Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06360

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
1,358,328	-				-0.3
1,358,328	-				+0.8
1,358,383	-		LRK54_RS06355	0.13	-0.8
1,358,419	-		LRK54_RS06355	0.22	-0.3
1,358,512	+		LRK54_RS06355	0.43	+1.1
1,358,512	+		LRK54_RS06355	0.43	-1.1
1,358,512	+		LRK54_RS06355	0.43	+0.9
1,358,513	-		LRK54_RS06355	0.44	-0.3
1,358,532	+		LRK54_RS06355	0.48	+1.0
1,358,574	+		LRK54_RS06355	0.58	+0.2
1,358,574	+		LRK54_RS06355	0.58	-0.3
1,358,574	+		LRK54_RS06355	0.58	-1.8
1,358,574	+		LRK54_RS06355	0.58	+0.4
1,358,574	+		LRK54_RS06355	0.58	+0.5
1,358,574	+		LRK54_RS06355	0.58	-0.8
1,358,574	+		LRK54_RS06355	0.58	-0.1
1,358,574	+		LRK54_RS06355	0.58	-0.1
1,358,574	+		LRK54_RS06355	0.58	-1.2
1,358,574	+		LRK54_RS06355	0.58	-0.2
1,358,575	-		LRK54_RS06355	0.58	+1.0
1,358,575	-		LRK54_RS06355	0.58	+0.5
1,358,575	-		LRK54_RS06355	0.58	-0.4
1,358,575	-		LRK54_RS06355	0.58	-1.8
1,358,575	-		LRK54_RS06355	0.58	+0.1
1,358,575	-		LRK54_RS06355	0.58	-2.3
1,358,575	-		LRK54_RS06355	0.58	-0.4
1,358,575	-		LRK54_RS06355	0.58	+0.5
1,358,575	-		LRK54_RS06355	0.58	+0.8
1,358,575	-		LRK54_RS06355	0.58	-1.8
1,358,575	-		LRK54_RS06355	0.58	-0.3
1,358,575	-		LRK54_RS06355	0.58	+1.2
1,358,576	+		LRK54_RS06355	0.58	+0.9
1,358,576	+		LRK54_RS06355	0.58	-0.1
1,358,577	-		LRK54_RS06355	0.59	+0.1
1,358,577	-		LRK54_RS06355	0.59	+0.3
1,358,590	-		LRK54_RS06355	0.62	-0.8
1,358,590	-		LRK54_RS06355	0.62	-0.3
1,358,590	-		LRK54_RS06355	0.62	-0.4
1,358,621	+		LRK54_RS06355	0.69	-2.3
1,358,621	+		LRK54_RS06355	0.69	-2.3
1,358,622	-		LRK54_RS06355	0.69	-0.2
1,358,622	-		LRK54_RS06355	0.69	-1.2
1,358,622	-		LRK54_RS06355	0.69	+0.3
1,358,622	-		LRK54_RS06355	0.69	-0.9
1,358,622	-		LRK54_RS06355	0.69	+0.9
1,358,670	+		LRK54_RS06355	0.80	+0.5
1,358,670	+		LRK54_RS06355	0.80	-0.8
1,358,671	-		LRK54_RS06355	0.80	+0.2
1,358,773	-				+0.7
1,358,773	-				-1.6
1,358,799	+				+0.2
1,358,815	+				-0.6
1,358,816	-				+0.8
1,358,816	-				-0.5
1,358,816	-				-1.0
1,358,816	-				+0.1
1,358,816	-				+0.9
1,358,816	-				-0.3
1,358,845	+				-0.9
1,358,846	-				-1.6
1,358,846	-				+0.2
1,358,889	+				-0.8
1,358,890	-				-0.1
1,358,890	-				-0.8
1,358,890	-				-0.5
1,358,941	+				-1.6
1,358,941	+				-1.0
1,358,942	-				-1.0
1,358,942	-				-1.4
1,358,942	-				+0.3
1,358,942	-				-0.7
1,358,942	-				-0.4
1,358,942	-				+0.5
1,358,942	-				-0.4
1,358,942	-				+0.1
1,358,999	+				+0.9
1,359,020	+				+0.1
1,359,020	+				+0.7
1,359,020	+				+0.2
1,359,021	-				+0.8
1,359,021	-				-0.5
1,359,021	-				-0.2
1,359,021	-				+0.5
1,359,021	-				-0.9
1,359,021	-				-0.0
1,359,081	+				-0.4
1,359,082	-				-0.3
1,359,082	-				-0.6
1,359,082	-				+0.8
1,359,099	+				+0.8
1,359,100	-				-1.3
1,359,100	-				+0.4
1,359,112	-				+0.2
1,359,163	-				+0.7
1,359,163	-				-0.1
1,359,198	+				-0.7
1,359,198	+				+0.2
1,359,198	+				+2.0
1,359,198	+				-1.7
1,359,198	+				-0.9
1,359,198	+				+0.4
1,359,199	-				+0.5
1,359,199	-				-0.1
1,359,199	-				+0.7
1,359,199	-				-0.7
1,359,257	+		LRK54_RS06360	0.19	-0.6
1,359,257	+		LRK54_RS06360	0.19	-0.7
1,359,258	-		LRK54_RS06360	0.19	+0.2
1,359,258	-		LRK54_RS06360	0.19	+0.7
1,359,258	-		LRK54_RS06360	0.19	+0.2
1,359,258	-		LRK54_RS06360	0.19	+0.4
1,359,279	+		LRK54_RS06360	0.23	-0.1
1,359,369	+		LRK54_RS06360	0.37	+0.2
1,359,369	+		LRK54_RS06360	0.37	+0.9
1,359,369	+		LRK54_RS06360	0.37	-0.1
1,359,369	+		LRK54_RS06360	0.37	-1.3
1,359,370	-		LRK54_RS06360	0.37	-0.2
1,359,370	-		LRK54_RS06360	0.37	-1.0
1,359,370	-		LRK54_RS06360	0.37	+1.2
1,359,370	-		LRK54_RS06360	0.37	+0.7
1,359,574	+		LRK54_RS06360	0.70	+0.0
1,359,684	+		LRK54_RS06360	0.88	-0.7
1,359,685	-		LRK54_RS06360	0.88	+0.1
1,359,685	-		LRK54_RS06360	0.88	+1.0
1,359,685	-		LRK54_RS06360	0.88	+1.1
1,359,685	-		LRK54_RS06360	0.88	-0.3
1,359,685	-		LRK54_RS06360	0.88	-0.6
1,359,747	+				+1.2
1,359,747	+				+0.7
1,359,747	+				-0.5
1,359,747	+				-0.3
1,359,747	+				+1.5
1,359,747	+				-0.3
1,359,747	+				-0.1
1,359,748	-				+0.6
1,359,756	+				+0.6
1,359,756	+				+1.2
1,359,756	+				+0.2
1,359,756	+				-0.3
1,359,756	+				+0.2
1,359,756	+				+1.0
1,359,756	+				-1.8
1,359,756	+				+0.4
1,359,756	+				+0.3
1,359,756	+				-0.1
1,359,756	+				+0.6
1,359,757	-				-0.3
1,359,757	-				-0.2
1,359,757	-				-0.1
1,359,757	-				+0.1
1,359,757	-				-0.2
1,359,757	-				-0.9
1,359,757	-				-1.8
1,359,977	+		LRK54_RS06365	0.10	+0.9
1,359,977	+		LRK54_RS06365	0.10	-0.2
1,360,049	-		LRK54_RS06365	0.27	+0.2
1,360,134	+		LRK54_RS06365	0.48	-1.2
1,360,134	+		LRK54_RS06365	0.48	-0.2
1,360,134	+		LRK54_RS06365	0.48	-0.7
1,360,134	+		LRK54_RS06365	0.48	+0.3
1,360,134	+		LRK54_RS06365	0.48	-0.2
1,360,134	+		LRK54_RS06365	0.48	-1.0
1,360,134	+		LRK54_RS06365	0.48	+0.5
1,360,134	+		LRK54_RS06365	0.48	-0.9
1,360,134	+		LRK54_RS06365	0.48	+0.5
1,360,134	+		LRK54_RS06365	0.48	-0.7
1,360,135	-		LRK54_RS06365	0.48	+0.9
1,360,135	-		LRK54_RS06365	0.48	+0.9
1,360,135	-		LRK54_RS06365	0.48	+0.3
1,360,135	-		LRK54_RS06365	0.48	-0.8
1,360,135	-		LRK54_RS06365	0.48	-0.1
1,360,148	+		LRK54_RS06365	0.51	-1.3
1,360,180	+		LRK54_RS06365	0.59	-0.7
1,360,181	-		LRK54_RS06365	0.59	+1.9
1,360,181	-		LRK54_RS06365	0.59	+0.1
1,360,191	+		LRK54_RS06365	0.61	-0.9
1,360,191	+		LRK54_RS06365	0.61	-0.1
1,360,192	-		LRK54_RS06365	0.62	+0.9
1,360,343	-				-0.1
1,360,390	-				-0.4
1,360,401	+				-0.9
1,360,402	-				+0.2
1,360,413	+				-1.1
1,360,413	+				-0.1
1,360,414	-				-0.1
1,360,451	+				-1.5
1,360,452	-				+1.3
1,360,496	+				-0.3
1,360,496	+				+0.4
1,360,497	-				-0.1
1,360,497	-				-1.3
1,360,516	+				-0.3
1,360,516	+				-0.4
1,360,517	-				-0.7
1,360,517	-				+0.5
1,360,517	-				-1.0
1,360,517	-				+2.5
1,360,649	+				+0.3
1,360,649	+				+1.3
1,360,649	+				+0.3
1,360,650	-				+1.7
1,360,650	-				+0.3
1,360,650	-				-1.0
1,360,676	+				+1.6
1,360,729	+				-1.0
1,360,730	-				+0.5
1,360,730	-				-0.6