Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05060

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
1,083,347	+		LRK54_RS05055	0.26	-1.4
1,083,347	+		LRK54_RS05055	0.26	-0.4
1,083,348	-		LRK54_RS05055	0.27	+0.0
1,083,419	+		LRK54_RS05055	0.32	-0.2
1,083,419	+		LRK54_RS05055	0.32	-1.8
1,083,419	+		LRK54_RS05055	0.32	+0.2
1,083,419	+		LRK54_RS05055	0.32	+1.4
1,083,419	+		LRK54_RS05055	0.32	-1.3
1,083,419	+		LRK54_RS05055	0.32	-0.2
1,083,419	+		LRK54_RS05055	0.32	+0.1
1,083,419	+		LRK54_RS05055	0.32	+0.7
1,083,419	+		LRK54_RS05055	0.32	-0.4
1,083,420	-		LRK54_RS05055	0.32	+0.4
1,083,420	-		LRK54_RS05055	0.32	+0.0
1,083,420	-		LRK54_RS05055	0.32	+2.1
1,083,420	-		LRK54_RS05055	0.32	+0.4
1,083,593	+		LRK54_RS05055	0.45	+0.1
1,083,593	+		LRK54_RS05055	0.45	+0.7
1,083,593	+		LRK54_RS05055	0.45	-1.7
1,083,593	+		LRK54_RS05055	0.45	+0.0
1,083,593	+		LRK54_RS05055	0.45	+0.9
1,083,594	-		LRK54_RS05055	0.45	-0.5
1,083,594	-		LRK54_RS05055	0.45	-0.1
1,083,594	-		LRK54_RS05055	0.45	+0.4
1,083,594	-		LRK54_RS05055	0.45	+0.4
1,083,594	-		LRK54_RS05055	0.45	-0.0
1,083,594	-		LRK54_RS05055	0.45	-0.8
1,083,629	+		LRK54_RS05055	0.48	-0.3
1,083,629	+		LRK54_RS05055	0.48	-1.0
1,083,629	+		LRK54_RS05055	0.48	+0.6
1,083,629	+		LRK54_RS05055	0.48	-0.9
1,083,629	+		LRK54_RS05055	0.48	-0.0
1,083,629	+		LRK54_RS05055	0.48	-0.4
1,083,629	+		LRK54_RS05055	0.48	-0.3
1,083,629	+		LRK54_RS05055	0.48	+0.0
1,083,629	+		LRK54_RS05055	0.48	-0.9
1,083,629	+		LRK54_RS05055	0.48	-0.8
1,083,629	+		LRK54_RS05055	0.48	-0.4
1,083,630	-		LRK54_RS05055	0.48	-0.3
1,083,630	-		LRK54_RS05055	0.48	-0.2
1,083,630	-		LRK54_RS05055	0.48	-0.2
1,083,630	-		LRK54_RS05055	0.48	+0.2
1,083,630	-		LRK54_RS05055	0.48	+0.8
1,083,630	-		LRK54_RS05055	0.48	+0.2
1,083,630	-		LRK54_RS05055	0.48	+0.2
1,083,630	-		LRK54_RS05055	0.48	+0.0
1,083,630	-		LRK54_RS05055	0.48	+0.0
1,083,630	-		LRK54_RS05055	0.48	+0.3
1,083,630	-		LRK54_RS05055	0.48	+0.3
1,083,630	-		LRK54_RS05055	0.48	+1.6
1,083,630	-		LRK54_RS05055	0.48	+0.1
1,083,630	-		LRK54_RS05055	0.48	-0.8
1,083,630	-		LRK54_RS05055	0.48	+0.1
1,083,630	-		LRK54_RS05055	0.48	-1.6
1,083,630	-		LRK54_RS05055	0.48	-1.6
1,083,777	+		LRK54_RS05055	0.59	-0.3
1,083,778	-		LRK54_RS05055	0.59	+0.4
1,083,778	-		LRK54_RS05055	0.59	+0.4
1,083,778	-		LRK54_RS05055	0.59	+0.3
1,083,794	+		LRK54_RS05055	0.60	+0.2
1,083,794	+		LRK54_RS05055	0.60	+0.2
1,083,794	+		LRK54_RS05055	0.60	+0.1
1,083,794	+		LRK54_RS05055	0.60	+0.2
1,083,794	+		LRK54_RS05055	0.60	-0.3
1,083,794	+		LRK54_RS05055	0.60	-0.2
1,083,795	-		LRK54_RS05055	0.60	+0.3
1,083,795	-		LRK54_RS05055	0.60	+0.6
1,083,795	-		LRK54_RS05055	0.60	+0.1
1,083,795	-		LRK54_RS05055	0.60	+0.7
1,083,795	-		LRK54_RS05055	0.60	-0.1
1,083,795	-		LRK54_RS05055	0.60	+0.4
1,083,836	+		LRK54_RS05055	0.63	+0.1
1,083,836	+		LRK54_RS05055	0.63	-1.2
1,083,836	+		LRK54_RS05055	0.63	-0.6
1,083,836	+		LRK54_RS05055	0.63	-1.6
1,083,836	+		LRK54_RS05055	0.63	-0.1
1,083,836	+		LRK54_RS05055	0.63	+0.5
1,083,836	+		LRK54_RS05055	0.63	+0.8
1,083,836	+		LRK54_RS05055	0.63	+0.6
1,083,836	+		LRK54_RS05055	0.63	-0.4
1,083,836	+		LRK54_RS05055	0.63	+0.0
1,083,836	+		LRK54_RS05055	0.63	+0.2
1,083,836	+		LRK54_RS05055	0.63	+0.9
1,083,836	+		LRK54_RS05055	0.63	-0.3
1,083,836	+		LRK54_RS05055	0.63	+0.2
1,083,836	+		LRK54_RS05055	0.63	+0.4
1,083,836	+		LRK54_RS05055	0.63	+1.2
1,083,836	+		LRK54_RS05055	0.63	-0.2
1,083,836	+		LRK54_RS05055	0.63	+0.4
1,083,836	+		LRK54_RS05055	0.63	-0.0
1,083,836	+		LRK54_RS05055	0.63	-1.0
1,083,837	-		LRK54_RS05055	0.63	+0.1
1,083,837	-		LRK54_RS05055	0.63	-0.9
1,083,837	-		LRK54_RS05055	0.63	+0.9
1,083,837	-		LRK54_RS05055	0.63	+0.2
1,083,837	-		LRK54_RS05055	0.63	+0.6
1,083,837	-		LRK54_RS05055	0.63	+0.2
1,083,837	-		LRK54_RS05055	0.63	-0.0
1,083,837	-		LRK54_RS05055	0.63	-0.3
1,083,837	-		LRK54_RS05055	0.63	+0.6
1,083,837	-		LRK54_RS05055	0.63	+0.8
1,083,837	-		LRK54_RS05055	0.63	+1.0
1,083,837	-		LRK54_RS05055	0.63	-0.6
1,083,837	-		LRK54_RS05055	0.63	-0.3
1,083,837	-		LRK54_RS05055	0.63	+0.3
1,083,837	-		LRK54_RS05055	0.63	+0.6
1,083,837	-		LRK54_RS05055	0.63	-0.8
1,083,837	-		LRK54_RS05055	0.63	-0.5
1,083,887	+		LRK54_RS05055	0.67	-0.1
1,083,887	+		LRK54_RS05055	0.67	-0.2
1,083,887	+		LRK54_RS05055	0.67	-0.6
1,083,887	+		LRK54_RS05055	0.67	-0.2
1,083,887	+		LRK54_RS05055	0.67	+0.2
1,083,887	+		LRK54_RS05055	0.67	+1.0
1,083,887	+		LRK54_RS05055	0.67	-0.3
1,083,887	+		LRK54_RS05055	0.67	-0.2
1,083,887	+		LRK54_RS05055	0.67	-0.1
1,083,887	+		LRK54_RS05055	0.67	+1.0
1,083,887	+		LRK54_RS05055	0.67	+0.8
1,083,887	+		LRK54_RS05055	0.67	+1.2
1,083,887	+		LRK54_RS05055	0.67	+0.3
1,083,887	+		LRK54_RS05055	0.67	-1.2
1,083,887	+		LRK54_RS05055	0.67	+0.2
1,083,887	+		LRK54_RS05055	0.67	+0.5
1,083,887	+		LRK54_RS05055	0.67	-1.4
1,083,888	-		LRK54_RS05055	0.67	+0.6
1,083,888	-		LRK54_RS05055	0.67	+0.8
1,083,888	-		LRK54_RS05055	0.67	-0.5
1,083,888	-		LRK54_RS05055	0.67	+0.7
1,083,888	-		LRK54_RS05055	0.67	-0.4
1,083,888	-		LRK54_RS05055	0.67	+0.0
1,083,888	-		LRK54_RS05055	0.67	+0.8
1,083,888	-		LRK54_RS05055	0.67	+0.1
1,083,888	-		LRK54_RS05055	0.67	+1.2
1,083,888	-		LRK54_RS05055	0.67	+3.0
1,083,899	+		LRK54_RS05055	0.68	+1.5
1,083,900	-		LRK54_RS05055	0.68	+1.3
1,084,043	+		LRK54_RS05055	0.78	+1.8
1,084,043	+		LRK54_RS05055	0.78	-0.9
1,084,043	+		LRK54_RS05055	0.78	-0.7
1,084,043	+		LRK54_RS05055	0.78	+0.3
1,084,043	+		LRK54_RS05055	0.78	-1.3
1,084,043	+		LRK54_RS05055	0.78	-0.1
1,084,043	+		LRK54_RS05055	0.78	-1.3
1,084,043	+		LRK54_RS05055	0.78	-0.4
1,084,043	+		LRK54_RS05055	0.78	-0.2
1,084,043	+		LRK54_RS05055	0.78	-1.2
1,084,043	+		LRK54_RS05055	0.78	-0.8
1,084,043	+		LRK54_RS05055	0.78	+0.4
1,084,043	+		LRK54_RS05055	0.78	+0.3
1,084,043	+		LRK54_RS05055	0.78	-0.8
1,084,044	-		LRK54_RS05055	0.79	-0.8
1,084,044	-		LRK54_RS05055	0.79	-1.6
1,084,044	-		LRK54_RS05055	0.79	-0.0
1,084,044	-		LRK54_RS05055	0.79	-1.1
1,084,044	-		LRK54_RS05055	0.79	-0.3
1,084,044	-		LRK54_RS05055	0.79	-0.6
1,084,044	-		LRK54_RS05055	0.79	-0.1
1,084,044	-		LRK54_RS05055	0.79	-1.2
1,084,044	-		LRK54_RS05055	0.79	-0.4
1,084,044	-		LRK54_RS05055	0.79	-0.8
1,084,044	-		LRK54_RS05055	0.79	+0.2
1,084,044	-		LRK54_RS05055	0.79	+0.9
1,084,044	-		LRK54_RS05055	0.79	+0.4
1,084,044	-		LRK54_RS05055	0.79	+0.8
1,084,250	+				-0.6
1,084,250	+				+0.6
1,084,250	+				+0.0
1,084,250	+				-0.3
1,084,250	+				-1.6
1,084,250	+				-0.6
1,084,251	-				-0.3
1,084,251	-				-0.0
1,084,251	-				-0.1
1,084,251	-				+0.8
1,084,256	+				-0.3
1,084,256	+				-0.8
1,084,256	+				-0.2
1,084,256	+				-0.5
1,084,256	+				+0.1
1,084,256	+				+0.4
1,084,256	+				-0.5
1,084,256	+				-0.6
1,084,256	+				+0.6
1,084,256	+				-0.1
1,084,256	+				+1.2
1,084,256	+				-0.1
1,084,256	+				-0.6
1,084,256	+				-2.1
1,084,256	+				-1.0
1,084,256	+				-0.2
1,084,256	+				-0.2
1,084,256	+				-1.2
1,084,256	+				-0.8
1,084,256	+				+2.7
1,084,256	+				+1.0
1,084,256	+				+0.3
1,084,256	+				-0.1
1,084,256	+				-0.3
1,084,256	+				+0.4
1,084,256	-				-0.3
1,084,257	-				-0.4
1,084,257	-				-0.3
1,084,257	-				-0.9
1,084,257	-				+0.3
1,084,257	-				+2.2
1,084,257	-				+0.1
1,084,257	-				+0.7
1,084,257	-				+0.3
1,084,257	-				-0.9
1,084,257	-				-0.3
1,084,257	-				+0.2
1,084,257	-				-0.8
1,084,257	-				-1.1
1,084,257	-				+0.2
1,084,257	-				-0.7
1,084,257	-				+0.1
1,084,257	-				+0.1
1,084,257	-				+0.2
1,084,257	-				-0.2
1,084,257	-				+0.6
1,084,257	-				-1.0
1,084,257	-				+0.5
1,084,257	-				+0.8
1,084,257	-				-0.7
1,084,257	-				-0.4
1,084,257	-				-1.2
1,084,257	-				+1.2
1,084,257	-				+0.6
1,084,257	-				+1.4
1,084,257	-				-0.2
1,084,257	-				+0.9
1,084,257	-				-0.7
1,084,257	-				-0.2
1,084,257	-				-2.7
1,084,257	-				+0.2
1,084,257	-				+0.8
1,084,257	-				-0.6
1,084,268	+				-0.0
1,084,268	+				-0.3
1,084,268	+				+0.0
1,084,269	-				-0.2
1,084,269	-				-0.3
1,084,269	-				-0.3
1,084,269	-				+0.3
1,084,269	-				-0.5
1,085,067	+		LRK54_RS05060	0.75	+0.4
1,085,068	-		LRK54_RS05060	0.75	+0.5
1,085,068	-		LRK54_RS05060	0.75	+0.1
1,085,284	+				-1.2
1,085,284	+				-0.8
1,085,284	+				+0.4
1,085,284	+				-0.5
1,085,284	+				-0.7
1,085,284	+				-1.3
1,085,284	+				-0.6
1,085,285	-				-0.8
1,085,285	-				+0.5
1,085,285	-				+0.4
1,085,285	-				+0.4
1,085,285	-				-2.5
1,085,285	-				-0.6
1,085,285	-				-0.2
1,085,285	-				+0.0
1,085,285	-				-0.9
1,085,285	-				+0.7
1,085,285	-				+0.5
1,085,285	-				+0.8
1,085,285	-				-0.7
1,085,378	+				+0.2
1,085,378	+				-0.5
1,085,378	+				-0.4
1,085,378	+				-0.9
1,085,378	+				-0.5
1,085,378	+				-1.3
1,085,379	-				+0.4
1,085,379	-				+0.3
1,085,379	-				-0.8
1,085,379	-				-0.2
1,085,379	-				-0.4
1,085,379	-				+0.5
1,085,379	-				+0.4
1,085,379	-				-0.5
1,085,420	+				-0.9
1,085,420	+				+1.0
1,085,420	+				+1.5
1,085,421	-				-0.3
1,085,421	-				-0.1
1,085,495	+		LRK54_RS05065	0.15	+1.2
1,085,495	+		LRK54_RS05065	0.15	+0.2
1,085,496	-		LRK54_RS05065	0.15	+0.2
1,085,496	-		LRK54_RS05065	0.15	-0.1
1,085,546	+		LRK54_RS05065	0.19	-1.6
1,085,547	-		LRK54_RS05065	0.19	-0.3
1,085,547	-		LRK54_RS05065	0.19	-0.1
1,085,547	-		LRK54_RS05065	0.19	+1.2
1,085,547	-		LRK54_RS05065	0.19	-0.2
1,085,547	-		LRK54_RS05065	0.19	-1.5
1,085,547	-		LRK54_RS05065	0.19	-1.9
1,085,577	-		LRK54_RS05065	0.22	+0.7
1,085,603	+		LRK54_RS05065	0.24	-0.3
1,085,603	+		LRK54_RS05065	0.24	+0.3
1,085,603	+		LRK54_RS05065	0.24	-0.3
1,085,604	-		LRK54_RS05065	0.24	-0.2
1,085,604	-		LRK54_RS05065	0.24	+0.1
1,085,604	-		LRK54_RS05065	0.24	-1.5
1,085,604	-		LRK54_RS05065	0.24	+1.0
1,085,604	-		LRK54_RS05065	0.24	+1.4
1,085,616	-		LRK54_RS05065	0.25	+1.5
1,085,667	-		LRK54_RS05065	0.29	+1.8
1,085,693	+		LRK54_RS05065	0.31	-1.0
1,085,694	-		LRK54_RS05065	0.31	-1.8
1,085,771	+		LRK54_RS05065	0.38	+0.0
1,085,795	+		LRK54_RS05065	0.40	+0.2
1,085,795	+		LRK54_RS05065	0.40	-0.5
1,085,795	+		LRK54_RS05065	0.40	+1.4
1,085,796	-		LRK54_RS05065	0.40	+0.0
1,085,834	+		LRK54_RS05065	0.43	-1.2
1,085,909	+		LRK54_RS05065	0.49	-0.5
1,085,909	+		LRK54_RS05065	0.49	+0.1
1,085,910	-		LRK54_RS05065	0.49	-0.5
1,085,924	+		LRK54_RS05065	0.50	+0.4
1,085,924	+		LRK54_RS05065	0.50	-0.2
1,085,925	-		LRK54_RS05065	0.50	-0.1
1,085,925	-		LRK54_RS05065	0.50	-0.0
1,085,925	-		LRK54_RS05065	0.50	+0.6
1,085,925	-		LRK54_RS05065	0.50	+0.4
1,085,990	+		LRK54_RS05065	0.56	-0.6
1,085,990	+		LRK54_RS05065	0.56	-1.8
1,085,990	+		LRK54_RS05065	0.56	-1.6
1,085,990	+		LRK54_RS05065	0.56	-1.1
1,085,990	+		LRK54_RS05065	0.56	-0.1
1,085,990	+		LRK54_RS05065	0.56	-0.3
1,085,990	+		LRK54_RS05065	0.56	+1.2
1,085,990	+		LRK54_RS05065	0.56	-1.2
1,085,990	+		LRK54_RS05065	0.56	-0.6
1,085,991	-		LRK54_RS05065	0.56	+0.3
1,085,991	-		LRK54_RS05065	0.56	+0.4
1,085,991	-		LRK54_RS05065	0.56	-0.9
1,085,991	-		LRK54_RS05065	0.56	+0.7
1,086,020	+		LRK54_RS05065	0.58	-0.1
1,086,020	+		LRK54_RS05065	0.58	+0.2
1,086,020	+		LRK54_RS05065	0.58	+1.0
1,086,020	+		LRK54_RS05065	0.58	-0.7
1,086,020	+		LRK54_RS05065	0.58	-0.3
1,086,021	-		LRK54_RS05065	0.58	+1.1
1,086,021	-		LRK54_RS05065	0.58	+2.7
1,086,021	-		LRK54_RS05065	0.58	-1.0
1,086,021	-		LRK54_RS05065	0.58	-0.2
1,086,021	-		LRK54_RS05065	0.58	+0.5
1,086,021	-		LRK54_RS05065	0.58	+1.1
1,086,021	-		LRK54_RS05065	0.58	-0.4
1,086,021	-		LRK54_RS05065	0.58	-0.1
1,086,021	-		LRK54_RS05065	0.58	-1.7
1,086,210	-		LRK54_RS05065	0.73	-0.2
1,086,225	-		LRK54_RS05065	0.75	+0.3
1,086,225	-		LRK54_RS05065	0.75	-0.4
1,086,225	-		LRK54_RS05065	0.75	-0.7
1,086,266	+		LRK54_RS05065	0.78	-0.7
1,086,266	+		LRK54_RS05065	0.78	+1.1
1,086,266	+		LRK54_RS05065	0.78	+0.9
1,086,266	+		LRK54_RS05065	0.78	-0.4
1,086,266	+		LRK54_RS05065	0.78	+0.9
1,086,266	+		LRK54_RS05065	0.78	+0.3
1,086,266	+		LRK54_RS05065	0.78	-0.1
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1,086,266	+		LRK54_RS05065	0.78	+0.1
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1,086,266	+		LRK54_RS05065	0.78	+1.0
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1,086,267	-		LRK54_RS05065	0.78	-0.4
1,086,267	-		LRK54_RS05065	0.78	-2.1
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