Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04790

Experiment: R2A pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS04780 and LRK54_RS04785 are separated by 2 nucleotidesLRK54_RS04785 and LRK54_RS04790 are separated by 29 nucleotidesLRK54_RS04790 and LRK54_RS04795 are separated by 27 nucleotidesLRK54_RS04795 and LRK54_RS04800 are separated by 105 nucleotides LRK54_RS04780: LRK54_RS04780 - DUF3501 family protein, at 1,016,500 to 1,017,081 _RS04780 LRK54_RS04785: LRK54_RS04785 - hypothetical protein, at 1,017,084 to 1,017,683 _RS04785 LRK54_RS04790: LRK54_RS04790 - adenine phosphoribosyltransferase, at 1,017,713 to 1,018,231 _RS04790 LRK54_RS04795: LRK54_RS04795 - DUF2007 domain-containing protein, at 1,018,259 to 1,018,531 _RS04795 LRK54_RS04800: LRK54_RS04800 - glutamine--tRNA ligase/YqeY domain fusion protein, at 1,018,637 to 1,020,412 _RS04800 Position (kb) 1017 1018 1019Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1016.728 kb on + strand, within LRK54_RS04780at 1016.728 kb on + strand, within LRK54_RS04780at 1016.728 kb on + strand, within LRK54_RS04780at 1016.728 kb on + strand, within LRK54_RS04780at 1016.729 kb on - strand, within LRK54_RS04780at 1016.729 kb on - strand, within LRK54_RS04780at 1016.729 kb on - strand, within LRK54_RS04780at 1016.783 kb on - strand, within LRK54_RS04780at 1017.118 kb on + strandat 1017.118 kb on + strandat 1017.118 kb on + strandat 1017.118 kb on + strandat 1017.118 kb on + strandat 1017.118 kb on + strandat 1017.118 kb on + strandat 1017.119 kb on - strandat 1017.119 kb on - strandat 1017.119 kb on - strandat 1017.119 kb on - strandat 1017.119 kb on - strandat 1017.119 kb on - strandat 1017.178 kb on + strand, within LRK54_RS04785at 1017.178 kb on + strand, within LRK54_RS04785at 1017.179 kb on - strand, within LRK54_RS04785at 1017.179 kb on - strand, within LRK54_RS04785at 1017.193 kb on + strand, within LRK54_RS04785at 1017.193 kb on + strand, within LRK54_RS04785at 1017.193 kb on + strand, within LRK54_RS04785at 1017.194 kb on - strand, within LRK54_RS04785at 1017.303 kb on + strand, within LRK54_RS04785at 1017.303 kb on + strand, within LRK54_RS04785at 1017.303 kb on + strand, within LRK54_RS04785at 1017.303 kb on + strand, within LRK54_RS04785at 1017.304 kb on - strand, within LRK54_RS04785at 1017.304 kb on - strand, within LRK54_RS04785at 1017.304 kb on - strand, within LRK54_RS04785at 1017.304 kb on - strand, within LRK54_RS04785at 1017.304 kb on - strand, within LRK54_RS04785at 1017.417 kb on + strand, within LRK54_RS04785at 1017.417 kb on + strand, within LRK54_RS04785at 1017.417 kb on + strand, within LRK54_RS04785at 1017.417 kb on + strand, within LRK54_RS04785at 1017.417 kb on + strand, within LRK54_RS04785at 1017.417 kb on + strand, within LRK54_RS04785at 1017.417 kb on + strand, within LRK54_RS04785at 1017.417 kb on + strand, within LRK54_RS04785at 1017.417 kb on + strand, within LRK54_RS04785at 1017.417 kb on + strand, within LRK54_RS04785at 1017.417 kb on + strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.418 kb on - strand, within LRK54_RS04785at 1017.420 kb on + strand, within LRK54_RS04785at 1017.420 kb on + strand, within LRK54_RS04785at 1017.420 kb on + strand, within LRK54_RS04785at 1017.420 kb on + strand, within LRK54_RS04785at 1017.420 kb on + strand, within LRK54_RS04785at 1017.420 kb on + strand, within LRK54_RS04785at 1017.421 kb on - strand, within LRK54_RS04785at 1017.421 kb on - strand, within LRK54_RS04785at 1017.421 kb on - strand, within LRK54_RS04785at 1017.421 kb on - strand, within LRK54_RS04785at 1017.421 kb on - strand, within LRK54_RS04785at 1017.421 kb on - strand, within LRK54_RS04785at 1017.651 kb on + strandat 1017.651 kb on + strandat 1017.651 kb on + strandat 1017.651 kb on + strandat 1017.651 kb on + strandat 1017.651 kb on + strandat 1017.651 kb on + strandat 1017.651 kb on + strandat 1017.651 kb on + strandat 1017.651 kb on + strandat 1017.652 kb on - strandat 1017.652 kb on - strandat 1017.652 kb on - strandat 1017.652 kb on - strandat 1017.652 kb on - strandat 1017.652 kb on - strandat 1017.652 kb on - strandat 1017.718 kb on - strandat 1017.942 kb on + strand, within LRK54_RS04790at 1017.942 kb on + strand, within LRK54_RS04790at 1017.942 kb on + strand, within LRK54_RS04790at 1017.943 kb on - strand, within LRK54_RS04790at 1017.943 kb on - strand, within LRK54_RS04790at 1017.943 kb on - strand, within LRK54_RS04790at 1017.954 kb on + strand, within LRK54_RS04790at 1017.954 kb on + strand, within LRK54_RS04790at 1017.954 kb on + strand, within LRK54_RS04790at 1017.954 kb on + strand, within LRK54_RS04790at 1017.955 kb on - strand, within LRK54_RS04790at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.395 kb on + strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.396 kb on - strand, within LRK54_RS04795at 1018.434 kb on + strand, within LRK54_RS04795at 1018.434 kb on + strand, within LRK54_RS04795at 1018.434 kb on + strand, within LRK54_RS04795at 1018.434 kb on + strand, within LRK54_RS04795at 1018.435 kb on - strand, within LRK54_RS04795at 1018.435 kb on - strand, within LRK54_RS04795at 1018.435 kb on - strand, within LRK54_RS04795at 1018.518 kb on + strandat 1018.596 kb on + strandat 1018.596 kb on + strandat 1018.596 kb on + strandat 1018.596 kb on + strandat 1018.596 kb on + strandat 1018.597 kb on - strandat 1018.597 kb on - strandat 1018.597 kb on - strandat 1018.597 kb on - strandat 1018.597 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A pH7
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1,016,728 + LRK54_RS04780 0.39 -1.8
1,016,728 + LRK54_RS04780 0.39 +0.4
1,016,728 + LRK54_RS04780 0.39 -0.9
1,016,728 + LRK54_RS04780 0.39 +0.2
1,016,729 - LRK54_RS04780 0.39 -0.9
1,016,729 - LRK54_RS04780 0.39 -0.2
1,016,729 - LRK54_RS04780 0.39 -0.2
1,016,783 - LRK54_RS04780 0.49 -0.9
1,017,118 + +1.2
1,017,118 + -2.1
1,017,118 + +0.8
1,017,118 + +0.1
1,017,118 + +0.6
1,017,118 + -0.1
1,017,118 + +1.3
1,017,119 - -0.8
1,017,119 - -0.2
1,017,119 - -0.1
1,017,119 - +0.4
1,017,119 - +0.4
1,017,119 - -0.5
1,017,178 + LRK54_RS04785 0.16 +1.6
1,017,178 + LRK54_RS04785 0.16 +2.7
1,017,179 - LRK54_RS04785 0.16 +0.8
1,017,179 - LRK54_RS04785 0.16 -0.1
1,017,193 + LRK54_RS04785 0.18 +1.1
1,017,193 + LRK54_RS04785 0.18 -0.0
1,017,193 + LRK54_RS04785 0.18 -1.2
1,017,194 - LRK54_RS04785 0.18 -1.6
1,017,303 + LRK54_RS04785 0.36 -2.0
1,017,303 + LRK54_RS04785 0.36 -0.2
1,017,303 + LRK54_RS04785 0.36 -0.2
1,017,303 + LRK54_RS04785 0.36 -0.5
1,017,304 - LRK54_RS04785 0.37 +1.4
1,017,304 - LRK54_RS04785 0.37 -0.8
1,017,304 - LRK54_RS04785 0.37 -0.9
1,017,304 - LRK54_RS04785 0.37 -0.2
1,017,304 - LRK54_RS04785 0.37 +1.4
1,017,417 + LRK54_RS04785 0.56 +0.4
1,017,417 + LRK54_RS04785 0.56 -0.4
1,017,417 + LRK54_RS04785 0.56 -1.6
1,017,417 + LRK54_RS04785 0.56 +0.5
1,017,417 + LRK54_RS04785 0.56 +0.4
1,017,417 + LRK54_RS04785 0.56 +0.8
1,017,417 + LRK54_RS04785 0.56 -2.5
1,017,417 + LRK54_RS04785 0.56 -0.5
1,017,417 + LRK54_RS04785 0.56 -0.6
1,017,417 + LRK54_RS04785 0.56 +0.3
1,017,417 + LRK54_RS04785 0.56 -0.5
1,017,418 - LRK54_RS04785 0.56 +0.6
1,017,418 - LRK54_RS04785 0.56 -2.1
1,017,418 - LRK54_RS04785 0.56 +1.1
1,017,418 - LRK54_RS04785 0.56 -0.2
1,017,418 - LRK54_RS04785 0.56 -0.5
1,017,418 - LRK54_RS04785 0.56 -1.5
1,017,418 - LRK54_RS04785 0.56 -2.2
1,017,418 - LRK54_RS04785 0.56 +0.8
1,017,418 - LRK54_RS04785 0.56 +0.0
1,017,418 - LRK54_RS04785 0.56 -0.2
1,017,418 - LRK54_RS04785 0.56 +2.6
1,017,418 - LRK54_RS04785 0.56 -2.1
1,017,418 - LRK54_RS04785 0.56 -0.7
1,017,418 - LRK54_RS04785 0.56 -0.9
1,017,418 - LRK54_RS04785 0.56 -0.1
1,017,418 - LRK54_RS04785 0.56 +1.0
1,017,418 - LRK54_RS04785 0.56 -1.4
1,017,418 - LRK54_RS04785 0.56 +0.5
1,017,418 - LRK54_RS04785 0.56 +0.5
1,017,420 + LRK54_RS04785 0.56 -0.2
1,017,420 + LRK54_RS04785 0.56 -0.4
1,017,420 + LRK54_RS04785 0.56 -0.2
1,017,420 + LRK54_RS04785 0.56 -0.1
1,017,420 + LRK54_RS04785 0.56 +0.0
1,017,420 + LRK54_RS04785 0.56 -0.1
1,017,421 - LRK54_RS04785 0.56 -1.0
1,017,421 - LRK54_RS04785 0.56 -0.2
1,017,421 - LRK54_RS04785 0.56 -0.1
1,017,421 - LRK54_RS04785 0.56 +0.4
1,017,421 - LRK54_RS04785 0.56 -0.5
1,017,421 - LRK54_RS04785 0.56 -0.2
1,017,651 + +0.6
1,017,651 + +3.4
1,017,651 + -0.5
1,017,651 + -1.5
1,017,651 + +0.1
1,017,651 + +0.8
1,017,651 + -0.2
1,017,651 + -0.8
1,017,651 + +0.2
1,017,651 + +1.1
1,017,652 - -0.3
1,017,652 - -0.4
1,017,652 - -0.0
1,017,652 - -0.8
1,017,652 - +0.4
1,017,652 - -0.3
1,017,652 - -2.6
1,017,718 - +0.1
1,017,942 + LRK54_RS04790 0.44 -0.1
1,017,942 + LRK54_RS04790 0.44 +0.0
1,017,942 + LRK54_RS04790 0.44 +2.4
1,017,943 - LRK54_RS04790 0.44 +0.2
1,017,943 - LRK54_RS04790 0.44 +0.2
1,017,943 - LRK54_RS04790 0.44 +0.8
1,017,954 + LRK54_RS04790 0.46 -0.1
1,017,954 + LRK54_RS04790 0.46 +0.9
1,017,954 + LRK54_RS04790 0.46 -0.2
1,017,954 + LRK54_RS04790 0.46 -0.7
1,017,955 - LRK54_RS04790 0.47 +0.6
1,018,395 + LRK54_RS04795 0.50 -0.4
1,018,395 + LRK54_RS04795 0.50 -0.3
1,018,395 + LRK54_RS04795 0.50 +0.5
1,018,395 + LRK54_RS04795 0.50 +0.1
1,018,395 + LRK54_RS04795 0.50 -0.0
1,018,395 + LRK54_RS04795 0.50 -0.9
1,018,395 + LRK54_RS04795 0.50 -0.7
1,018,395 + LRK54_RS04795 0.50 +0.7
1,018,395 + LRK54_RS04795 0.50 -1.2
1,018,395 + LRK54_RS04795 0.50 -0.6
1,018,395 + LRK54_RS04795 0.50 +0.3
1,018,395 + LRK54_RS04795 0.50 -0.0
1,018,395 + LRK54_RS04795 0.50 -0.1
1,018,395 + LRK54_RS04795 0.50 -0.1
1,018,395 + LRK54_RS04795 0.50 +0.7
1,018,395 + LRK54_RS04795 0.50 -0.7
1,018,395 + LRK54_RS04795 0.50 -0.2
1,018,395 + LRK54_RS04795 0.50 -2.1
1,018,395 + LRK54_RS04795 0.50 +1.1
1,018,395 + LRK54_RS04795 0.50 +1.8
1,018,395 + LRK54_RS04795 0.50 -0.1
1,018,395 + LRK54_RS04795 0.50 +0.6
1,018,395 + LRK54_RS04795 0.50 +0.1
1,018,396 - LRK54_RS04795 0.50 -0.7
1,018,396 - LRK54_RS04795 0.50 -0.5
1,018,396 - LRK54_RS04795 0.50 -0.7
1,018,396 - LRK54_RS04795 0.50 +0.8
1,018,396 - LRK54_RS04795 0.50 +0.1
1,018,396 - LRK54_RS04795 0.50 -1.1
1,018,396 - LRK54_RS04795 0.50 -1.1
1,018,396 - LRK54_RS04795 0.50 -1.7
1,018,396 - LRK54_RS04795 0.50 +0.4
1,018,396 - LRK54_RS04795 0.50 -1.8
1,018,396 - LRK54_RS04795 0.50 -0.3
1,018,396 - LRK54_RS04795 0.50 -0.6
1,018,396 - LRK54_RS04795 0.50 +0.1
1,018,396 - LRK54_RS04795 0.50 -1.3
1,018,396 - LRK54_RS04795 0.50 +0.1
1,018,396 - LRK54_RS04795 0.50 -0.9
1,018,396 - LRK54_RS04795 0.50 -0.1
1,018,396 - LRK54_RS04795 0.50 +0.3
1,018,396 - LRK54_RS04795 0.50 -0.1
1,018,396 - LRK54_RS04795 0.50 +0.1
1,018,396 - LRK54_RS04795 0.50 +0.4
1,018,396 - LRK54_RS04795 0.50 +0.1
1,018,396 - LRK54_RS04795 0.50 -0.4
1,018,396 - LRK54_RS04795 0.50 -1.1
1,018,396 - LRK54_RS04795 0.50 -1.3
1,018,434 + LRK54_RS04795 0.64 -1.0
1,018,434 + LRK54_RS04795 0.64 -1.1
1,018,434 + LRK54_RS04795 0.64 -1.0
1,018,434 + LRK54_RS04795 0.64 -1.4
1,018,435 - LRK54_RS04795 0.64 -0.3
1,018,435 - LRK54_RS04795 0.64 +2.4
1,018,435 - LRK54_RS04795 0.64 +0.0
1,018,518 + +0.2
1,018,596 + +0.1
1,018,596 + +0.3
1,018,596 + +0.2
1,018,596 + -0.7
1,018,596 + -0.7
1,018,597 - -0.1
1,018,597 - -0.1
1,018,597 - +0.1
1,018,597 - +0.7
1,018,597 - -0.3

Or see this region's nucleotide sequence