Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS01610

Experiment: R2A pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS01605 and LRK54_RS01610 are separated by 28 nucleotidesLRK54_RS01610 and LRK54_RS01615 overlap by 4 nucleotidesLRK54_RS01615 and LRK54_RS01620 are separated by 315 nucleotides LRK54_RS01605: LRK54_RS01605 - histidinol dehydrogenase, at 345,707 to 347,005 _RS01605 LRK54_RS01610: LRK54_RS01610 - ATP phosphoribosyltransferase, at 347,034 to 347,927 _RS01610 LRK54_RS01615: LRK54_RS01615 - YerC/YecD family TrpR-related protein, at 347,924 to 348,259 _RS01615 LRK54_RS01620: LRK54_RS01620 - hypothetical protein, at 348,575 to 349,588 _RS01620 Position (kb) 347 348Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 346.418 kb on + strand, within LRK54_RS01605at 346.419 kb on + strand, within LRK54_RS01605at 346.420 kb on - strand, within LRK54_RS01605at 346.420 kb on - strand, within LRK54_RS01605at 346.420 kb on - strand, within LRK54_RS01605at 346.420 kb on - strand, within LRK54_RS01605at 346.420 kb on - strand, within LRK54_RS01605at 346.420 kb on - strand, within LRK54_RS01605at 346.420 kb on - strand, within LRK54_RS01605at 346.491 kb on + strand, within LRK54_RS01605at 346.491 kb on + strand, within LRK54_RS01605at 346.491 kb on + strand, within LRK54_RS01605at 346.491 kb on + strand, within LRK54_RS01605at 346.491 kb on + strand, within LRK54_RS01605at 346.491 kb on + strand, within LRK54_RS01605at 346.492 kb on - strand, within LRK54_RS01605at 346.492 kb on - strand, within LRK54_RS01605at 346.492 kb on - strand, within LRK54_RS01605at 346.492 kb on - strand, within LRK54_RS01605at 346.492 kb on - strand, within LRK54_RS01605at 346.492 kb on - strand, within LRK54_RS01605at 346.492 kb on - strand, within LRK54_RS01605at 346.626 kb on + strand, within LRK54_RS01605at 346.626 kb on + strand, within LRK54_RS01605at 346.626 kb on + strand, within LRK54_RS01605at 346.626 kb on + strand, within LRK54_RS01605at 346.626 kb on + strand, within LRK54_RS01605at 346.626 kb on + strand, within LRK54_RS01605at 346.626 kb on + strand, within LRK54_RS01605at 346.626 kb on + strand, within LRK54_RS01605at 346.626 kb on + strand, within LRK54_RS01605at 346.626 kb on + strand, within LRK54_RS01605at 346.626 kb on + strand, within LRK54_RS01605at 346.627 kb on - strand, within LRK54_RS01605at 346.627 kb on - strand, within LRK54_RS01605at 346.627 kb on - strand, within LRK54_RS01605at 346.627 kb on - strand, within LRK54_RS01605at 346.627 kb on - strand, within LRK54_RS01605at 346.627 kb on - strand, within LRK54_RS01605at 346.627 kb on - strand, within LRK54_RS01605at 346.627 kb on - strand, within LRK54_RS01605at 346.627 kb on - strand, within LRK54_RS01605at 346.627 kb on - strand, within LRK54_RS01605at 346.627 kb on - strand, within LRK54_RS01605at 346.627 kb on - strand, within LRK54_RS01605at 346.684 kb on + strand, within LRK54_RS01605at 346.842 kb on + strand, within LRK54_RS01605at 346.842 kb on + strand, within LRK54_RS01605at 346.842 kb on + strand, within LRK54_RS01605at 346.842 kb on + strand, within LRK54_RS01605at 346.842 kb on + strand, within LRK54_RS01605at 346.842 kb on + strand, within LRK54_RS01605at 346.842 kb on + strand, within LRK54_RS01605at 346.842 kb on + strand, within LRK54_RS01605at 346.842 kb on + strand, within LRK54_RS01605at 346.843 kb on - strand, within LRK54_RS01605at 346.843 kb on - strand, within LRK54_RS01605at 346.843 kb on - strand, within LRK54_RS01605at 346.843 kb on - strand, within LRK54_RS01605at 346.843 kb on - strand, within LRK54_RS01605at 346.843 kb on - strand, within LRK54_RS01605at 346.843 kb on - strand, within LRK54_RS01605at 346.843 kb on - strand, within LRK54_RS01605at 347.588 kb on - strand, within LRK54_RS01610at 347.837 kb on + strand, within LRK54_RS01610at 347.837 kb on + strand, within LRK54_RS01610at 347.837 kb on + strand, within LRK54_RS01610at 347.837 kb on + strand, within LRK54_RS01610at 347.837 kb on + strand, within LRK54_RS01610at 347.837 kb on + strand, within LRK54_RS01610at 347.838 kb on - strandat 347.838 kb on - strandat 347.838 kb on - strandat 347.838 kb on - strandat 347.838 kb on - strandat 347.838 kb on - strandat 347.838 kb on - strandat 347.838 kb on - strandat 347.838 kb on - strandat 347.986 kb on - strandat 348.009 kb on + strand, within LRK54_RS01615at 348.009 kb on + strand, within LRK54_RS01615at 348.009 kb on + strand, within LRK54_RS01615at 348.009 kb on + strand, within LRK54_RS01615at 348.010 kb on - strand, within LRK54_RS01615at 348.010 kb on - strand, within LRK54_RS01615at 348.034 kb on + strand, within LRK54_RS01615at 348.034 kb on + strand, within LRK54_RS01615at 348.034 kb on + strand, within LRK54_RS01615at 348.034 kb on + strand, within LRK54_RS01615at 348.034 kb on + strand, within LRK54_RS01615at 348.069 kb on + strand, within LRK54_RS01615at 348.070 kb on - strand, within LRK54_RS01615at 348.201 kb on + strand, within LRK54_RS01615at 348.201 kb on + strand, within LRK54_RS01615at 348.201 kb on + strand, within LRK54_RS01615at 348.201 kb on + strand, within LRK54_RS01615at 348.201 kb on + strand, within LRK54_RS01615at 348.201 kb on + strand, within LRK54_RS01615at 348.201 kb on + strand, within LRK54_RS01615at 348.201 kb on + strand, within LRK54_RS01615at 348.202 kb on - strand, within LRK54_RS01615at 348.202 kb on - strand, within LRK54_RS01615at 348.202 kb on - strand, within LRK54_RS01615at 348.202 kb on - strand, within LRK54_RS01615at 348.202 kb on - strand, within LRK54_RS01615at 348.202 kb on - strand, within LRK54_RS01615at 348.265 kb on - strandat 348.295 kb on + strandat 348.295 kb on + strandat 348.295 kb on + strandat 348.295 kb on + strandat 348.295 kb on + strandat 348.295 kb on + strandat 348.295 kb on + strandat 348.296 kb on - strandat 348.296 kb on - strandat 348.296 kb on - strandat 348.296 kb on - strandat 348.296 kb on - strandat 348.296 kb on - strandat 348.570 kb on + strandat 348.570 kb on + strandat 348.570 kb on + strandat 348.570 kb on + strandat 348.570 kb on + strandat 348.570 kb on + strandat 348.570 kb on + strandat 348.571 kb on - strandat 348.571 kb on - strandat 348.571 kb on - strandat 348.571 kb on - strandat 348.571 kb on - strandat 348.571 kb on - strandat 348.571 kb on - strandat 348.571 kb on - strandat 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.749 kb on + strand, within LRK54_RS01620at 348.750 kb on - strand, within LRK54_RS01620at 348.750 kb on - strand, within LRK54_RS01620at 348.750 kb on - strand, within LRK54_RS01620at 348.750 kb on - strand, within LRK54_RS01620at 348.750 kb on - strand, within LRK54_RS01620at 348.750 kb on - strand, within LRK54_RS01620at 348.750 kb on - strand, within LRK54_RS01620at 348.750 kb on - strand, within LRK54_RS01620at 348.750 kb on - strand, within LRK54_RS01620at 348.750 kb on - strand, within LRK54_RS01620at 348.750 kb on - strand, within LRK54_RS01620at 348.750 kb on - strand, within LRK54_RS01620at 348.750 kb on - strand, within LRK54_RS01620at 348.780 kb on + strand, within LRK54_RS01620at 348.780 kb on + strand, within LRK54_RS01620at 348.781 kb on - strand, within LRK54_RS01620at 348.781 kb on - strand, within LRK54_RS01620at 348.781 kb on - strand, within LRK54_RS01620at 348.791 kb on + strand, within LRK54_RS01620at 348.791 kb on + strand, within LRK54_RS01620at 348.791 kb on + strand, within LRK54_RS01620at 348.791 kb on + strand, within LRK54_RS01620at 348.791 kb on + strand, within LRK54_RS01620at 348.791 kb on + strand, within LRK54_RS01620at 348.791 kb on + strand, within LRK54_RS01620at 348.792 kb on - strand, within LRK54_RS01620at 348.792 kb on - strand, within LRK54_RS01620at 348.792 kb on - strand, within LRK54_RS01620at 348.792 kb on - strand, within LRK54_RS01620at 348.792 kb on - strand, within LRK54_RS01620at 348.792 kb on - strand, within LRK54_RS01620at 348.792 kb on - strand, within LRK54_RS01620at 348.792 kb on - strand, within LRK54_RS01620at 348.792 kb on - strand, within LRK54_RS01620at 348.792 kb on - strand, within LRK54_RS01620at 348.851 kb on + strand, within LRK54_RS01620at 348.914 kb on + strand, within LRK54_RS01620at 348.914 kb on + strand, within LRK54_RS01620at 348.914 kb on + strand, within LRK54_RS01620at 348.914 kb on + strand, within LRK54_RS01620at 348.914 kb on + strand, within LRK54_RS01620at 348.914 kb on + strand, within LRK54_RS01620at 348.914 kb on + strand, within LRK54_RS01620at 348.914 kb on + strand, within LRK54_RS01620at 348.915 kb on - strand, within LRK54_RS01620at 348.915 kb on - strand, within LRK54_RS01620at 348.915 kb on - strand, within LRK54_RS01620at 348.915 kb on - strand, within LRK54_RS01620at 348.915 kb on - strand, within LRK54_RS01620at 348.915 kb on - strand, within LRK54_RS01620

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A pH7
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346,418 + LRK54_RS01605 0.55 -0.5
346,419 + LRK54_RS01605 0.55 +2.2
346,420 - LRK54_RS01605 0.55 +0.9
346,420 - LRK54_RS01605 0.55 -0.6
346,420 - LRK54_RS01605 0.55 -0.3
346,420 - LRK54_RS01605 0.55 -1.7
346,420 - LRK54_RS01605 0.55 +0.6
346,420 - LRK54_RS01605 0.55 -0.3
346,420 - LRK54_RS01605 0.55 +0.4
346,491 + LRK54_RS01605 0.60 -1.2
346,491 + LRK54_RS01605 0.60 -0.7
346,491 + LRK54_RS01605 0.60 -0.8
346,491 + LRK54_RS01605 0.60 -0.2
346,491 + LRK54_RS01605 0.60 -0.3
346,491 + LRK54_RS01605 0.60 -0.8
346,492 - LRK54_RS01605 0.60 +0.3
346,492 - LRK54_RS01605 0.60 +0.4
346,492 - LRK54_RS01605 0.60 -0.6
346,492 - LRK54_RS01605 0.60 +0.0
346,492 - LRK54_RS01605 0.60 +1.2
346,492 - LRK54_RS01605 0.60 +1.2
346,492 - LRK54_RS01605 0.60 -0.3
346,626 + LRK54_RS01605 0.71 -1.5
346,626 + LRK54_RS01605 0.71 -1.4
346,626 + LRK54_RS01605 0.71 -1.0
346,626 + LRK54_RS01605 0.71 +0.7
346,626 + LRK54_RS01605 0.71 -0.0
346,626 + LRK54_RS01605 0.71 -0.1
346,626 + LRK54_RS01605 0.71 -0.3
346,626 + LRK54_RS01605 0.71 -1.0
346,626 + LRK54_RS01605 0.71 -0.7
346,626 + LRK54_RS01605 0.71 -0.4
346,626 + LRK54_RS01605 0.71 -1.1
346,627 - LRK54_RS01605 0.71 -0.3
346,627 - LRK54_RS01605 0.71 +0.0
346,627 - LRK54_RS01605 0.71 +1.4
346,627 - LRK54_RS01605 0.71 -0.0
346,627 - LRK54_RS01605 0.71 +0.7
346,627 - LRK54_RS01605 0.71 +0.8
346,627 - LRK54_RS01605 0.71 +0.4
346,627 - LRK54_RS01605 0.71 +0.8
346,627 - LRK54_RS01605 0.71 -0.7
346,627 - LRK54_RS01605 0.71 -0.4
346,627 - LRK54_RS01605 0.71 +0.1
346,627 - LRK54_RS01605 0.71 -1.4
346,684 + LRK54_RS01605 0.75 -0.1
346,842 + LRK54_RS01605 0.87 -0.4
346,842 + LRK54_RS01605 0.87 +0.4
346,842 + LRK54_RS01605 0.87 -0.7
346,842 + LRK54_RS01605 0.87 -1.2
346,842 + LRK54_RS01605 0.87 -0.8
346,842 + LRK54_RS01605 0.87 -0.7
346,842 + LRK54_RS01605 0.87 -0.4
346,842 + LRK54_RS01605 0.87 -2.8
346,842 + LRK54_RS01605 0.87 -0.1
346,843 - LRK54_RS01605 0.87 +0.6
346,843 - LRK54_RS01605 0.87 -0.1
346,843 - LRK54_RS01605 0.87 -0.9
346,843 - LRK54_RS01605 0.87 +2.4
346,843 - LRK54_RS01605 0.87 +0.2
346,843 - LRK54_RS01605 0.87 -1.0
346,843 - LRK54_RS01605 0.87 -0.7
346,843 - LRK54_RS01605 0.87 +2.4
347,588 - LRK54_RS01610 0.62 +1.0
347,837 + LRK54_RS01610 0.90 +1.9
347,837 + LRK54_RS01610 0.90 +0.0
347,837 + LRK54_RS01610 0.90 -0.7
347,837 + LRK54_RS01610 0.90 +0.0
347,837 + LRK54_RS01610 0.90 +0.4
347,837 + LRK54_RS01610 0.90 +1.6
347,838 - -0.7
347,838 - +0.7
347,838 - -0.2
347,838 - -1.3
347,838 - -0.4
347,838 - +0.8
347,838 - -1.6
347,838 - -0.2
347,838 - +0.6
347,986 - +1.4
348,009 + LRK54_RS01615 0.25 -0.8
348,009 + LRK54_RS01615 0.25 -0.7
348,009 + LRK54_RS01615 0.25 -1.0
348,009 + LRK54_RS01615 0.25 -0.7
348,010 - LRK54_RS01615 0.26 +0.6
348,010 - LRK54_RS01615 0.26 +2.4
348,034 + LRK54_RS01615 0.33 +0.3
348,034 + LRK54_RS01615 0.33 +3.2
348,034 + LRK54_RS01615 0.33 -0.9
348,034 + LRK54_RS01615 0.33 +0.2
348,034 + LRK54_RS01615 0.33 -0.2
348,069 + LRK54_RS01615 0.43 +0.7
348,070 - LRK54_RS01615 0.43 +0.4
348,201 + LRK54_RS01615 0.82 -0.5
348,201 + LRK54_RS01615 0.82 -0.8
348,201 + LRK54_RS01615 0.82 -0.4
348,201 + LRK54_RS01615 0.82 -0.4
348,201 + LRK54_RS01615 0.82 +2.0
348,201 + LRK54_RS01615 0.82 +0.6
348,201 + LRK54_RS01615 0.82 -1.3
348,201 + LRK54_RS01615 0.82 -0.8
348,202 - LRK54_RS01615 0.83 +0.8
348,202 - LRK54_RS01615 0.83 +0.1
348,202 - LRK54_RS01615 0.83 -0.1
348,202 - LRK54_RS01615 0.83 +0.1
348,202 - LRK54_RS01615 0.83 +0.8
348,202 - LRK54_RS01615 0.83 -1.5
348,265 - +1.2
348,295 + +0.1
348,295 + +0.1
348,295 + -0.2
348,295 + +2.4
348,295 + +0.8
348,295 + -1.3
348,295 + +0.1
348,296 - -0.9
348,296 - -0.9
348,296 - -0.2
348,296 - -0.7
348,296 - -0.1
348,296 - +0.5
348,570 + -0.9
348,570 + -1.5
348,570 + -1.0
348,570 + -0.3
348,570 + +1.4
348,570 + +0.8
348,570 + -0.6
348,571 - +0.6
348,571 - +0.2
348,571 - -0.4
348,571 - +0.8
348,571 - +0.7
348,571 - -0.4
348,571 - -0.1
348,571 - -0.8
348,749 + LRK54_RS01620 0.17 -0.2
348,749 + LRK54_RS01620 0.17 -0.9
348,749 + LRK54_RS01620 0.17 -0.6
348,749 + LRK54_RS01620 0.17 -0.8
348,749 + LRK54_RS01620 0.17 -0.5
348,749 + LRK54_RS01620 0.17 +0.5
348,749 + LRK54_RS01620 0.17 +0.1
348,749 + LRK54_RS01620 0.17 -0.3
348,749 + LRK54_RS01620 0.17 -0.2
348,749 + LRK54_RS01620 0.17 -0.3
348,749 + LRK54_RS01620 0.17 +1.2
348,749 + LRK54_RS01620 0.17 +0.2
348,749 + LRK54_RS01620 0.17 -0.6
348,749 + LRK54_RS01620 0.17 -1.0
348,749 + LRK54_RS01620 0.17 -0.4
348,749 + LRK54_RS01620 0.17 +0.0
348,749 + LRK54_RS01620 0.17 -0.0
348,749 + LRK54_RS01620 0.17 +3.4
348,750 - LRK54_RS01620 0.17 +0.1
348,750 - LRK54_RS01620 0.17 -2.5
348,750 - LRK54_RS01620 0.17 -0.5
348,750 - LRK54_RS01620 0.17 +0.2
348,750 - LRK54_RS01620 0.17 -0.0
348,750 - LRK54_RS01620 0.17 -0.7
348,750 - LRK54_RS01620 0.17 +0.4
348,750 - LRK54_RS01620 0.17 -0.2
348,750 - LRK54_RS01620 0.17 -0.9
348,750 - LRK54_RS01620 0.17 +2.8
348,750 - LRK54_RS01620 0.17 +0.2
348,750 - LRK54_RS01620 0.17 +0.1
348,750 - LRK54_RS01620 0.17 -0.0
348,780 + LRK54_RS01620 0.20 -1.2
348,780 + LRK54_RS01620 0.20 +0.0
348,781 - LRK54_RS01620 0.20 -0.0
348,781 - LRK54_RS01620 0.20 -1.0
348,781 - LRK54_RS01620 0.20 +1.2
348,791 + LRK54_RS01620 0.21 -0.3
348,791 + LRK54_RS01620 0.21 -0.6
348,791 + LRK54_RS01620 0.21 +0.2
348,791 + LRK54_RS01620 0.21 -0.5
348,791 + LRK54_RS01620 0.21 -0.0
348,791 + LRK54_RS01620 0.21 -1.3
348,791 + LRK54_RS01620 0.21 -0.1
348,792 - LRK54_RS01620 0.21 +0.5
348,792 - LRK54_RS01620 0.21 -0.9
348,792 - LRK54_RS01620 0.21 -0.0
348,792 - LRK54_RS01620 0.21 +2.4
348,792 - LRK54_RS01620 0.21 +0.6
348,792 - LRK54_RS01620 0.21 -0.9
348,792 - LRK54_RS01620 0.21 +1.1
348,792 - LRK54_RS01620 0.21 +0.1
348,792 - LRK54_RS01620 0.21 -0.4
348,792 - LRK54_RS01620 0.21 -0.5
348,851 + LRK54_RS01620 0.27 -1.0
348,914 + LRK54_RS01620 0.33 +0.8
348,914 + LRK54_RS01620 0.33 -0.2
348,914 + LRK54_RS01620 0.33 +1.7
348,914 + LRK54_RS01620 0.33 -1.2
348,914 + LRK54_RS01620 0.33 -0.4
348,914 + LRK54_RS01620 0.33 +0.5
348,914 + LRK54_RS01620 0.33 -0.2
348,914 + LRK54_RS01620 0.33 -0.5
348,915 - LRK54_RS01620 0.34 +0.5
348,915 - LRK54_RS01620 0.34 +0.0
348,915 - LRK54_RS01620 0.34 +0.4
348,915 - LRK54_RS01620 0.34 -0.9
348,915 - LRK54_RS01620 0.34 -0.3
348,915 - LRK54_RS01620 0.34 -0.9

Or see this region's nucleotide sequence