Experiment: R2A pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04250 and LRK54_RS04255 are separated by 153 nucleotides LRK54_RS04255 and LRK54_RS04260 are separated by 368 nucleotides
LRK54_RS04250: LRK54_RS04250 - PilT/PilU family type 4a pilus ATPase, at 900,693 to 901,859
_RS04250
LRK54_RS04255: LRK54_RS04255 - type IV pilus twitching motility protein PilT, at 902,013 to 903,050
_RS04255
LRK54_RS04260: LRK54_RS04260 - pyrroline-5-carboxylate reductase, at 903,419 to 904,243
_RS04260
Position (kb) 902
903
904 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 901.360 kb on + strand, within LRK54_RS04250 at 901.360 kb on + strand, within LRK54_RS04250 at 901.360 kb on + strand, within LRK54_RS04250 at 901.360 kb on + strand, within LRK54_RS04250 at 901.361 kb on - strand, within LRK54_RS04250 at 901.361 kb on - strand, within LRK54_RS04250 at 901.361 kb on - strand, within LRK54_RS04250 at 901.361 kb on - strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.571 kb on + strand, within LRK54_RS04250 at 901.571 kb on + strand, within LRK54_RS04250 at 901.571 kb on + strand, within LRK54_RS04250 at 901.571 kb on + strand, within LRK54_RS04250 at 901.572 kb on - strand, within LRK54_RS04250 at 901.572 kb on - strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.592 kb on - strand, within LRK54_RS04250 at 901.592 kb on - strand, within LRK54_RS04250 at 901.592 kb on - strand, within LRK54_RS04250 at 901.865 kb on + strand at 901.866 kb on - strand at 901.866 kb on - strand at 902.041 kb on + strand at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.455 kb on + strand, within LRK54_RS04255 at 902.455 kb on + strand, within LRK54_RS04255 at 902.455 kb on + strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.596 kb on + strand, within LRK54_RS04255 at 902.596 kb on + strand, within LRK54_RS04255 at 902.597 kb on - strand, within LRK54_RS04255 at 902.597 kb on - strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.863 kb on + strand, within LRK54_RS04255 at 902.863 kb on + strand, within LRK54_RS04255 at 902.864 kb on - strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.182 kb on + strand at 903.182 kb on + strand at 903.182 kb on + strand at 903.183 kb on - strand at 903.183 kb on - strand at 903.200 kb on - strand at 903.211 kb on + strand at 903.211 kb on + strand at 903.212 kb on - strand at 903.214 kb on + strand at 903.214 kb on + strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.572 kb on + strand, within LRK54_RS04260 at 903.573 kb on - strand, within LRK54_RS04260 at 903.573 kb on - strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.951 kb on - strand, within LRK54_RS04260 at 903.951 kb on - strand, within LRK54_RS04260 at 903.951 kb on - strand, within LRK54_RS04260 at 903.951 kb on - strand, within LRK54_RS04260
Per-strain Table
Position Strand Gene LocusTag Fraction R2A pH7 remove 901,360 + LRK54_RS04250 0.57 +0.4 901,360 + LRK54_RS04250 0.57 -1.2 901,360 + LRK54_RS04250 0.57 +0.2 901,360 + LRK54_RS04250 0.57 -0.9 901,361 - LRK54_RS04250 0.57 -2.1 901,361 - LRK54_RS04250 0.57 +0.3 901,361 - LRK54_RS04250 0.57 -2.3 901,361 - LRK54_RS04250 0.57 +1.3 901,388 + LRK54_RS04250 0.60 -1.1 901,388 + LRK54_RS04250 0.60 -1.8 901,388 + LRK54_RS04250 0.60 -0.4 901,388 + LRK54_RS04250 0.60 +1.4 901,388 + LRK54_RS04250 0.60 -0.7 901,388 + LRK54_RS04250 0.60 +0.1 901,388 + LRK54_RS04250 0.60 +1.4 901,388 + LRK54_RS04250 0.60 -0.5 901,388 + LRK54_RS04250 0.60 -0.4 901,388 + LRK54_RS04250 0.60 +1.0 901,388 + LRK54_RS04250 0.60 +0.7 901,388 + LRK54_RS04250 0.60 -0.0 901,388 + LRK54_RS04250 0.60 +0.1 901,388 + LRK54_RS04250 0.60 -1.1 901,388 + LRK54_RS04250 0.60 -1.0 901,388 + LRK54_RS04250 0.60 +0.1 901,388 + LRK54_RS04250 0.60 -0.8 901,388 + LRK54_RS04250 0.60 -1.4 901,389 - LRK54_RS04250 0.60 -0.4 901,389 - LRK54_RS04250 0.60 -0.1 901,389 - LRK54_RS04250 0.60 +0.1 901,389 - LRK54_RS04250 0.60 -0.2 901,389 - LRK54_RS04250 0.60 -0.1 901,389 - LRK54_RS04250 0.60 +0.3 901,389 - LRK54_RS04250 0.60 +0.8 901,389 - LRK54_RS04250 0.60 +1.0 901,571 + LRK54_RS04250 0.75 -0.2 901,571 + LRK54_RS04250 0.75 +1.0 901,571 + LRK54_RS04250 0.75 +1.8 901,571 + LRK54_RS04250 0.75 -0.6 901,572 - LRK54_RS04250 0.75 -0.6 901,572 - LRK54_RS04250 0.75 -0.5 901,591 + LRK54_RS04250 0.77 +0.2 901,591 + LRK54_RS04250 0.77 -0.9 901,591 + LRK54_RS04250 0.77 -0.4 901,591 + LRK54_RS04250 0.77 -0.8 901,591 + LRK54_RS04250 0.77 +0.8 901,591 + LRK54_RS04250 0.77 -1.1 901,592 - LRK54_RS04250 0.77 +1.7 901,592 - LRK54_RS04250 0.77 -1.1 901,592 - LRK54_RS04250 0.77 +0.6 901,865 + +0.5 901,866 - -1.0 901,866 - -1.1 902,041 + +2.1 902,146 + LRK54_RS04255 0.13 +0.4 902,146 + LRK54_RS04255 0.13 +0.4 902,146 + LRK54_RS04255 0.13 +1.0 902,146 + LRK54_RS04255 0.13 -1.4 902,146 + LRK54_RS04255 0.13 +3.4 902,146 + LRK54_RS04255 0.13 -0.5 902,146 + LRK54_RS04255 0.13 +1.8 902,146 + LRK54_RS04255 0.13 +0.0 902,146 + LRK54_RS04255 0.13 +0.1 902,147 - LRK54_RS04255 0.13 -0.2 902,147 - LRK54_RS04255 0.13 +0.3 902,147 - LRK54_RS04255 0.13 +1.5 902,147 - LRK54_RS04255 0.13 +0.4 902,147 - LRK54_RS04255 0.13 +1.3 902,147 - LRK54_RS04255 0.13 -0.4 902,147 - LRK54_RS04255 0.13 +0.6 902,147 - LRK54_RS04255 0.13 +0.8 902,147 - LRK54_RS04255 0.13 -0.5 902,147 - LRK54_RS04255 0.13 +2.0 902,455 + LRK54_RS04255 0.43 +0.2 902,455 + LRK54_RS04255 0.43 +0.8 902,455 + LRK54_RS04255 0.43 +0.3 902,456 - LRK54_RS04255 0.43 -0.6 902,456 - LRK54_RS04255 0.43 +0.2 902,456 - LRK54_RS04255 0.43 +0.7 902,456 - LRK54_RS04255 0.43 -0.6 902,456 - LRK54_RS04255 0.43 +0.4 902,456 - LRK54_RS04255 0.43 +0.2 902,456 - LRK54_RS04255 0.43 +0.3 902,456 - LRK54_RS04255 0.43 +0.4 902,456 - LRK54_RS04255 0.43 +0.3 902,596 + LRK54_RS04255 0.56 -0.4 902,596 + LRK54_RS04255 0.56 +0.5 902,597 - LRK54_RS04255 0.56 -1.6 902,597 - LRK54_RS04255 0.56 +0.4 902,851 + LRK54_RS04255 0.81 +1.3 902,851 + LRK54_RS04255 0.81 +1.8 902,851 + LRK54_RS04255 0.81 +1.4 902,851 + LRK54_RS04255 0.81 +1.0 902,851 + LRK54_RS04255 0.81 +1.4 902,851 + LRK54_RS04255 0.81 -0.2 902,851 + LRK54_RS04255 0.81 -0.4 902,852 - LRK54_RS04255 0.81 -1.7 902,852 - LRK54_RS04255 0.81 -0.0 902,852 - LRK54_RS04255 0.81 +1.2 902,852 - LRK54_RS04255 0.81 +0.9 902,852 - LRK54_RS04255 0.81 -0.7 902,852 - LRK54_RS04255 0.81 +1.4 902,863 + LRK54_RS04255 0.82 -0.9 902,863 + LRK54_RS04255 0.82 +0.1 902,864 - LRK54_RS04255 0.82 -0.9 902,896 + LRK54_RS04255 0.85 -1.3 902,896 + LRK54_RS04255 0.85 +0.7 902,896 + LRK54_RS04255 0.85 -0.1 902,896 + LRK54_RS04255 0.85 -0.3 902,896 + LRK54_RS04255 0.85 -0.8 902,897 - LRK54_RS04255 0.85 +0.8 902,897 - LRK54_RS04255 0.85 +1.8 902,897 - LRK54_RS04255 0.85 +0.6 902,897 - LRK54_RS04255 0.85 -0.6 902,897 - LRK54_RS04255 0.85 -0.4 902,897 - LRK54_RS04255 0.85 +0.6 902,897 - LRK54_RS04255 0.85 +0.2 903,095 + +0.4 903,095 + +0.2 903,095 + +0.8 903,095 + +0.2 903,095 + +1.7 903,095 + -0.6 903,095 + -0.9 903,095 + +0.7 903,095 + +0.7 903,096 - -0.6 903,096 - -0.2 903,096 - +0.2 903,096 - +0.1 903,096 - +0.1 903,096 - -0.8 903,182 + +0.5 903,182 + -0.2 903,182 + -0.5 903,183 - +1.2 903,183 - -0.4 903,200 - -1.1 903,211 + +0.1 903,211 + -0.2 903,212 - +0.4 903,214 + -1.9 903,214 + -0.2 903,215 - -1.1 903,215 - +0.2 903,215 - +0.1 903,215 - +0.7 903,215 - +0.0 903,215 - +0.1 903,215 - +0.4 903,215 - -1.1 903,215 - -0.2 903,389 + -0.3 903,389 + -0.1 903,389 + +0.4 903,389 + -0.9 903,389 + +0.5 903,389 + -0.2 903,389 + +0.4 903,389 + +0.8 903,389 + -0.1 903,389 + +1.8 903,389 + -1.8 903,389 + -0.9 903,389 + -0.2 903,389 + -2.4 903,389 + -0.3 903,389 + -0.1 903,389 + +0.3 903,389 + -0.8 903,389 + +0.2 903,389 + -0.1 903,389 + -0.6 903,389 + -0.6 903,389 + -0.4 903,389 + -0.7 903,390 - +0.2 903,390 - -0.8 903,390 - -0.1 903,390 - +1.0 903,390 - +0.7 903,390 - +0.1 903,390 - +1.4 903,390 - -0.1 903,390 - +1.1 903,390 - -1.5 903,390 - +0.6 903,390 - +0.3 903,390 - -0.7 903,390 - -0.4 903,390 - -0.3 903,390 - +0.9 903,390 - +0.4 903,390 - -0.2 903,390 - +0.5 903,390 - -0.6 903,390 - +0.6 903,390 - +0.1 903,390 - +0.8 903,390 - -0.5 903,390 - -0.0 903,390 - +0.4 903,390 - -0.2 903,390 - +0.4 903,390 - +3.4 903,390 - -1.3 903,390 - +0.2 903,572 + LRK54_RS04260 0.19 +0.7 903,573 - LRK54_RS04260 0.19 -0.6 903,573 - LRK54_RS04260 0.19 -2.4 903,950 + LRK54_RS04260 0.64 -0.5 903,950 + LRK54_RS04260 0.64 +0.1 903,950 + LRK54_RS04260 0.64 -1.2 903,950 + LRK54_RS04260 0.64 +0.3 903,950 + LRK54_RS04260 0.64 -1.0 903,950 + LRK54_RS04260 0.64 -0.4 903,951 - LRK54_RS04260 0.64 -0.0 903,951 - LRK54_RS04260 0.64 +0.7 903,951 - LRK54_RS04260 0.64 -0.2 903,951 - LRK54_RS04260 0.64 +0.6
Or see this region's nucleotide sequence