1,629,405	+		LRK54_RS07565	0.71	+0.4
1,629,405	+		LRK54_RS07565	0.71	+0.4
1,629,405	+		LRK54_RS07565	0.71	+0.8
1,629,406	-		LRK54_RS07565	0.71	-0.5
1,629,406	-		LRK54_RS07565	0.71	-1.0
1,629,406	-		LRK54_RS07565	0.71	+0.1
1,629,406	-		LRK54_RS07565	0.71	-0.8
1,629,406	-		LRK54_RS07565	0.71	-0.3
1,629,406	-		LRK54_RS07565	0.71	+1.0
1,629,406	-		LRK54_RS07565	0.71	-1.9
1,629,407	+		LRK54_RS07565	0.71	-0.9
1,629,407	+		LRK54_RS07565	0.71	-0.5
1,629,407	+		LRK54_RS07565	0.71	-0.7
1,629,407	+		LRK54_RS07565	0.71	+1.7
1,629,407	+		LRK54_RS07565	0.71	+0.3
1,629,407	+		LRK54_RS07565	0.71	+0.8
1,629,407	+		LRK54_RS07565	0.71	-1.0
1,629,408	-		LRK54_RS07565	0.72	-0.5
1,629,408	-		LRK54_RS07565	0.72	-0.5
1,629,408	-		LRK54_RS07565	0.72	+0.0
1,629,408	-		LRK54_RS07565	0.72	-0.2
1,629,408	-		LRK54_RS07565	0.72	+1.1
1,629,408	-		LRK54_RS07565	0.72	+0.4
1,629,435	+		LRK54_RS07565	0.74	-0.1
1,629,435	+		LRK54_RS07565	0.74	+0.2
1,629,435	+		LRK54_RS07565	0.74	-0.2
1,629,435	+		LRK54_RS07565	0.74	+1.0
1,629,435	+		LRK54_RS07565	0.74	-0.7
1,629,435	+		LRK54_RS07565	0.74	-0.6
1,629,435	+		LRK54_RS07565	0.74	-0.6
1,629,435	+		LRK54_RS07565	0.74	-1.7
1,629,435	+		LRK54_RS07565	0.74	+0.2
1,629,435	+		LRK54_RS07565	0.74	-1.7
1,629,435	+		LRK54_RS07565	0.74	-1.7
1,629,435	+		LRK54_RS07565	0.74	+0.5
1,629,436	-		LRK54_RS07565	0.74	-0.6
1,629,436	-		LRK54_RS07565	0.74	-0.1
1,629,436	-		LRK54_RS07565	0.74	-0.6
1,629,436	-		LRK54_RS07565	0.74	-0.8
1,629,436	-		LRK54_RS07565	0.74	-0.0
1,629,436	-		LRK54_RS07565	0.74	+0.7
1,629,436	-		LRK54_RS07565	0.74	-0.8
1,629,436	-		LRK54_RS07565	0.74	-0.1
1,629,436	-		LRK54_RS07565	0.74	+0.4
1,629,436	-		LRK54_RS07565	0.74	-0.1
1,629,436	-		LRK54_RS07565	0.74	-1.5
1,629,492	+		LRK54_RS07565	0.78	-0.9
1,629,492	+		LRK54_RS07565	0.78	-0.6
1,629,492	+		LRK54_RS07565	0.78	+0.0
1,629,492	+		LRK54_RS07565	0.78	+0.2
1,629,492	+		LRK54_RS07565	0.78	-0.7
1,629,493	-		LRK54_RS07565	0.78	-0.6
1,629,493	-		LRK54_RS07565	0.78	-0.7
1,629,493	-		LRK54_RS07565	0.78	-0.1
1,629,493	-		LRK54_RS07565	0.78	-1.3
1,629,493	-		LRK54_RS07565	0.78	+0.7
1,629,663	+				-0.8
1,629,663	+				+0.6
1,629,663	+				+0.0
1,629,663	+				-0.9
1,629,663	+				-0.7
1,629,663	+				+0.5
1,629,663	+				-0.8
1,629,664	-				-0.5
1,629,664	-				-0.3
1,629,664	-				+1.4
1,629,664	-				-0.3
1,629,664	-				-1.3
1,629,664	-				-0.3
1,629,847	+				+0.3
1,629,847	+				+0.5
1,629,847	+				+0.2
1,629,847	+				-0.3
1,629,847	+				+0.1
1,629,848	-				-0.1
1,629,848	-				-0.3
1,629,848	-				-0.9
1,629,855	-				+0.0
1,629,919	+				-0.4
1,629,919	+				-0.0
1,629,991	+		LRK54_RS07570	0.16	-0.6
1,630,066	+		LRK54_RS07570	0.37	+0.6
1,630,066	+		LRK54_RS07570	0.37	-1.1
1,630,066	+		LRK54_RS07570	0.37	+1.1
1,630,067	-		LRK54_RS07570	0.37	-0.4
1,630,067	-		LRK54_RS07570	0.37	-0.6
1,630,377	+		LRK54_RS07575	0.32	+2.3
1,630,377	+		LRK54_RS07575	0.32	+0.6
1,630,377	+		LRK54_RS07575	0.32	+0.2
1,630,377	+		LRK54_RS07575	0.32	-0.4
1,630,377	+		LRK54_RS07575	0.32	+1.5
1,630,378	-		LRK54_RS07575	0.33	+2.3
1,630,378	-		LRK54_RS07575	0.33	-0.1
1,630,378	-		LRK54_RS07575	0.33	+0.2
1,630,434	+		LRK54_RS07575	0.52	-0.2
1,630,434	+		LRK54_RS07575	0.52	-0.6
1,630,434	+		LRK54_RS07575	0.52	-0.8
1,630,434	+		LRK54_RS07575	0.52	-1.6
1,630,434	+		LRK54_RS07575	0.52	+0.9
1,630,434	+		LRK54_RS07575	0.52	+0.5
1,630,435	-		LRK54_RS07575	0.53	-0.2
1,630,435	-		LRK54_RS07575	0.53	+0.2
1,630,435	-		LRK54_RS07575	0.53	+0.4
1,630,435	-		LRK54_RS07575	0.53	-0.0
1,630,435	-		LRK54_RS07575	0.53	-1.2
1,630,435	-		LRK54_RS07575	0.53	+0.2
1,630,435	-		LRK54_RS07575	0.53	+1.4
1,630,435	-		LRK54_RS07575	0.53	+0.4
1,630,435	-		LRK54_RS07575	0.53	+0.8
1,630,435	-		LRK54_RS07575	0.53	-0.2
1,630,595	+				-1.5
1,630,596	-				+0.8
1,630,679	+		LRK54_RS07580	0.24	-1.4
1,630,679	+		LRK54_RS07580	0.24	+0.4
1,630,679	+		LRK54_RS07580	0.24	-0.9
1,630,679	+		LRK54_RS07580	0.24	+0.6
1,630,679	+		LRK54_RS07580	0.24	+0.6
1,630,679	+		LRK54_RS07580	0.24	-0.3
1,630,679	+		LRK54_RS07580	0.24	+0.5
1,630,680	-		LRK54_RS07580	0.24	-0.3
1,630,680	-		LRK54_RS07580	0.24	-0.3
1,630,680	-		LRK54_RS07580	0.24	-0.2
1,630,680	-		LRK54_RS07580	0.24	+0.1
1,630,680	-		LRK54_RS07580	0.24	-0.7
1,630,680	-		LRK54_RS07580	0.24	-0.8
1,630,680	-		LRK54_RS07580	0.24	-0.1
1,630,680	-		LRK54_RS07580	0.24	+1.5
1,630,740	-		LRK54_RS07580	0.36	-0.1
1,631,089	+				+1.1
1,631,089	+				-1.5
1,631,089	+				+0.6
1,631,090	-				+0.8
1,631,131	+				-0.2
1,631,132	-				-0.6
1,631,132	-				-0.0
1,631,494	+		LRK54_RS07585	0.28	-0.2
1,631,494	+		LRK54_RS07585	0.28	-0.6
1,631,494	+		LRK54_RS07585	0.28	-1.3
1,631,494	+		LRK54_RS07585	0.28	+0.1
1,631,494	+		LRK54_RS07585	0.28	+0.7
1,631,494	+		LRK54_RS07585	0.28	-0.3
1,631,494	+		LRK54_RS07585	0.28	+3.1
1,631,494	+		LRK54_RS07585	0.28	+0.2
1,631,494	+		LRK54_RS07585	0.28	-1.1
1,631,494	+		LRK54_RS07585	0.28	+0.1
1,631,494	+		LRK54_RS07585	0.28	+0.4
1,631,494	+		LRK54_RS07585	0.28	-1.0
1,631,494	+		LRK54_RS07585	0.28	-0.1
1,631,494	+		LRK54_RS07585	0.28	-1.1
1,631,494	+		LRK54_RS07585	0.28	+0.5
1,631,495	-		LRK54_RS07585	0.28	+0.7
1,631,495	-		LRK54_RS07585	0.28	+1.3
1,631,495	-		LRK54_RS07585	0.28	+0.3
1,631,495	-		LRK54_RS07585	0.28	-0.2
1,631,495	-		LRK54_RS07585	0.28	-1.5
1,631,495	-		LRK54_RS07585	0.28	-0.1
1,631,495	-		LRK54_RS07585	0.28	+0.3
1,631,495	-		LRK54_RS07585	0.28	-1.4
1,631,495	-		LRK54_RS07585	0.28	-0.4
1,631,495	-		LRK54_RS07585	0.28	+0.5
1,631,495	-		LRK54_RS07585	0.28	+1.0
1,631,495	-		LRK54_RS07585	0.28	-0.2
1,631,495	-		LRK54_RS07585	0.28	-0.2
1,631,495	-		LRK54_RS07585	0.28	+0.4
1,631,495	-		LRK54_RS07585	0.28	+0.2
1,631,495	-		LRK54_RS07585	0.28	+0.1
1,631,533	+		LRK54_RS07585	0.30	+0.2
1,631,533	+		LRK54_RS07585	0.30	+0.2
1,631,534	-		LRK54_RS07585	0.30	+0.8
1,631,534	-		LRK54_RS07585	0.30	-0.6