Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04315

Experiment: R2A pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS04310 and LRK54_RS04315 are separated by 108 nucleotidesLRK54_RS04315 and LRK54_RS04320 are separated by 5 nucleotides LRK54_RS04310: LRK54_RS04310 - 3-dehydroquinate synthase, at 910,560 to 911,651 _RS04310 LRK54_RS04315: LRK54_RS04315 - WGR domain-containing protein, at 911,760 to 912,020 _RS04315 LRK54_RS04320: LRK54_RS04320 - uroporphyrinogen decarboxylase, at 912,026 to 913,096 _RS04320 Position (kb) 911 912 913Strain fitness (log2 ratio) -2 -1 0 1at 911.623 kb on + strandat 911.623 kb on + strandat 911.623 kb on + strandat 911.623 kb on + strandat 911.623 kb on + strandat 911.623 kb on + strandat 911.623 kb on + strandat 911.624 kb on - strandat 911.708 kb on + strandat 911.708 kb on + strandat 911.708 kb on + strandat 911.708 kb on + strandat 911.709 kb on - strandat 911.709 kb on - strandat 911.709 kb on - strandat 911.710 kb on + strandat 911.710 kb on + strandat 911.711 kb on - strandat 911.711 kb on - strandat 911.711 kb on - strandat 911.769 kb on + strandat 911.769 kb on + strandat 911.769 kb on + strandat 911.808 kb on + strand, within LRK54_RS04315at 911.808 kb on + strand, within LRK54_RS04315at 911.856 kb on + strand, within LRK54_RS04315at 912.009 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A pH7
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911,623 + +0.4
911,623 + -0.4
911,623 + -1.3
911,623 + -0.4
911,623 + -1.2
911,623 + -0.1
911,623 + +0.1
911,624 - +0.4
911,708 + -1.8
911,708 + +1.4
911,708 + -0.1
911,708 + -1.8
911,709 - -0.6
911,709 - +0.1
911,709 - +0.1
911,710 + -0.7
911,710 + -0.2
911,711 - +1.1
911,711 - -0.6
911,711 - -0.1
911,769 + -0.2
911,769 + +1.1
911,769 + -0.2
911,808 + LRK54_RS04315 0.18 +1.4
911,808 + LRK54_RS04315 0.18 -1.1
911,856 + LRK54_RS04315 0.37 -0.3
912,009 + -0.1

Or see this region's nucleotide sequence