Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32915

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32905 and BPHYT_RS32910 are separated by 215 nucleotidesBPHYT_RS32910 and BPHYT_RS32915 are separated by 272 nucleotidesBPHYT_RS32915 and BPHYT_RS32920 are separated by 177 nucleotides BPHYT_RS32905: BPHYT_RS32905 - FAD-linked oxidase, at 2,962,856 to 2,964,247 _RS32905 BPHYT_RS32910: BPHYT_RS32910 - hypothetical protein, at 2,964,463 to 2,964,834 _RS32910 BPHYT_RS32915: BPHYT_RS32915 - LysR family transcriptional regulator, at 2,965,107 to 2,966,009 _RS32915 BPHYT_RS32920: BPHYT_RS32920 - alpha/beta hydrolase, at 2,966,187 to 2,967,023 _RS32920 Position (kb) 2965 2966 2967Strain fitness (log2 ratio) -2 -1 0 1at 2964.182 kb on - strandat 2964.182 kb on - strandat 2964.319 kb on - strandat 2964.319 kb on - strandat 2964.354 kb on + strandat 2964.492 kb on + strandat 2964.828 kb on - strandat 2964.838 kb on - strandat 2964.838 kb on - strandat 2964.912 kb on - strandat 2965.311 kb on - strand, within BPHYT_RS32915at 2965.363 kb on - strand, within BPHYT_RS32915at 2965.504 kb on + strand, within BPHYT_RS32915at 2965.505 kb on - strand, within BPHYT_RS32915at 2965.535 kb on - strand, within BPHYT_RS32915at 2965.614 kb on + strand, within BPHYT_RS32915at 2966.102 kb on - strandat 2966.112 kb on + strandat 2966.112 kb on + strandat 2966.112 kb on + strandat 2966.112 kb on + strandat 2966.112 kb on + strandat 2966.112 kb on + strandat 2966.113 kb on - strandat 2966.305 kb on - strand, within BPHYT_RS32920at 2966.305 kb on - strand, within BPHYT_RS32920at 2966.634 kb on + strand, within BPHYT_RS32920at 2966.635 kb on - strand, within BPHYT_RS32920at 2966.826 kb on + strand, within BPHYT_RS32920at 2966.827 kb on - strand, within BPHYT_RS32920at 2966.882 kb on + strand, within BPHYT_RS32920at 2966.882 kb on + strand, within BPHYT_RS32920at 2966.970 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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2,964,182 - -0.4
2,964,182 - +0.1
2,964,319 - -0.8
2,964,319 - +0.8
2,964,354 + +0.3
2,964,492 + -0.6
2,964,828 - -0.0
2,964,838 - -0.3
2,964,838 - -0.1
2,964,912 - -0.3
2,965,311 - BPHYT_RS32915 0.23 +0.8
2,965,363 - BPHYT_RS32915 0.28 +0.2
2,965,504 + BPHYT_RS32915 0.44 +0.7
2,965,505 - BPHYT_RS32915 0.44 +0.5
2,965,535 - BPHYT_RS32915 0.47 +0.1
2,965,614 + BPHYT_RS32915 0.56 +1.0
2,966,102 - -0.0
2,966,112 + -1.1
2,966,112 + -0.7
2,966,112 + +0.0
2,966,112 + -1.3
2,966,112 + +0.8
2,966,112 + -0.5
2,966,113 - -0.1
2,966,305 - BPHYT_RS32920 0.14 +0.1
2,966,305 - BPHYT_RS32920 0.14 -0.6
2,966,634 + BPHYT_RS32920 0.53 -0.5
2,966,635 - BPHYT_RS32920 0.54 +1.5
2,966,826 + BPHYT_RS32920 0.76 -0.8
2,966,827 - BPHYT_RS32920 0.76 +0.3
2,966,882 + BPHYT_RS32920 0.83 -0.0
2,966,882 + BPHYT_RS32920 0.83 -1.9
2,966,970 + +0.1

Or see this region's nucleotide sequence