Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07255

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
1,556,426	+		LRK54_RS07250	0.40	+0.1
1,556,426	+		LRK54_RS07250	0.40	+0.2
1,556,426	+				-0.8
1,556,426	+		LRK54_RS07250	0.40	-1.6
1,556,426	+		LRK54_RS07250	0.40	+0.1
1,556,426	+		LRK54_RS07250	0.40	+0.2
1,556,426	+		LRK54_RS07250	0.40	+0.4
1,556,426	+		LRK54_RS07250	0.40	-0.7
1,556,426	+		LRK54_RS07250	0.40	+1.3
1,556,426	+		LRK54_RS07250	0.40	-0.1
1,556,426	+		LRK54_RS07250	0.40	+0.3
1,556,427	-		LRK54_RS07250	0.40	-0.1
1,556,427	-		LRK54_RS07250	0.40	+0.4
1,556,427	-		LRK54_RS07250	0.40	-1.2
1,556,427	-		LRK54_RS07250	0.40	+0.0
1,556,427	-		LRK54_RS07250	0.40	+0.0
1,556,427	-		LRK54_RS07250	0.40	-0.5
1,556,427	-		LRK54_RS07250	0.40	-0.7
1,556,489	+		LRK54_RS07250	0.46	+0.1
1,556,489	+		LRK54_RS07250	0.46	-0.2
1,556,489	+		LRK54_RS07250	0.46	+1.1
1,556,489	+		LRK54_RS07250	0.46	+0.2
1,556,489	+		LRK54_RS07250	0.46	+0.7
1,556,489	+		LRK54_RS07250	0.46	+0.7
1,556,489	+		LRK54_RS07250	0.46	+1.5
1,556,489	+		LRK54_RS07250	0.46	+0.2
1,556,489	+		LRK54_RS07250	0.46	-0.1
1,556,489	+		LRK54_RS07250	0.46	-0.2
1,556,489	+		LRK54_RS07250	0.46	-0.6
1,556,489	+		LRK54_RS07250	0.46	+0.3
1,556,489	+		LRK54_RS07250	0.46	+0.8
1,556,489	+		LRK54_RS07250	0.46	+0.0
1,556,489	+		LRK54_RS07250	0.46	+1.0
1,556,489	+		LRK54_RS07250	0.46	+0.6
1,556,489	+		LRK54_RS07250	0.46	-0.3
1,556,490	-		LRK54_RS07250	0.46	-0.7
1,556,490	-		LRK54_RS07250	0.46	-0.2
1,556,490	-		LRK54_RS07250	0.46	-0.0
1,556,490	-		LRK54_RS07250	0.46	-0.1
1,556,490	-		LRK54_RS07250	0.46	-0.3
1,556,490	-		LRK54_RS07250	0.46	-0.2
1,556,490	-		LRK54_RS07250	0.46	+0.6
1,556,490	-		LRK54_RS07250	0.46	-0.2
1,556,490	-		LRK54_RS07250	0.46	+1.2
1,556,490	-		LRK54_RS07250	0.46	+1.3
1,556,490	-		LRK54_RS07250	0.46	+1.8
1,556,490	-		LRK54_RS07250	0.46	+0.4
1,556,490	-		LRK54_RS07250	0.46	+1.4
1,556,490	-		LRK54_RS07250	0.46	-1.2
1,556,490	-		LRK54_RS07250	0.46	+0.7
1,556,490	-		LRK54_RS07250	0.46	-0.6
1,556,490	-		LRK54_RS07250	0.46	-0.5
1,556,490	-		LRK54_RS07250	0.46	-0.8
1,556,490	-		LRK54_RS07250	0.46	-0.2
1,556,490	-		LRK54_RS07250	0.46	+2.1
1,556,490	-		LRK54_RS07250	0.46	-0.1
1,556,490	-		LRK54_RS07250	0.46	-1.0
1,556,684	+		LRK54_RS07250	0.67	-0.7
1,556,684	+		LRK54_RS07250	0.67	+0.3
1,556,684	+		LRK54_RS07250	0.67	+1.4
1,556,684	+		LRK54_RS07250	0.67	-0.4
1,556,684	+		LRK54_RS07250	0.67	-0.1
1,556,684	+		LRK54_RS07250	0.67	-0.4
1,556,684	+		LRK54_RS07250	0.67	-0.1
1,556,684	+		LRK54_RS07250	0.67	+1.5
1,556,684	+		LRK54_RS07250	0.67	+1.2
1,556,684	+		LRK54_RS07250	0.67	+0.1
1,556,684	+		LRK54_RS07250	0.67	-0.1
1,556,684	+		LRK54_RS07250	0.67	+0.1
1,556,684	+		LRK54_RS07250	0.67	-0.3
1,556,684	+		LRK54_RS07250	0.67	-0.6
1,556,684	+		LRK54_RS07250	0.67	+0.5
1,556,684	+		LRK54_RS07250	0.67	-0.9
1,556,684	+		LRK54_RS07250	0.67	+0.2
1,556,685	-		LRK54_RS07250	0.67	+1.5
1,556,685	-		LRK54_RS07250	0.67	+1.5
1,556,685	-		LRK54_RS07250	0.67	-0.5
1,556,685	-		LRK54_RS07250	0.67	+0.4
1,556,685	-		LRK54_RS07250	0.67	-1.9
1,556,685	-		LRK54_RS07250	0.67	+0.4
1,556,685	-		LRK54_RS07250	0.67	+0.1
1,556,685	-		LRK54_RS07250	0.67	+0.6
1,556,685	-		LRK54_RS07250	0.67	-0.6
1,556,685	-		LRK54_RS07250	0.67	+0.5
1,556,685	-		LRK54_RS07250	0.67	+0.4
1,556,685	-		LRK54_RS07250	0.67	-1.4
1,556,685	-		LRK54_RS07250	0.67	+0.2
1,556,685	-		LRK54_RS07250	0.67	+1.2
1,556,685	-		LRK54_RS07250	0.67	+0.2
1,556,685	-		LRK54_RS07250	0.67	-0.5
1,556,685	-		LRK54_RS07250	0.67	+0.2
1,556,685	-		LRK54_RS07250	0.67	-0.3
1,556,882	+		LRK54_RS07250	0.88	-0.5
1,556,882	+		LRK54_RS07250	0.88	-0.9
1,556,882	+		LRK54_RS07250	0.88	+1.3
1,556,882	+		LRK54_RS07250	0.88	+0.4
1,556,883	-		LRK54_RS07250	0.88	+0.2
1,556,883	-		LRK54_RS07250	0.88	-1.1
1,556,883	-		LRK54_RS07250	0.88	+0.6
1,556,883	-		LRK54_RS07250	0.88	-0.2
1,557,051	+				+0.2
1,557,052	-				+0.1
1,557,222	+		LRK54_RS07255	0.28	+0.3
1,557,222	+		LRK54_RS07255	0.28	-0.1
1,557,222	+		LRK54_RS07255	0.28	+1.2
1,557,222	+		LRK54_RS07255	0.28	-0.5
1,557,222	+		LRK54_RS07255	0.28	-0.2
1,557,222	+		LRK54_RS07255	0.28	-0.6
1,557,223	-		LRK54_RS07255	0.28	-0.4
1,557,223	-		LRK54_RS07255	0.28	+0.4
1,557,223	-		LRK54_RS07255	0.28	+0.2
1,557,223	-		LRK54_RS07255	0.28	-0.8
1,557,223	-		LRK54_RS07255	0.28	+0.7
1,557,223	-		LRK54_RS07255	0.28	+0.6
1,557,223	-		LRK54_RS07255	0.28	-0.1
1,557,223	-		LRK54_RS07255	0.28	+0.2
1,557,223	-		LRK54_RS07255	0.28	+1.4
1,557,223	-		LRK54_RS07255	0.28	+0.2
1,557,223	-		LRK54_RS07255	0.28	+0.4
1,557,237	+		LRK54_RS07255	0.29	+2.5
1,557,237	+		LRK54_RS07255	0.29	+0.4
1,557,237	+		LRK54_RS07255	0.29	-0.5
1,557,237	+		LRK54_RS07255	0.29	-0.3
1,557,238	-		LRK54_RS07255	0.30	-0.7
1,557,238	-		LRK54_RS07255	0.30	-0.1
1,557,238	-		LRK54_RS07255	0.30	+1.0
1,557,294	+		LRK54_RS07255	0.37	-0.4
1,557,294	+		LRK54_RS07255	0.37	+0.5
1,557,294	+		LRK54_RS07255	0.37	+1.6
1,557,294	+		LRK54_RS07255	0.37	-0.2
1,557,294	+		LRK54_RS07255	0.37	+0.1
1,557,294	+		LRK54_RS07255	0.37	-0.2
1,557,294	+		LRK54_RS07255	0.37	+1.2
1,557,294	+		LRK54_RS07255	0.37	+2.0
1,557,294	+		LRK54_RS07255	0.37	-0.0
1,557,295	-		LRK54_RS07255	0.37	-0.4
1,557,295	-		LRK54_RS07255	0.37	+0.2
1,557,295	-		LRK54_RS07255	0.37	-0.5
1,557,295	-		LRK54_RS07255	0.37	+2.2
1,557,295	-		LRK54_RS07255	0.37	+1.1
1,557,295	-		LRK54_RS07255	0.37	+0.1
1,557,295	-		LRK54_RS07255	0.37	+0.3
1,557,295	-		LRK54_RS07255	0.37	-1.8
1,557,295	-		LRK54_RS07255	0.37	-0.2
1,557,295	-		LRK54_RS07255	0.37	+0.4
1,557,295	-		LRK54_RS07255	0.37	-0.7
1,557,318	+		LRK54_RS07255	0.40	+0.6
1,557,318	+		LRK54_RS07255	0.40	+0.4
1,557,318	+		LRK54_RS07255	0.40	-0.0
1,557,318	+		LRK54_RS07255	0.40	-0.6
1,557,318	+		LRK54_RS07255	0.40	-0.8
1,557,319	-		LRK54_RS07255	0.40	+0.1
1,557,319	-		LRK54_RS07255	0.40	+0.2
1,557,319	-		LRK54_RS07255	0.40	-0.7
1,557,319	-		LRK54_RS07255	0.40	-0.4
1,557,319	-		LRK54_RS07255	0.40	+1.0
1,557,319	-		LRK54_RS07255	0.40	-0.7
1,557,319	-		LRK54_RS07255	0.40	-1.9
1,557,319	-		LRK54_RS07255	0.40	+2.5
1,557,319	-		LRK54_RS07255	0.40	-0.1
1,557,319	-		LRK54_RS07255	0.40	+3.1
1,557,319	-		LRK54_RS07255	0.40	+0.0
1,557,319	-		LRK54_RS07255	0.40	-0.3
1,557,319	-		LRK54_RS07255	0.40	-1.1
1,557,354	+		LRK54_RS07255	0.44	+0.2
1,557,499	+		LRK54_RS07255	0.63	-0.7
1,557,510	+		LRK54_RS07255	0.64	+0.2
1,557,510	+		LRK54_RS07255	0.64	+0.9
1,557,510	+		LRK54_RS07255	0.64	+0.5
1,557,510	+		LRK54_RS07255	0.64	+0.2
1,557,510	+		LRK54_RS07255	0.64	+0.8
1,557,510	+		LRK54_RS07255	0.64	+0.9
1,557,510	+		LRK54_RS07255	0.64	-0.3
1,557,510	+		LRK54_RS07255	0.64	+0.5
1,557,510	+		LRK54_RS07255	0.64	+0.7
1,557,510	+		LRK54_RS07255	0.64	-2.3
1,557,510	+		LRK54_RS07255	0.64	+0.3
1,557,511	-		LRK54_RS07255	0.64	+0.0
1,557,511	-		LRK54_RS07255	0.64	+1.1
1,557,511	-		LRK54_RS07255	0.64	-0.1
1,557,511	-		LRK54_RS07255	0.64	+0.5
1,557,511	-		LRK54_RS07255	0.64	+0.9
1,557,511	-		LRK54_RS07255	0.64	-0.7
1,557,511	-		LRK54_RS07255	0.64	+1.2
1,557,511	-		LRK54_RS07255	0.64	+0.3
1,557,511	-		LRK54_RS07255	0.64	+0.0
1,557,511	-		LRK54_RS07255	0.64	+1.3
1,557,511	-		LRK54_RS07255	0.64	+0.2
1,557,511	-		LRK54_RS07255	0.64	-0.0
1,557,511	-		LRK54_RS07255	0.64	-1.2
1,557,642	+		LRK54_RS07255	0.81	+0.9
1,557,642	+		LRK54_RS07255	0.81	-0.5
1,557,642	+		LRK54_RS07255	0.81	+0.1
1,557,642	+		LRK54_RS07255	0.81	+2.8
1,557,642	+		LRK54_RS07255	0.81	+0.0
1,557,642	+		LRK54_RS07255	0.81	-0.7
1,557,642	+		LRK54_RS07255	0.81	+1.6
1,557,642	+		LRK54_RS07255	0.81	+1.3
1,557,642	+		LRK54_RS07255	0.81	+0.9
1,557,642	+		LRK54_RS07255	0.81	-0.2
1,557,642	+		LRK54_RS07255	0.81	-0.1
1,557,642	+		LRK54_RS07255	0.81	+1.8
1,557,642	+		LRK54_RS07255	0.81	+0.4
1,557,642	+		LRK54_RS07255	0.81	-0.6
1,557,642	+		LRK54_RS07255	0.81	-1.0
1,557,643	-		LRK54_RS07255	0.81	+0.4
1,557,643	-		LRK54_RS07255	0.81	-0.3
1,557,643	-		LRK54_RS07255	0.81	+1.5
1,557,643	-		LRK54_RS07255	0.81	+0.3
1,557,643	-		LRK54_RS07255	0.81	-0.1
1,557,643	-		LRK54_RS07255	0.81	+1.4
1,557,643	-		LRK54_RS07255	0.81	+0.9
1,557,643	-		LRK54_RS07255	0.81	-0.1
1,557,643	-		LRK54_RS07255	0.81	+0.5
1,557,643	-		LRK54_RS07255	0.81	-0.2
1,557,643	-		LRK54_RS07255	0.81	-0.1
1,557,643	-		LRK54_RS07255	0.81	+0.1
1,557,643	-		LRK54_RS07255	0.81	-1.1
1,557,643	-		LRK54_RS07255	0.81	+0.4
1,557,643	-		LRK54_RS07255	0.81	-0.8
1,557,643	-		LRK54_RS07255	0.81	+0.4
1,557,643	-		LRK54_RS07255	0.81	+0.9
1,557,643	-		LRK54_RS07255	0.81	+0.3
1,557,643	-		LRK54_RS07255	0.81	+0.9
1,557,643	-		LRK54_RS07255	0.81	+0.2
1,557,643	-		LRK54_RS07255	0.81	-0.8
1,557,643	-		LRK54_RS07255	0.81	+0.1
1,557,643	-		LRK54_RS07255	0.81	+1.8
1,557,643	-		LRK54_RS07255	0.81	-0.8
1,557,868	-				-3.0
1,558,057	+				-0.6
1,558,057	+				+0.7
1,558,057	+				-0.2
1,558,057	+				-0.7
1,558,057	+				+0.4
1,558,057	+				+0.0
1,558,057	+				-0.3
1,558,057	+				+0.5
1,558,057	+				-2.0
1,558,057	+				-1.4
1,558,057	+				+0.7
1,558,058	-				-1.6
1,558,058	-				-0.0
1,558,058	-				-0.1
1,558,058	-				-0.2
1,558,058	-				+0.0
1,558,058	-				-0.9
1,558,058	-				-0.6
1,558,058	-				+0.1
1,558,058	-				-0.9
1,558,058	-				+0.1
1,558,319	+		LRK54_RS07260	0.59	-0.1
1,558,319	+		LRK54_RS07260	0.59	+0.8
1,558,319	+		LRK54_RS07260	0.59	+0.4
1,558,319	+		LRK54_RS07260	0.59	+0.9
1,558,319	+		LRK54_RS07260	0.59	+0.1
1,558,319	+		LRK54_RS07260	0.59	+0.3
1,558,319	+		LRK54_RS07260	0.59	+0.1
1,558,319	+		LRK54_RS07260	0.59	+1.9
1,558,319	+		LRK54_RS07260	0.59	+0.2
1,558,319	+		LRK54_RS07260	0.59	-0.9
1,558,319	+		LRK54_RS07260	0.59	-0.3
1,558,320	-		LRK54_RS07260	0.59	+0.8
1,558,320	-		LRK54_RS07260	0.59	-0.9
1,558,320	-		LRK54_RS07260	0.59	-0.3
1,558,320	-		LRK54_RS07260	0.59	+1.1
1,558,320	-		LRK54_RS07260	0.59	+0.3
1,558,320	-		LRK54_RS07260	0.59	+0.1
1,558,320	-		LRK54_RS07260	0.59	+0.6
1,558,320	-		LRK54_RS07260	0.59	-0.2
1,558,320	-		LRK54_RS07260	0.59	-0.5
1,558,640	+				-0.4
1,558,640	+				+0.1
1,558,640	+				-1.5
1,558,640	+				-0.3
1,558,640	+				+0.9
1,558,640	+				-0.2
1,558,640	+				+2.5
1,558,640	+				-0.5
1,558,640	+				+0.0
1,558,640	+				-2.1
1,558,640	+				+0.6
1,558,640	+				-0.3
1,558,640	+				+0.5
1,558,640	+				+0.1
1,558,640	+				+0.8
1,558,640	+				-0.5
1,558,640	+				-0.8
1,558,640	+				-0.2
1,558,640	+				+0.2
1,558,640	+				-0.5
1,558,640	+				-0.2
1,558,641	-				-0.1
1,558,641	-				+0.1
1,558,641	-				+0.5
1,558,641	-				-0.3
1,558,641	-				+0.8
1,558,641	-				+0.4
1,558,641	-				+0.1
1,558,641	-				-0.1
1,558,641	-				+2.5
1,558,641	-				-1.9
1,558,641	-				-1.0
1,558,641	-				+0.0
1,558,641	-				-1.1
1,558,641	-				+1.2
1,558,641	-				+1.5
1,558,641	-				-0.6
1,558,641	-				+0.2
1,558,641	-				+0.5
1,558,641	-				-0.2
1,558,641	-				-0.0
1,558,641	-				-2.5
1,558,641	-				-0.2
1,558,641	-				+0.2
1,558,641	-				+0.8
1,558,641	-				-0.0
1,558,641	-				+0.8
1,558,641	-				-1.1
1,558,641	-				+0.6
1,558,661	+				-1.8
1,558,661	+				-0.8
1,558,661	+				+0.2
1,558,661	+				-0.7
1,558,661	+				+1.1
1,558,661	+				-0.4
1,558,661	+				-0.8
1,558,661	+				-0.8
1,558,662	-				-1.5
1,558,662	-				-0.7
1,558,662	-				-1.6
1,558,662	-				-1.6
1,558,662	-				-1.1
1,558,662	-				+0.6
1,558,662	-				-0.0
1,558,662	-				+0.2