Experiment: R2A pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03980 and LRK54_RS03985 are separated by 92 nucleotides LRK54_RS03985 and LRK54_RS03990 are separated by 90 nucleotides
LRK54_RS03980: LRK54_RS03980 - thymidylate synthase, at 837,550 to 838,344
_RS03980
LRK54_RS03985: LRK54_RS03985 - TIGR00266 family protein, at 838,437 to 839,450
_RS03985
LRK54_RS03990: LRK54_RS03990 - prolipoprotein diacylglyceryl transferase, at 839,541 to 840,359
_RS03990
Position (kb) 838
839
840 Strain fitness (log2 ratio) -2
-1
0
1
2 at 837.500 kb on + strand at 837.500 kb on + strand at 837.551 kb on + strand at 837.551 kb on + strand at 838.356 kb on - strand at 838.356 kb on - strand at 838.356 kb on - strand at 838.356 kb on - strand at 838.405 kb on + strand at 838.406 kb on - strand at 838.406 kb on - strand at 838.406 kb on - strand at 838.459 kb on - strand at 838.536 kb on + strand at 838.536 kb on + strand at 838.537 kb on - strand at 838.537 kb on - strand at 838.537 kb on - strand at 838.537 kb on - strand at 838.537 kb on - strand at 838.537 kb on - strand at 838.663 kb on - strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.780 kb on + strand, within LRK54_RS03985 at 838.780 kb on + strand, within LRK54_RS03985 at 838.781 kb on - strand, within LRK54_RS03985 at 838.781 kb on - strand, within LRK54_RS03985 at 838.936 kb on - strand, within LRK54_RS03985 at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.466 kb on - strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.498 kb on + strand at 839.498 kb on + strand at 839.499 kb on - strand at 839.499 kb on - strand at 839.499 kb on - strand at 839.531 kb on + strand at 839.531 kb on + strand at 839.532 kb on - strand at 839.532 kb on - strand at 839.532 kb on - strand at 839.596 kb on - strand at 839.596 kb on - strand at 839.596 kb on - strand at 839.596 kb on - strand at 840.347 kb on - strand at 840.391 kb on + strand at 840.391 kb on + strand at 840.391 kb on + strand at 840.391 kb on + strand at 840.392 kb on - strand at 840.445 kb on + strand at 840.445 kb on + strand at 840.445 kb on + strand at 840.445 kb on + strand at 840.445 kb on + strand at 840.446 kb on - strand at 840.446 kb on - strand at 840.446 kb on - strand at 840.446 kb on - strand at 840.446 kb on - strand at 840.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A pH7 remove 837,500 + -1.7 837,500 + -0.2 837,551 + +0.5 837,551 + +0.6 838,356 - -0.4 838,356 - -1.3 838,356 - -0.6 838,356 - +0.4 838,405 + -0.6 838,406 - +1.0 838,406 - +1.4 838,406 - -2.2 838,459 - +0.5 838,536 + +2.7 838,536 + +0.8 838,537 - -0.3 838,537 - -0.6 838,537 - +2.0 838,537 - -0.7 838,537 - +1.6 838,537 - -0.5 838,663 - LRK54_RS03985 0.22 -0.1 838,749 + LRK54_RS03985 0.31 -1.0 838,749 + LRK54_RS03985 0.31 +0.6 838,749 + LRK54_RS03985 0.31 +0.3 838,749 + LRK54_RS03985 0.31 +0.7 838,749 + LRK54_RS03985 0.31 +0.7 838,749 + LRK54_RS03985 0.31 -0.2 838,749 + LRK54_RS03985 0.31 +0.4 838,749 + LRK54_RS03985 0.31 +0.4 838,749 + LRK54_RS03985 0.31 +2.4 838,749 + LRK54_RS03985 0.31 +0.2 838,749 + LRK54_RS03985 0.31 -0.0 838,749 + LRK54_RS03985 0.31 -0.2 838,749 + LRK54_RS03985 0.31 +0.4 838,749 + LRK54_RS03985 0.31 -0.2 838,749 + LRK54_RS03985 0.31 +0.6 838,750 - LRK54_RS03985 0.31 -0.2 838,750 - LRK54_RS03985 0.31 -0.2 838,750 - LRK54_RS03985 0.31 +0.2 838,750 - LRK54_RS03985 0.31 +0.6 838,750 - LRK54_RS03985 0.31 +0.1 838,750 - LRK54_RS03985 0.31 +1.1 838,750 - LRK54_RS03985 0.31 +1.0 838,750 - LRK54_RS03985 0.31 +0.4 838,750 - LRK54_RS03985 0.31 +0.8 838,750 - LRK54_RS03985 0.31 +0.4 838,750 - LRK54_RS03985 0.31 +1.3 838,750 - LRK54_RS03985 0.31 +0.3 838,750 - LRK54_RS03985 0.31 -0.0 838,780 + LRK54_RS03985 0.34 -1.0 838,780 + LRK54_RS03985 0.34 +1.2 838,781 - LRK54_RS03985 0.34 -0.6 838,781 - LRK54_RS03985 0.34 +2.0 838,936 - LRK54_RS03985 0.49 -0.4 839,464 + -0.3 839,464 + +0.9 839,464 + -0.3 839,464 + +0.2 839,464 + +1.2 839,464 + -0.2 839,464 + -0.9 839,464 + +1.1 839,464 + +0.8 839,464 + -0.4 839,464 + -0.0 839,464 + +0.4 839,465 - -0.9 839,465 - +0.1 839,465 - +0.1 839,465 - -0.1 839,465 - +0.2 839,465 - +0.8 839,465 - -0.9 839,465 - +0.6 839,465 - +1.0 839,465 - +0.7 839,466 - -0.4 839,496 + +0.1 839,496 + -0.2 839,496 + -0.7 839,496 + +0.3 839,496 + -0.9 839,496 + +2.4 839,496 + +1.2 839,496 + -0.4 839,496 + -0.5 839,496 + -0.3 839,496 + -1.3 839,496 + -2.0 839,496 + -0.5 839,496 + +0.1 839,496 + -0.5 839,496 + -0.2 839,496 + +0.0 839,496 + -1.3 839,496 + -0.5 839,496 + -0.6 839,496 + +0.5 839,496 + -0.5 839,496 + -0.2 839,496 + -1.1 839,496 + +0.1 839,496 + +0.3 839,497 - -0.6 839,497 - -0.2 839,497 - -0.9 839,497 - +0.4 839,497 - +1.3 839,497 - +1.3 839,497 - +0.3 839,497 - -0.3 839,497 - +0.6 839,497 - -0.5 839,497 - +2.0 839,497 - -0.4 839,497 - -0.4 839,497 - -1.7 839,497 - +1.3 839,497 - -0.5 839,497 - +0.8 839,497 - +0.1 839,497 - -0.3 839,497 - +1.0 839,498 + +0.4 839,498 + +2.7 839,499 - -0.3 839,499 - +0.2 839,499 - +0.4 839,531 + -0.1 839,531 + +0.3 839,532 - +0.5 839,532 - +0.2 839,532 - -0.9 839,596 - +0.1 839,596 - +0.8 839,596 - +0.7 839,596 - -1.0 840,347 - +0.2 840,391 + +0.7 840,391 + +0.3 840,391 + +1.4 840,391 + +1.3 840,392 - -1.4 840,445 + -0.2 840,445 + +0.3 840,445 + -0.7 840,445 + -1.0 840,445 + +0.3 840,446 - +0.0 840,446 - +0.8 840,446 - -0.3 840,446 - -1.6 840,446 - -0.4 840,446 - -1.0
Or see this region's nucleotide sequence