Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06175

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
1,326,589	-				-1.2
1,326,589	-				+0.2
1,326,635	-				-0.1
1,326,639	+				-0.7
1,326,639	+				-0.8
1,326,639	+				-1.0
1,326,639	+				+0.0
1,326,639	+				+0.0
1,326,640	-				-0.6
1,326,640	-				-0.7
1,326,640	-				-0.7
1,326,640	-				-0.1
1,326,640	-				-0.6
1,326,671	-				+1.0
1,326,671	-				+1.2
1,326,762	+		LRK54_RS06170	0.14	+0.2
1,326,762	+		LRK54_RS06170	0.14	-0.7
1,326,762	+		LRK54_RS06170	0.14	+1.0
1,326,763	-		LRK54_RS06170	0.14	-0.0
1,327,041	+		LRK54_RS06170	0.49	+0.3
1,327,042	-		LRK54_RS06170	0.50	+0.7
1,327,042	-		LRK54_RS06170	0.50	-0.8
1,327,042	-		LRK54_RS06170	0.50	+1.5
1,327,203	+		LRK54_RS06170	0.70	-0.4
1,327,203	+		LRK54_RS06170	0.70	-0.2
1,327,203	+		LRK54_RS06170	0.70	+1.7
1,327,203	+		LRK54_RS06170	0.70	+0.9
1,327,204	-		LRK54_RS06170	0.70	-2.0
1,327,204	-		LRK54_RS06170	0.70	+0.8
1,327,336	-		LRK54_RS06170	0.87	-1.2
1,327,336	-		LRK54_RS06170	0.87	-1.3
1,327,336	-		LRK54_RS06170	0.87	-0.0
1,327,336	-		LRK54_RS06170	0.87	+1.5
1,327,337	+		LRK54_RS06170	0.87	+0.3
1,327,338	-		LRK54_RS06170	0.87	-1.0
1,327,338	-		LRK54_RS06170	0.87	+0.9
1,327,380	+				+0.0
1,327,380	+				-1.8
1,327,380	+				-0.7
1,327,499	+		LRK54_RS06175	0.13	+0.3
1,327,499	+		LRK54_RS06175	0.13	-0.1
1,327,499	+		LRK54_RS06175	0.13	+0.7
1,327,499	+		LRK54_RS06175	0.13	+1.5
1,327,499	+		LRK54_RS06175	0.13	-1.1
1,327,499	+		LRK54_RS06175	0.13	+0.5
1,327,499	+		LRK54_RS06175	0.13	+0.3
1,327,499	+		LRK54_RS06175	0.13	-0.0
1,327,499	+		LRK54_RS06175	0.13	+1.0
1,327,499	+		LRK54_RS06175	0.13	+0.1
1,327,499	+		LRK54_RS06175	0.13	-0.4
1,327,499	+		LRK54_RS06175	0.13	-0.3
1,327,499	+		LRK54_RS06175	0.13	-0.4
1,327,499	+		LRK54_RS06175	0.13	+1.3
1,327,499	+		LRK54_RS06175	0.13	+0.6
1,327,499	+		LRK54_RS06175	0.13	+0.3
1,327,499	+		LRK54_RS06175	0.13	-0.9
1,327,499	+		LRK54_RS06175	0.13	+0.3
1,327,500	-		LRK54_RS06175	0.14	-0.5
1,327,500	-		LRK54_RS06175	0.14	-0.1
1,327,500	-		LRK54_RS06175	0.14	+1.1
1,327,500	-		LRK54_RS06175	0.14	-0.3
1,327,500	-		LRK54_RS06175	0.14	+0.2
1,327,500	-		LRK54_RS06175	0.14	+2.3
1,327,500	-		LRK54_RS06175	0.14	-0.3
1,327,500	-		LRK54_RS06175	0.14	+1.1
1,327,500	-		LRK54_RS06175	0.14	-0.1
1,327,500	-		LRK54_RS06175	0.14	+3.2
1,327,500	-		LRK54_RS06175	0.14	+0.5
1,327,500	-		LRK54_RS06175	0.14	+0.4
1,327,500	-		LRK54_RS06175	0.14	-0.5
1,327,500	-		LRK54_RS06175	0.14	-0.8
1,327,500	-		LRK54_RS06175	0.14	+0.4
1,327,500	-		LRK54_RS06175	0.14	-0.3
1,327,500	-		LRK54_RS06175	0.14	-0.0
1,327,613	+		LRK54_RS06175	0.40	+0.4
1,327,613	+		LRK54_RS06175	0.40	-0.6
1,327,613	+		LRK54_RS06175	0.40	-0.1
1,327,613	+		LRK54_RS06175	0.40	+0.0
1,327,613	+		LRK54_RS06175	0.40	+2.2
1,327,614	-		LRK54_RS06175	0.40	+0.3
1,327,614	-		LRK54_RS06175	0.40	+1.2
1,327,614	-		LRK54_RS06175	0.40	+0.5
1,327,622	+		LRK54_RS06175	0.42	-0.8
1,327,622	+		LRK54_RS06175	0.42	-0.5
1,327,623	-		LRK54_RS06175	0.42	+0.1
1,327,623	-		LRK54_RS06175	0.42	+1.0
1,327,623	-		LRK54_RS06175	0.42	-0.1
1,327,623	-		LRK54_RS06175	0.42	-0.2
1,327,623	-		LRK54_RS06175	0.42	+0.0
1,327,820	+		LRK54_RS06175	0.87	+0.2
1,327,820	+		LRK54_RS06175	0.87	-0.1
1,327,820	+		LRK54_RS06175	0.87	-0.2
1,327,820	+		LRK54_RS06175	0.87	-0.1
1,327,820	+		LRK54_RS06175	0.87	+1.5
1,327,821	-		LRK54_RS06175	0.87	+0.7
1,327,821	-		LRK54_RS06175	0.87	+0.2
1,327,821	-		LRK54_RS06175	0.87	-0.2
1,327,821	-		LRK54_RS06175	0.87	-0.3
1,327,821	-		LRK54_RS06175	0.87	+1.5
1,327,821	-		LRK54_RS06175	0.87	-0.3
1,327,866	+				-1.8
1,327,866	+				-0.2
1,327,866	+				-1.0
1,327,867	-				-0.8
1,327,867	-				-1.1
1,327,867	-				+0.2
1,327,867	-				-0.1
1,327,900	-				-0.2
1,327,900	-				-0.1
1,328,169	+		LRK54_RS06180	0.36	-0.1
1,328,169	+		LRK54_RS06180	0.36	+0.1
1,328,169	+		LRK54_RS06180	0.36	-1.6
1,328,169	+		LRK54_RS06180	0.36	+0.1
1,328,170	-		LRK54_RS06180	0.36	+0.0
1,328,170	-		LRK54_RS06180	0.36	-0.6
1,328,301	+		LRK54_RS06180	0.56	+0.7
1,328,301	+		LRK54_RS06180	0.56	+1.6
1,328,301	+		LRK54_RS06180	0.56	-0.2
1,328,301	+		LRK54_RS06180	0.56	+1.3
1,328,301	+		LRK54_RS06180	0.56	-0.8
1,328,301	+		LRK54_RS06180	0.56	+1.5
1,328,302	-		LRK54_RS06180	0.57	+0.0
1,328,302	-		LRK54_RS06180	0.57	-0.0
1,328,302	-		LRK54_RS06180	0.57	-1.0
1,328,302	-		LRK54_RS06180	0.57	+0.7
1,328,419	+		LRK54_RS06180	0.74	-1.3
1,328,419	+		LRK54_RS06180	0.74	-0.0
1,328,419	+		LRK54_RS06180	0.74	-0.5
1,328,419	+		LRK54_RS06180	0.74	+0.1
1,328,419	+		LRK54_RS06180	0.74	+1.6
1,328,419	+		LRK54_RS06180	0.74	+0.7
1,328,419	+		LRK54_RS06180	0.74	+1.4
1,328,419	+		LRK54_RS06180	0.74	+0.6
1,328,419	+		LRK54_RS06180	0.74	-0.2
1,328,419	+		LRK54_RS06180	0.74	+0.3
1,328,419	+		LRK54_RS06180	0.74	+0.5
1,328,419	+		LRK54_RS06180	0.74	+0.1
1,328,419	+		LRK54_RS06180	0.74	+0.2
1,328,419	+		LRK54_RS06180	0.74	+0.9
1,328,419	+		LRK54_RS06180	0.74	+0.3
1,328,419	+		LRK54_RS06180	0.74	+1.9
1,328,419	+		LRK54_RS06180	0.74	+0.2
1,328,419	+		LRK54_RS06180	0.74	-0.4
1,328,419	+		LRK54_RS06180	0.74	-0.8
1,328,419	+		LRK54_RS06180	0.74	+0.5
1,328,419	+		LRK54_RS06180	0.74	+0.1
1,328,419	+		LRK54_RS06180	0.74	+0.2
1,328,419	+		LRK54_RS06180	0.74	-0.5
1,328,419	+		LRK54_RS06180	0.74	-0.1
1,328,419	+		LRK54_RS06180	0.74	+0.8
1,328,420	-		LRK54_RS06180	0.75	+0.3
1,328,420	-		LRK54_RS06180	0.75	-0.1
1,328,420	-		LRK54_RS06180	0.75	-0.6
1,328,420	-		LRK54_RS06180	0.75	-1.2
1,328,420	-		LRK54_RS06180	0.75	-0.6
1,328,420	-		LRK54_RS06180	0.75	+0.3
1,328,420	-		LRK54_RS06180	0.75	+0.3
1,328,420	-		LRK54_RS06180	0.75	+0.1
1,328,420	-		LRK54_RS06180	0.75	-1.2
1,328,420	-		LRK54_RS06180	0.75	+0.7
1,328,420	-		LRK54_RS06180	0.75	-0.5
1,328,420	-		LRK54_RS06180	0.75	-0.2
1,328,420	-		LRK54_RS06180	0.75	-0.4
1,328,420	-		LRK54_RS06180	0.75	-0.7
1,328,420	-		LRK54_RS06180	0.75	-1.3
1,328,420	-		LRK54_RS06180	0.75	-0.0
1,328,420	-		LRK54_RS06180	0.75	+1.7
1,328,420	-		LRK54_RS06180	0.75	-0.9
1,328,420	-		LRK54_RS06180	0.75	-0.1
1,328,420	-		LRK54_RS06180	0.75	-0.1
1,328,692	+		LRK54_RS06185	0.54	+0.3
1,328,692	+		LRK54_RS06185	0.54	-0.3
1,328,692	+		LRK54_RS06185	0.54	-1.5
1,328,692	+		LRK54_RS06185	0.54	-0.0
1,328,692	+		LRK54_RS06185	0.54	-1.2
1,328,692	+		LRK54_RS06185	0.54	-1.3
1,328,692	+		LRK54_RS06185	0.54	-0.1
1,328,693	-		LRK54_RS06185	0.55	-0.6
1,328,693	-		LRK54_RS06185	0.55	-1.6
1,328,693	-		LRK54_RS06185	0.55	-0.1
1,328,693	-		LRK54_RS06185	0.55	-1.2
1,328,693	-		LRK54_RS06185	0.55	-2.7
1,328,724	+		LRK54_RS06185	0.71	-0.9
1,328,724	+		LRK54_RS06185	0.71	+2.8
1,328,724	+		LRK54_RS06185	0.71	-1.0
1,328,724	+		LRK54_RS06185	0.71	+2.3
1,328,724	+		LRK54_RS06185	0.71	-0.1
1,328,724	+		LRK54_RS06185	0.71	-0.4
1,328,725	-		LRK54_RS06185	0.72	+0.6
1,328,725	-		LRK54_RS06185	0.72	-0.8
1,328,725	-		LRK54_RS06185	0.72	+1.5
1,328,725	-		LRK54_RS06185	0.72	-0.3
1,328,746	+		LRK54_RS06185	0.83	+0.0
1,328,747	-		LRK54_RS06185	0.84	-0.5
1,328,808	+				+1.1
1,328,808	+				+0.9
1,328,808	+				+0.5
1,328,808	+				+0.3
1,328,808	+				+0.9
1,328,808	+				-0.6
1,328,808	+				+0.1
1,328,808	+				+0.2
1,328,809	-				-0.4
1,328,809	-				-0.1
1,328,809	-				+1.5
1,328,809	-				+1.3
1,328,809	-				-0.0
1,328,809	-				-0.5
1,328,809	-				-0.3
1,328,809	-				-0.8
1,328,809	-				+0.8
1,328,809	-				+0.9
1,328,809	-				-0.5
1,328,809	-				-1.3
1,328,809	-				-0.6
1,328,809	-				-0.3
1,328,809	-				-0.7
1,328,809	-				+0.2