Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS32905 and BPHYT_RS32910 are separated by 215 nucleotides BPHYT_RS32910 and BPHYT_RS32915 are separated by 272 nucleotides BPHYT_RS32915 and BPHYT_RS32920 are separated by 177 nucleotides
BPHYT_RS32905: BPHYT_RS32905 - FAD-linked oxidase, at 2,962,856 to 2,964,247
_RS32905
BPHYT_RS32910: BPHYT_RS32910 - hypothetical protein, at 2,964,463 to 2,964,834
_RS32910
BPHYT_RS32915: BPHYT_RS32915 - LysR family transcriptional regulator, at 2,965,107 to 2,966,009
_RS32915
BPHYT_RS32920: BPHYT_RS32920 - alpha/beta hydrolase, at 2,966,187 to 2,967,023
_RS32920
Position (kb)
2965
2966
2967 Strain fitness (log2 ratio)
-2
-1
0
1 at 2964.182 kb on - strand at 2964.182 kb on - strand at 2964.319 kb on - strand at 2964.319 kb on - strand at 2964.354 kb on + strand at 2964.492 kb on + strand at 2964.828 kb on - strand at 2964.838 kb on - strand at 2964.838 kb on - strand at 2964.912 kb on - strand at 2965.311 kb on - strand, within BPHYT_RS32915 at 2965.363 kb on - strand, within BPHYT_RS32915 at 2965.504 kb on + strand, within BPHYT_RS32915 at 2965.505 kb on - strand, within BPHYT_RS32915 at 2965.535 kb on - strand, within BPHYT_RS32915 at 2965.614 kb on + strand, within BPHYT_RS32915 at 2966.102 kb on - strand at 2966.112 kb on + strand at 2966.112 kb on + strand at 2966.112 kb on + strand at 2966.112 kb on + strand at 2966.112 kb on + strand at 2966.112 kb on + strand at 2966.113 kb on - strand at 2966.305 kb on - strand, within BPHYT_RS32920 at 2966.305 kb on - strand, within BPHYT_RS32920 at 2966.634 kb on + strand, within BPHYT_RS32920 at 2966.635 kb on - strand, within BPHYT_RS32920 at 2966.826 kb on + strand, within BPHYT_RS32920 at 2966.827 kb on - strand, within BPHYT_RS32920 at 2966.882 kb on + strand, within BPHYT_RS32920 at 2966.882 kb on + strand, within BPHYT_RS32920 at 2966.970 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 2,964,182 - -0.4 2,964,182 - +0.1 2,964,319 - -0.8 2,964,319 - +0.8 2,964,354 + +0.3 2,964,492 + -0.6 2,964,828 - -0.0 2,964,838 - -0.3 2,964,838 - -0.1 2,964,912 - -0.3 2,965,311 - BPHYT_RS32915 0.23 +0.8 2,965,363 - BPHYT_RS32915 0.28 +0.2 2,965,504 + BPHYT_RS32915 0.44 +0.7 2,965,505 - BPHYT_RS32915 0.44 +0.5 2,965,535 - BPHYT_RS32915 0.47 +0.1 2,965,614 + BPHYT_RS32915 0.56 +1.0 2,966,102 - -0.0 2,966,112 + -1.1 2,966,112 + -0.7 2,966,112 + +0.0 2,966,112 + -1.3 2,966,112 + +0.8 2,966,112 + -0.5 2,966,113 - -0.1 2,966,305 - BPHYT_RS32920 0.14 +0.1 2,966,305 - BPHYT_RS32920 0.14 -0.6 2,966,634 + BPHYT_RS32920 0.53 -0.5 2,966,635 - BPHYT_RS32920 0.54 +1.5 2,966,826 + BPHYT_RS32920 0.76 -0.8 2,966,827 - BPHYT_RS32920 0.76 +0.3 2,966,882 + BPHYT_RS32920 0.83 -0.0 2,966,882 + BPHYT_RS32920 0.83 -1.9 2,966,970 + +0.1
Or see this region's nucleotide sequence