Experiment: R2A pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS01900 and LRK54_RS01905 are separated by 33 nucleotides LRK54_RS01905 and LRK54_RS01910 are separated by 61 nucleotides LRK54_RS01910 and LRK54_RS01915 are separated by 6 nucleotides
LRK54_RS01900: LRK54_RS01900 - DMT family transporter, at 399,339 to 400,268
_RS01900
LRK54_RS01905: LRK54_RS01905 - class I SAM-dependent methyltransferase, at 400,302 to 400,946
_RS01905
LRK54_RS01910: LRK54_RS01910 - hypothetical protein, at 401,008 to 401,223
_RS01910
LRK54_RS01915: LRK54_RS01915 - CusA/CzcA family heavy metal efflux RND transporter, at 401,230 to 404,403
_RS01915
Position (kb) 401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.087 kb on - strand, within LRK54_RS01900 at 400.146 kb on + strand, within LRK54_RS01900 at 400.146 kb on + strand, within LRK54_RS01900 at 400.147 kb on - strand, within LRK54_RS01900 at 400.147 kb on - strand, within LRK54_RS01900 at 400.147 kb on - strand, within LRK54_RS01900 at 400.147 kb on - strand, within LRK54_RS01900 at 400.336 kb on - strand at 400.336 kb on - strand at 400.336 kb on - strand at 400.368 kb on + strand, within LRK54_RS01905 at 400.385 kb on + strand, within LRK54_RS01905 at 400.385 kb on + strand, within LRK54_RS01905 at 400.385 kb on + strand, within LRK54_RS01905 at 400.386 kb on - strand, within LRK54_RS01905 at 400.444 kb on + strand, within LRK54_RS01905 at 400.444 kb on + strand, within LRK54_RS01905 at 400.444 kb on + strand, within LRK54_RS01905 at 400.444 kb on + strand, within LRK54_RS01905 at 400.445 kb on - strand, within LRK54_RS01905 at 400.624 kb on - strand, within LRK54_RS01905 at 400.686 kb on + strand, within LRK54_RS01905 at 400.686 kb on + strand, within LRK54_RS01905 at 400.686 kb on + strand, within LRK54_RS01905 at 400.687 kb on - strand, within LRK54_RS01905 at 400.687 kb on - strand, within LRK54_RS01905 at 400.687 kb on - strand, within LRK54_RS01905 at 400.732 kb on + strand, within LRK54_RS01905 at 400.782 kb on - strand, within LRK54_RS01905 at 400.782 kb on - strand, within LRK54_RS01905 at 400.782 kb on - strand, within LRK54_RS01905 at 400.791 kb on + strand, within LRK54_RS01905 at 400.791 kb on + strand, within LRK54_RS01905 at 400.791 kb on + strand, within LRK54_RS01905 at 400.792 kb on - strand, within LRK54_RS01905 at 400.896 kb on + strand at 400.896 kb on + strand at 400.896 kb on + strand at 400.897 kb on - strand at 400.897 kb on - strand at 400.897 kb on - strand at 401.126 kb on + strand, within LRK54_RS01910 at 401.126 kb on + strand, within LRK54_RS01910 at 401.126 kb on + strand, within LRK54_RS01910 at 401.126 kb on + strand, within LRK54_RS01910 at 401.127 kb on - strand, within LRK54_RS01910 at 401.127 kb on - strand, within LRK54_RS01910 at 401.127 kb on - strand, within LRK54_RS01910 at 401.127 kb on - strand, within LRK54_RS01910 at 401.127 kb on - strand, within LRK54_RS01910 at 401.127 kb on - strand, within LRK54_RS01910 at 401.236 kb on + strand at 401.236 kb on + strand at 401.237 kb on - strand at 401.564 kb on + strand, within LRK54_RS01915 at 401.564 kb on + strand, within LRK54_RS01915 at 401.564 kb on + strand, within LRK54_RS01915 at 401.564 kb on + strand, within LRK54_RS01915 at 401.564 kb on + strand, within LRK54_RS01915 at 401.564 kb on + strand, within LRK54_RS01915 at 401.564 kb on + strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.814 kb on - strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.931 kb on - strand, within LRK54_RS01915 at 401.931 kb on - strand, within LRK54_RS01915 at 401.931 kb on - strand, within LRK54_RS01915 at 401.931 kb on - strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.987 kb on - strand, within LRK54_RS01915 at 402.154 kb on + strand, within LRK54_RS01915 at 402.154 kb on + strand, within LRK54_RS01915 at 402.155 kb on - strand, within LRK54_RS01915 at 402.155 kb on - strand, within LRK54_RS01915 at 402.155 kb on - strand, within LRK54_RS01915 at 402.197 kb on + strand, within LRK54_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction R2A pH7 remove 400,087 - LRK54_RS01900 0.80 -1.2 400,146 + LRK54_RS01900 0.87 -1.3 400,146 + LRK54_RS01900 0.87 +2.2 400,147 - LRK54_RS01900 0.87 -1.4 400,147 - LRK54_RS01900 0.87 -0.4 400,147 - LRK54_RS01900 0.87 -0.7 400,147 - LRK54_RS01900 0.87 -0.1 400,336 - +1.4 400,336 - +0.8 400,336 - -0.1 400,368 + LRK54_RS01905 0.10 +0.8 400,385 + LRK54_RS01905 0.13 +1.7 400,385 + LRK54_RS01905 0.13 +0.8 400,385 + LRK54_RS01905 0.13 -0.4 400,386 - LRK54_RS01905 0.13 -1.3 400,444 + LRK54_RS01905 0.22 -0.4 400,444 + LRK54_RS01905 0.22 -2.5 400,444 + LRK54_RS01905 0.22 -0.1 400,444 + LRK54_RS01905 0.22 +0.6 400,445 - LRK54_RS01905 0.22 -0.3 400,624 - LRK54_RS01905 0.50 -0.6 400,686 + LRK54_RS01905 0.60 -0.7 400,686 + LRK54_RS01905 0.60 -2.4 400,686 + LRK54_RS01905 0.60 +0.6 400,687 - LRK54_RS01905 0.60 +0.7 400,687 - LRK54_RS01905 0.60 -1.6 400,687 - LRK54_RS01905 0.60 +0.6 400,732 + LRK54_RS01905 0.67 -0.4 400,782 - LRK54_RS01905 0.74 -1.0 400,782 - LRK54_RS01905 0.74 -0.3 400,782 - LRK54_RS01905 0.74 +0.7 400,791 + LRK54_RS01905 0.76 +0.1 400,791 + LRK54_RS01905 0.76 +0.6 400,791 + LRK54_RS01905 0.76 -2.3 400,792 - LRK54_RS01905 0.76 +1.9 400,896 + +0.1 400,896 + -0.5 400,896 + +0.1 400,897 - +0.7 400,897 - +1.0 400,897 - -0.8 401,126 + LRK54_RS01910 0.55 +1.0 401,126 + LRK54_RS01910 0.55 -0.0 401,126 + LRK54_RS01910 0.55 +0.8 401,126 + LRK54_RS01910 0.55 +2.2 401,127 - LRK54_RS01910 0.55 -1.0 401,127 - LRK54_RS01910 0.55 +0.1 401,127 - LRK54_RS01910 0.55 +0.8 401,127 - LRK54_RS01910 0.55 -0.9 401,127 - LRK54_RS01910 0.55 -0.2 401,127 - LRK54_RS01910 0.55 -0.0 401,236 + +0.3 401,236 + +0.5 401,237 - +0.8 401,564 + LRK54_RS01915 0.11 -0.1 401,564 + LRK54_RS01915 0.11 +2.4 401,564 + LRK54_RS01915 0.11 +1.4 401,564 + LRK54_RS01915 0.11 -0.2 401,564 + LRK54_RS01915 0.11 -0.2 401,564 + LRK54_RS01915 0.11 -0.8 401,564 + LRK54_RS01915 0.11 -0.6 401,565 - LRK54_RS01915 0.11 +1.1 401,565 - LRK54_RS01915 0.11 -0.9 401,565 - LRK54_RS01915 0.11 -0.2 401,565 - LRK54_RS01915 0.11 +0.5 401,565 - LRK54_RS01915 0.11 +0.3 401,565 - LRK54_RS01915 0.11 +0.6 401,565 - LRK54_RS01915 0.11 -1.5 401,565 - LRK54_RS01915 0.11 -0.3 401,565 - LRK54_RS01915 0.11 +1.2 401,741 + LRK54_RS01915 0.16 -1.7 401,741 + LRK54_RS01915 0.16 -1.3 401,741 + LRK54_RS01915 0.16 -0.4 401,741 + LRK54_RS01915 0.16 -0.4 401,741 + LRK54_RS01915 0.16 -0.6 401,741 + LRK54_RS01915 0.16 +0.8 401,741 + LRK54_RS01915 0.16 -0.0 401,741 + LRK54_RS01915 0.16 +0.8 401,741 + LRK54_RS01915 0.16 +0.3 401,741 + LRK54_RS01915 0.16 +0.4 401,742 - LRK54_RS01915 0.16 -1.7 401,742 - LRK54_RS01915 0.16 -1.6 401,742 - LRK54_RS01915 0.16 -0.6 401,742 - LRK54_RS01915 0.16 -0.0 401,742 - LRK54_RS01915 0.16 -0.3 401,742 - LRK54_RS01915 0.16 -0.9 401,742 - LRK54_RS01915 0.16 -0.5 401,742 - LRK54_RS01915 0.16 +0.3 401,742 - LRK54_RS01915 0.16 -0.3 401,742 - LRK54_RS01915 0.16 -0.4 401,742 - LRK54_RS01915 0.16 -0.9 401,742 - LRK54_RS01915 0.16 +0.4 401,742 - LRK54_RS01915 0.16 +0.3 401,814 - LRK54_RS01915 0.18 -1.8 401,930 + LRK54_RS01915 0.22 +0.8 401,930 + LRK54_RS01915 0.22 -2.0 401,930 + LRK54_RS01915 0.22 +0.0 401,930 + LRK54_RS01915 0.22 +0.3 401,930 + LRK54_RS01915 0.22 -0.6 401,930 + LRK54_RS01915 0.22 -0.2 401,930 + LRK54_RS01915 0.22 +2.4 401,930 + LRK54_RS01915 0.22 -0.2 401,930 + LRK54_RS01915 0.22 +0.1 401,930 + LRK54_RS01915 0.22 +0.1 401,931 - LRK54_RS01915 0.22 -0.0 401,931 - LRK54_RS01915 0.22 -0.2 401,931 - LRK54_RS01915 0.22 +0.9 401,931 - LRK54_RS01915 0.22 -1.5 401,936 + LRK54_RS01915 0.22 -0.3 401,936 + LRK54_RS01915 0.22 +0.3 401,936 + LRK54_RS01915 0.22 -0.8 401,936 + LRK54_RS01915 0.22 +0.0 401,936 + LRK54_RS01915 0.22 -0.6 401,936 + LRK54_RS01915 0.22 +0.1 401,936 + LRK54_RS01915 0.22 -0.5 401,936 + LRK54_RS01915 0.22 +1.5 401,936 + LRK54_RS01915 0.22 -0.5 401,936 + LRK54_RS01915 0.22 -0.3 401,936 + LRK54_RS01915 0.22 -0.0 401,937 - LRK54_RS01915 0.22 -0.8 401,937 - LRK54_RS01915 0.22 +0.3 401,937 - LRK54_RS01915 0.22 -0.6 401,937 - LRK54_RS01915 0.22 +0.2 401,937 - LRK54_RS01915 0.22 -1.7 401,937 - LRK54_RS01915 0.22 -0.0 401,937 - LRK54_RS01915 0.22 +0.3 401,937 - LRK54_RS01915 0.22 -0.9 401,937 - LRK54_RS01915 0.22 +1.0 401,937 - LRK54_RS01915 0.22 -0.1 401,937 - LRK54_RS01915 0.22 -0.7 401,937 - LRK54_RS01915 0.22 -0.6 401,987 - LRK54_RS01915 0.24 +0.5 402,154 + LRK54_RS01915 0.29 -1.2 402,154 + LRK54_RS01915 0.29 +0.7 402,155 - LRK54_RS01915 0.29 +0.1 402,155 - LRK54_RS01915 0.29 +0.3 402,155 - LRK54_RS01915 0.29 -0.3 402,197 + LRK54_RS01915 0.30 +2.4
Or see this region's nucleotide sequence