Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04960

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
1,052,424	+		LRK54_RS04955	0.81	-0.2
1,052,425	+		LRK54_RS04955	0.81	-1.2
1,052,425	+		LRK54_RS04955	0.81	-1.0
1,052,425	+		LRK54_RS04955	0.81	+0.7
1,052,425	+		LRK54_RS04955	0.81	+0.3
1,052,425	+		LRK54_RS04955	0.81	-1.8
1,052,425	+		LRK54_RS04955	0.81	+0.1
1,052,425	+		LRK54_RS04955	0.81	+1.2
1,052,425	+		LRK54_RS04955	0.81	+1.4
1,052,425	+		LRK54_RS04955	0.81	-1.0
1,052,425	+		LRK54_RS04955	0.81	+0.6
1,052,425	+		LRK54_RS04955	0.81	+0.2
1,052,425	+		LRK54_RS04955	0.81	-0.4
1,052,425	+		LRK54_RS04955	0.81	-0.2
1,052,425	+		LRK54_RS04955	0.81	-0.4
1,052,425	+		LRK54_RS04955	0.81	-0.3
1,052,425	+		LRK54_RS04955	0.81	+0.8
1,052,426	-		LRK54_RS04955	0.81	+1.4
1,052,426	-		LRK54_RS04955	0.81	-0.4
1,052,426	-		LRK54_RS04955	0.81	+0.2
1,052,426	-		LRK54_RS04955	0.81	-0.3
1,052,426	-		LRK54_RS04955	0.81	-0.5
1,052,426	-		LRK54_RS04955	0.81	-0.2
1,052,426	-		LRK54_RS04955	0.81	-1.5
1,052,426	-		LRK54_RS04955	0.81	-0.3
1,052,426	-		LRK54_RS04955	0.81	+0.5
1,052,426	-		LRK54_RS04955	0.81	-0.8
1,052,426	-		LRK54_RS04955	0.81	-1.0
1,052,974	+				+0.9
1,052,974	+				-1.0
1,052,974	+				-0.2
1,052,974	+				+0.8
1,052,974	+				+1.8
1,052,974	+				-1.2
1,052,974	+				-0.5
1,052,974	+				+0.6
1,052,974	+				-0.8
1,052,975	-				-0.5
1,052,975	-				+0.0
1,052,975	-				+0.5
1,052,975	-				+0.4
1,052,975	-				-0.3
1,052,975	-				+0.2
1,052,975	-				-0.8
1,052,975	-				-1.5
1,052,975	-				-0.4
1,052,975	-				+0.1
1,053,108	+				+0.1
1,053,108	+				-0.4
1,053,114	+				-0.9
1,053,114	+				-1.3
1,053,114	+				+0.2
1,053,114	+				-1.0
1,053,114	+				-0.1
1,053,114	+				-0.3
1,053,114	+				+0.3
1,053,114	+				+1.4
1,053,114	+				+0.4
1,053,114	+				-1.3
1,053,114	+				+0.8
1,053,114	+				+0.9
1,053,114	+				-1.2
1,053,114	+				+0.0
1,053,114	+				+0.5
1,053,114	+				+0.3
1,053,114	+				-0.9
1,053,114	+				+0.7
1,053,114	+				-1.0
1,053,114	+				-0.1
1,053,114	+				-0.5
1,053,114	+				+0.2
1,053,115	-				+0.8
1,053,115	-				-0.2
1,053,115	-				+1.4
1,053,115	-				+1.4
1,053,115	-				-1.3
1,053,115	-				-1.3
1,053,115	-				+0.8
1,053,115	-				+0.0
1,053,115	-				-0.5
1,053,115	-				-0.7
1,053,115	-				-1.4
1,053,115	-				+0.5
1,053,115	-				+0.0
1,053,115	-				-0.8
1,053,115	-				-0.2
1,053,115	-				+1.3
1,053,115	-				+0.3
1,053,115	-				-0.4
1,053,115	-				-0.8
1,053,115	-				-0.2
1,053,115	-				-0.7
1,053,115	-				+1.7
1,053,115	-				-0.1
1,053,115	-				-1.4
1,053,115	-				-0.3
1,053,115	-				-0.7
1,053,115	-				-0.1
1,053,115	-				-1.2
1,053,303	+		LRK54_RS04960	0.34	+1.0
1,053,303	+		LRK54_RS04960	0.34	-1.1
1,053,303	+		LRK54_RS04960	0.34	+0.0
1,053,303	+		LRK54_RS04960	0.34	-0.3
1,053,303	+		LRK54_RS04960	0.34	+0.7
1,053,303	+		LRK54_RS04960	0.34	-0.3
1,053,303	+		LRK54_RS04960	0.34	-0.1
1,053,304	-		LRK54_RS04960	0.34	+0.4
1,053,304	-		LRK54_RS04960	0.34	+0.2
1,053,304	-		LRK54_RS04960	0.34	-0.3
1,053,304	-		LRK54_RS04960	0.34	-0.0
1,053,304	-		LRK54_RS04960	0.34	+0.8
1,053,304	-		LRK54_RS04960	0.34	+0.3
1,053,304	-		LRK54_RS04960	0.34	-1.0
1,053,304	-		LRK54_RS04960	0.34	+0.2
1,053,304	-		LRK54_RS04960	0.34	+0.7
1,053,304	-		LRK54_RS04960	0.34	+0.7
1,053,304	-		LRK54_RS04960	0.34	+1.4
1,053,304	-		LRK54_RS04960	0.34	+1.1
1,053,304	-		LRK54_RS04960	0.34	+0.1
1,053,304	-		LRK54_RS04960	0.34	+1.1
1,053,386	+		LRK54_RS04960	0.45	+0.3
1,053,386	+		LRK54_RS04960	0.45	+0.3
1,053,386	+		LRK54_RS04960	0.45	-0.9
1,053,386	+		LRK54_RS04960	0.45	+0.4
1,053,387	-		LRK54_RS04960	0.45	+0.8
1,053,387	-		LRK54_RS04960	0.45	-0.8
1,053,387	-		LRK54_RS04960	0.45	+0.1
1,053,387	-		LRK54_RS04960	0.45	+0.5
1,053,387	-		LRK54_RS04960	0.45	-0.3
1,053,387	-		LRK54_RS04960	0.45	-1.0
1,053,894	+				+0.6
1,053,894	+				+0.8
1,053,894	+				+0.5
1,053,894	+				-0.4
1,053,894	+				-0.6
1,053,894	+				-0.9
1,053,894	+				-0.5
1,053,894	+				+0.4
1,053,894	+				-1.3
1,053,895	-				-0.1
1,053,895	-				-1.2
1,053,895	-				-0.3
1,053,895	-				-1.6
1,053,895	-				-1.2
1,053,895	-				-0.0
1,053,895	-				-0.3
1,053,895	-				+1.8
1,054,107	+		LRK54_RS04965	0.22	+0.6
1,054,108	-		LRK54_RS04965	0.22	+0.7
1,054,108	-		LRK54_RS04965	0.22	+0.4
1,054,108	-		LRK54_RS04965	0.22	+1.1
1,054,108	-		LRK54_RS04965	0.22	+1.3
1,054,138	+		LRK54_RS04965	0.25	+1.3
1,054,268	+		LRK54_RS04965	0.39	+1.1
1,054,359	+		LRK54_RS04965	0.48	+0.4
1,054,359	+		LRK54_RS04965	0.48	+0.7
1,054,359	+		LRK54_RS04965	0.48	+1.7
1,054,359	+		LRK54_RS04965	0.48	+1.3
1,054,360	-		LRK54_RS04965	0.48	+0.6
1,054,360	-		LRK54_RS04965	0.48	+0.7
1,054,360	-		LRK54_RS04965	0.48	+0.8
1,054,360	-		LRK54_RS04965	0.48	+0.6
1,054,360	-		LRK54_RS04965	0.48	+0.6
1,054,407	+		LRK54_RS04965	0.53	+0.8
1,054,407	+		LRK54_RS04965	0.53	+0.9
1,054,407	+		LRK54_RS04965	0.53	-1.7
1,054,407	+		LRK54_RS04965	0.53	+0.2
1,054,407	+		LRK54_RS04965	0.53	+0.5
1,054,407	+		LRK54_RS04965	0.53	+1.1
1,054,407	+		LRK54_RS04965	0.53	-0.1
1,054,407	+		LRK54_RS04965	0.53	+1.0
1,054,407	+		LRK54_RS04965	0.53	+1.4
1,054,407	+		LRK54_RS04965	0.53	-0.3
1,054,407	+		LRK54_RS04965	0.53	+2.2
1,054,407	+		LRK54_RS04965	0.53	+0.2
1,054,407	+		LRK54_RS04965	0.53	+0.4
1,054,407	+		LRK54_RS04965	0.53	+0.2
1,054,407	+		LRK54_RS04965	0.53	-0.6
1,054,407	+		LRK54_RS04965	0.53	+0.8
1,054,408	-		LRK54_RS04965	0.53	+1.0
1,054,408	-		LRK54_RS04965	0.53	+0.3
1,054,408	-		LRK54_RS04965	0.53	+1.4
1,054,408	-		LRK54_RS04965	0.53	+0.6
1,054,408	-		LRK54_RS04965	0.53	-1.4
1,054,408	-		LRK54_RS04965	0.53	+0.9
1,054,408	-		LRK54_RS04965	0.53	+0.8
1,054,408	-		LRK54_RS04965	0.53	+0.3
1,054,408	-		LRK54_RS04965	0.53	+0.3
1,054,408	-		LRK54_RS04965	0.53	+1.0
1,054,408	-		LRK54_RS04965	0.53	+0.3
1,054,408	-		LRK54_RS04965	0.53	+0.4
1,054,408	-		LRK54_RS04965	0.53	+0.8
1,054,408	-		LRK54_RS04965	0.53	-0.0
1,054,676	+		LRK54_RS04965	0.81	+0.6
1,054,677	-		LRK54_RS04965	0.81	+0.2
1,054,677	-		LRK54_RS04965	0.81	-0.4
1,054,776	+				+1.5
1,054,776	+				+0.4
1,054,777	-				-0.1