Experiment: R2A pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02015 and LRK54_RS02020 are separated by 53 nucleotides LRK54_RS02020 and LRK54_RS02025 are separated by 4 nucleotides LRK54_RS02025 and LRK54_RS02030 overlap by 4 nucleotides LRK54_RS02030 and LRK54_RS02035 are separated by 533 nucleotides
LRK54_RS02015: LRK54_RS02015 - cation diffusion facilitator family transporter, at 424,608 to 425,510
_RS02015
LRK54_RS02020: LRK54_RS02020 - DUF2058 domain-containing protein, at 425,564 to 426,103
_RS02020
LRK54_RS02025: LRK54_RS02025 - VOC family protein, at 426,108 to 426,500
_RS02025
LRK54_RS02030: LRK54_RS02030 - MmcQ/YjbR family DNA-binding protein, at 426,497 to 426,895
_RS02030
LRK54_RS02035: LRK54_RS02035 - GNAT family N-acetyltransferase, at 427,429 to 427,581
_RS02035
Position (kb) 426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.948 kb on + strand, within LRK54_RS02020 at 425.948 kb on + strand, within LRK54_RS02020 at 425.948 kb on + strand, within LRK54_RS02020 at 425.949 kb on - strand, within LRK54_RS02020 at 425.949 kb on - strand, within LRK54_RS02020 at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.065 kb on + strand at 426.066 kb on - strand at 426.145 kb on + strand at 426.145 kb on + strand at 426.146 kb on - strand at 426.146 kb on - strand at 426.146 kb on - strand at 426.146 kb on - strand at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.176 kb on - strand, within LRK54_RS02025 at 426.176 kb on - strand, within LRK54_RS02025 at 426.317 kb on + strand, within LRK54_RS02025 at 426.318 kb on - strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.457 kb on + strand, within LRK54_RS02025 at 426.457 kb on + strand, within LRK54_RS02025 at 426.458 kb on - strand, within LRK54_RS02025 at 426.458 kb on - strand, within LRK54_RS02025 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.660 kb on + strand, within LRK54_RS02030 at 426.661 kb on - strand, within LRK54_RS02030 at 426.661 kb on - strand, within LRK54_RS02030 at 426.661 kb on - strand, within LRK54_RS02030 at 426.814 kb on + strand, within LRK54_RS02030 at 426.958 kb on + strand at 427.082 kb on - strand at 427.129 kb on + strand at 427.130 kb on - strand at 427.130 kb on - strand at 427.393 kb on + strand at 427.393 kb on + strand at 427.393 kb on + strand at 427.393 kb on + strand at 427.393 kb on + strand at 427.393 kb on + strand at 427.393 kb on + strand at 427.393 kb on + strand at 427.394 kb on - strand at 427.394 kb on - strand at 427.394 kb on - strand at 427.394 kb on - strand at 427.394 kb on - strand at 427.394 kb on - strand at 427.394 kb on - strand at 427.394 kb on - strand at 427.394 kb on - strand at 427.394 kb on - strand at 427.394 kb on - strand at 427.394 kb on - strand at 427.450 kb on + strand, within LRK54_RS02035 at 427.450 kb on + strand, within LRK54_RS02035 at 427.450 kb on + strand, within LRK54_RS02035 at 427.450 kb on + strand, within LRK54_RS02035 at 427.450 kb on + strand, within LRK54_RS02035 at 427.450 kb on + strand, within LRK54_RS02035 at 427.450 kb on + strand, within LRK54_RS02035 at 427.450 kb on + strand, within LRK54_RS02035 at 427.450 kb on + strand, within LRK54_RS02035 at 427.450 kb on + strand, within LRK54_RS02035 at 427.450 kb on + strand, within LRK54_RS02035 at 427.450 kb on + strand, within LRK54_RS02035 at 427.450 kb on + strand, within LRK54_RS02035 at 427.451 kb on - strand, within LRK54_RS02035 at 427.451 kb on - strand, within LRK54_RS02035 at 427.451 kb on - strand, within LRK54_RS02035 at 427.451 kb on - strand, within LRK54_RS02035 at 427.451 kb on - strand, within LRK54_RS02035 at 427.451 kb on - strand, within LRK54_RS02035 at 427.451 kb on - strand, within LRK54_RS02035 at 427.451 kb on - strand, within LRK54_RS02035 at 427.451 kb on - strand, within LRK54_RS02035 at 427.451 kb on - strand, within LRK54_RS02035 at 427.451 kb on - strand, within LRK54_RS02035 at 427.451 kb on - strand, within LRK54_RS02035 at 427.451 kb on - strand, within LRK54_RS02035
Per-strain Table
Position Strand Gene LocusTag Fraction R2A pH7 remove 425,523 + -0.1 425,523 + +1.8 425,523 + -0.4 425,523 + +1.1 425,523 + -0.6 425,523 + +0.1 425,523 + +1.1 425,523 + -1.6 425,523 + +2.8 425,523 + -0.2 425,523 + +0.1 425,523 + -0.3 425,523 + -1.2 425,523 + -0.2 425,523 + +0.5 425,523 + +0.8 425,523 + -0.6 425,523 + -0.2 425,523 + +0.8 425,523 + +0.4 425,524 - -1.2 425,524 - -0.1 425,524 - -0.1 425,524 - -0.0 425,524 - -0.2 425,524 - +0.3 425,524 - +0.2 425,524 - -0.6 425,524 - +0.0 425,524 - -0.4 425,524 - +0.3 425,524 - -1.2 425,524 - -1.6 425,524 - +1.0 425,524 - -0.8 425,524 - -0.4 425,948 + LRK54_RS02020 0.71 +1.1 425,948 + LRK54_RS02020 0.71 -1.1 425,948 + LRK54_RS02020 0.71 +1.4 425,949 - LRK54_RS02020 0.71 -0.3 425,949 - LRK54_RS02020 0.71 -1.5 426,062 + -0.9 426,062 + +0.8 426,062 + +0.4 426,062 + -1.3 426,062 + -0.7 426,062 + -0.7 426,062 + +1.8 426,063 - -0.1 426,063 - +1.1 426,063 - +0.3 426,063 - -0.1 426,063 - +1.3 426,063 - -0.2 426,063 - -0.5 426,063 - -0.5 426,063 - -0.0 426,065 + -1.2 426,066 - +0.2 426,145 + -0.3 426,145 + -1.7 426,146 - +0.0 426,146 - -0.0 426,146 - +0.4 426,146 - -0.2 426,175 + LRK54_RS02025 0.17 -0.5 426,175 + LRK54_RS02025 0.17 +0.6 426,175 + LRK54_RS02025 0.17 +0.6 426,175 + LRK54_RS02025 0.17 -0.2 426,175 + LRK54_RS02025 0.17 +0.3 426,175 + LRK54_RS02025 0.17 +0.2 426,176 - LRK54_RS02025 0.17 -1.7 426,176 - LRK54_RS02025 0.17 +0.6 426,317 + LRK54_RS02025 0.53 -1.2 426,318 - LRK54_RS02025 0.53 +0.6 426,436 + LRK54_RS02025 0.83 -0.1 426,436 + LRK54_RS02025 0.83 -0.2 426,436 + LRK54_RS02025 0.83 -0.2 426,436 + LRK54_RS02025 0.83 +0.3 426,436 + LRK54_RS02025 0.83 +0.6 426,437 - LRK54_RS02025 0.84 +1.3 426,437 - LRK54_RS02025 0.84 +0.0 426,437 - LRK54_RS02025 0.84 +2.0 426,437 - LRK54_RS02025 0.84 +0.1 426,437 - LRK54_RS02025 0.84 +3.4 426,437 - LRK54_RS02025 0.84 -0.0 426,437 - LRK54_RS02025 0.84 +1.4 426,437 - LRK54_RS02025 0.84 -0.4 426,457 + LRK54_RS02025 0.89 -1.5 426,457 + LRK54_RS02025 0.89 +1.1 426,458 - LRK54_RS02025 0.89 -0.2 426,458 - LRK54_RS02025 0.89 -0.3 426,574 + LRK54_RS02030 0.19 +1.4 426,574 + LRK54_RS02030 0.19 -0.2 426,574 + LRK54_RS02030 0.19 +0.0 426,574 + LRK54_RS02030 0.19 -0.1 426,574 + LRK54_RS02030 0.19 -0.2 426,574 + LRK54_RS02030 0.19 +0.6 426,574 + LRK54_RS02030 0.19 +0.3 426,574 + LRK54_RS02030 0.19 +0.3 426,574 + LRK54_RS02030 0.19 +1.4 426,574 + LRK54_RS02030 0.19 -0.5 426,574 + LRK54_RS02030 0.19 -0.3 426,574 + LRK54_RS02030 0.19 -0.8 426,575 - LRK54_RS02030 0.20 -0.7 426,575 - LRK54_RS02030 0.20 +0.5 426,575 - LRK54_RS02030 0.20 -1.9 426,575 - LRK54_RS02030 0.20 -0.9 426,575 - LRK54_RS02030 0.20 +0.2 426,575 - LRK54_RS02030 0.20 -1.0 426,575 - LRK54_RS02030 0.20 -0.7 426,575 - LRK54_RS02030 0.20 -0.8 426,576 + LRK54_RS02030 0.20 +1.7 426,576 + LRK54_RS02030 0.20 -0.4 426,576 + LRK54_RS02030 0.20 +1.4 426,576 + LRK54_RS02030 0.20 -0.7 426,576 + LRK54_RS02030 0.20 -0.4 426,576 + LRK54_RS02030 0.20 -2.8 426,577 - LRK54_RS02030 0.20 -0.2 426,577 - LRK54_RS02030 0.20 -3.0 426,577 - LRK54_RS02030 0.20 -0.3 426,577 - LRK54_RS02030 0.20 -2.0 426,577 - LRK54_RS02030 0.20 -0.7 426,577 - LRK54_RS02030 0.20 -0.3 426,577 - LRK54_RS02030 0.20 +0.3 426,577 - LRK54_RS02030 0.20 -0.7 426,577 - LRK54_RS02030 0.20 -0.5 426,577 - LRK54_RS02030 0.20 -0.6 426,577 - LRK54_RS02030 0.20 -1.0 426,577 - LRK54_RS02030 0.20 +0.3 426,660 + LRK54_RS02030 0.41 +2.4 426,661 - LRK54_RS02030 0.41 +1.0 426,661 - LRK54_RS02030 0.41 -1.4 426,661 - LRK54_RS02030 0.41 +0.4 426,814 + LRK54_RS02030 0.79 +1.6 426,958 + -0.0 427,082 - -1.7 427,129 + +0.1 427,130 - -0.2 427,130 - +1.4 427,393 + -0.4 427,393 + +1.2 427,393 + -0.4 427,393 + -0.3 427,393 + +0.6 427,393 + +2.4 427,393 + +2.0 427,393 + -0.4 427,394 - -0.7 427,394 - -0.7 427,394 - +0.3 427,394 - +1.2 427,394 - -1.2 427,394 - -1.0 427,394 - +1.0 427,394 - -0.1 427,394 - -0.2 427,394 - +0.8 427,394 - +0.3 427,394 - -0.6 427,450 + LRK54_RS02035 0.14 -0.5 427,450 + LRK54_RS02035 0.14 -0.2 427,450 + LRK54_RS02035 0.14 +0.5 427,450 + LRK54_RS02035 0.14 -0.5 427,450 + LRK54_RS02035 0.14 -0.7 427,450 + LRK54_RS02035 0.14 -1.0 427,450 + LRK54_RS02035 0.14 -0.2 427,450 + LRK54_RS02035 0.14 -0.7 427,450 + LRK54_RS02035 0.14 -0.9 427,450 + LRK54_RS02035 0.14 -0.5 427,450 + LRK54_RS02035 0.14 -1.1 427,450 + LRK54_RS02035 0.14 -0.8 427,450 + LRK54_RS02035 0.14 +1.0 427,451 - LRK54_RS02035 0.14 +1.0 427,451 - LRK54_RS02035 0.14 -1.0 427,451 - LRK54_RS02035 0.14 -0.5 427,451 - LRK54_RS02035 0.14 -0.9 427,451 - LRK54_RS02035 0.14 -0.1 427,451 - LRK54_RS02035 0.14 +0.0 427,451 - LRK54_RS02035 0.14 +0.5 427,451 - LRK54_RS02035 0.14 -1.9 427,451 - LRK54_RS02035 0.14 -1.0 427,451 - LRK54_RS02035 0.14 -0.5 427,451 - LRK54_RS02035 0.14 -0.2 427,451 - LRK54_RS02035 0.14 +0.1 427,451 - LRK54_RS02035 0.14 -0.4
Or see this region's nucleotide sequence